Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 103.00320 * 2 1 4 4 C 1.52999 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46902 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46872 * 180.02562 * 5 4 3 7 7 C 1.34786 * 119.99843 * 180.02562 * 6 5 4 8 8 S 1.71199 * 119.99831 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99817 * 180.02562 * 7 6 5 10 10 C 1.39403 * 119.99660 * 185.68146 * 9 7 6 11 11 C 1.38664 * 119.64486 * 185.62129 * 10 9 7 12 12 C 1.40818 * 118.66965 * 179.72207 * 11 10 9 13 13 C 1.41542 * 121.00002 * 180.25072 * 12 11 10 14 14 H 1.07999 * 120.00365 * 145.68273 * 13 12 11 15 15 C 1.40029 * 119.99996 * 325.69364 * 13 12 11 16 16 N 1.30748 * 119.99778 * 354.64158 * 15 13 12 17 17 Si 1.86797 * 120.00166 * 174.64865 * 15 13 12 18 18 H 1.48501 * 109.47400 * 59.99521 * 17 15 13 19 19 H 1.48498 * 109.47350 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46972 * 299.99684 * 17 15 13 21 21 C 1.41172 * 118.00410 * 0.28016 * 12 11 10 22 22 C 1.36583 * 119.13539 * 359.97438 * 21 12 11 23 23 N 1.32075 * 121.25941 * 0.02789 * 22 21 12 24 24 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47055 * 300.00236 * 1 2 3 26 26 H 1.09003 * 109.47129 * 59.99433 * 1 2 3 27 27 H 1.08997 * 109.46908 * 60.00061 * 3 2 1 28 28 H 1.09000 * 109.47012 * 299.99907 * 3 2 1 29 29 H 1.08997 * 109.47096 * 60.00340 * 4 3 2 30 30 H 1.09000 * 109.47285 * 299.99904 * 4 3 2 31 31 H 1.08994 * 109.47175 * 60.00726 * 5 4 3 32 32 H 1.09000 * 109.47234 * 300.00133 * 5 4 3 33 33 H 0.97003 * 120.00669 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00022 * 5.67952 * 9 7 6 35 35 H 1.07998 * 120.67000 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99550 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.42989 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.37389 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 6 4.0866 3.4306 0.0000 6 7 5.5423 3.5956 0.0000 7 6 6.0805 4.8313 0.0000 8 16 5.0629 6.2081 0.0007 9 7 7.4197 4.9831 -0.0005 10 6 7.9769 6.2553 0.1190 11 6 9.3490 6.4170 0.0004 12 6 9.8894 7.7120 0.1188 13 6 11.2823 7.9342 0.0008 14 1 11.6475 8.8454 -0.4494 15 6 12.1867 6.9725 0.4677 16 7 11.7489 5.9188 1.1060 17 14 14.0187 7.1952 0.1787 18 1 14.4716 8.4553 0.8208 19 1 14.7557 6.0479 0.7667 20 1 14.2853 7.2597 -1.2808 21 6 9.0003 8.7818 0.3592 22 6 7.6633 8.5241 0.4665 23 7 7.1905 7.2963 0.3501 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8033 2.2370 0.8900 28 1 1.8033 2.2371 -0.8900 29 1 4.1617 1.4701 -0.8891 30 1 4.1609 1.4703 0.8909 31 1 3.6674 3.9006 0.8895 32 1 3.6681 3.8997 -0.8904 33 1 6.1190 2.8155 0.0000 34 1 7.9957 4.2072 -0.0840 35 1 9.9900 5.5674 -0.1831 36 1 12.3755 5.2528 1.4297 37 1 9.3724 9.7909 0.4571 38 1 6.9797 9.3396 0.6508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = 56.454229 kcal Electronic energy + Delta-G solvation = -19898.815228 eV Core-core repulsion = 16800.934462 eV Total energy + Delta-G solvation = -3097.880767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.36355 -37.96891 -35.73536 -33.98164 -32.99765 -30.54183 -29.41877 -28.89775 -26.50655 -25.97791 -23.46637 -22.38899 -21.82069 -20.92844 -18.15650 -17.98597 -16.86248 -16.21656 -16.16155 -15.44305 -14.95369 -14.91543 -14.57192 -14.28726 -14.09490 -13.91341 -13.84599 -13.72116 -13.13623 -12.89992 -12.60802 -12.31876 -11.98509 -11.68849 -11.50179 -11.24213 -11.17774 -10.88745 -10.42763 -10.39848 -10.30594 -10.17974 -9.58868 -9.36039 -8.53808 -8.08884 -7.93746 -7.51150 -6.97005 -6.78044 -5.40864 -4.61982 1.23019 1.67045 2.17128 2.52275 2.81030 2.92161 3.01305 3.04354 3.08808 3.26448 3.86062 3.87783 4.45886 4.53282 4.63283 4.69774 4.72485 4.75050 5.10455 5.14781 5.29218 5.42458 5.60358 5.71998 5.73121 5.82402 6.19143 6.42628 6.71728 6.73786 6.92002 6.99344 7.10767 7.35246 7.44989 7.70315 7.85575 8.13960 8.44193 8.68951 8.76359 9.61705 10.15023 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002428 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.834460 B =11528.725859 C =12530.855056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.267 6.267 3 C -0.079 4.079 4 C -0.118 4.118 5 C 0.137 3.863 6 N -0.700 5.700 7 C 0.532 3.468 8 S -0.548 6.548 9 N -0.606 5.606 10 C 0.311 3.689 11 C -0.217 4.217 12 C 0.143 3.857 13 C -0.464 4.464 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.809 5.809 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.261 4.261 22 C 0.107 3.893 23 N -0.483 5.483 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.390 0.610 34 H 0.401 0.599 35 H 0.123 0.877 36 H 0.280 0.720 37 H 0.103 0.897 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 -12.523 -1.744 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.042 6.042 3 C -0.228 4.228 4 C -0.157 4.157 5 C 0.010 3.990 6 N -0.333 5.333 7 C 0.177 3.823 8 S -0.418 6.418 9 N -0.229 5.229 10 C 0.084 3.916 11 C -0.243 4.243 12 C 0.134 3.866 13 C -0.496 4.496 14 H 0.099 0.901 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.285 4.285 22 C -0.049 4.049 23 N -0.201 5.201 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.226 0.774 34 H 0.238 0.762 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.081 -12.789 -1.533 19.084 hybrid contribution 2.164 -0.382 -0.108 2.200 sum -11.917 -13.171 -1.641 17.838 Atomic orbital electron populations 1.23380 0.93855 1.06550 1.05125 1.86931 1.07731 1.11365 1.98125 1.23235 0.99369 0.94290 1.05902 1.21526 0.93738 0.96335 1.04095 1.21449 0.78241 0.94535 1.04737 1.44991 1.08553 1.04868 1.74938 1.22346 0.86758 0.90976 0.82183 1.92836 1.51335 1.29462 1.68160 1.42239 1.03388 1.09464 1.67783 1.18226 0.89024 0.83715 1.00609 1.21551 0.90642 1.00153 1.12000 1.17548 0.93305 0.89828 0.85913 1.19460 0.90093 1.03959 1.36126 0.90095 1.25873 1.01630 0.93919 0.92676 1.69717 1.37268 1.08882 1.27703 0.86258 0.81302 0.78800 0.79694 1.18941 1.20411 1.18901 1.21925 0.94782 0.99489 1.12289 1.21893 0.92753 0.93932 0.96327 1.69583 1.33572 0.97811 1.19135 0.88083 0.90338 0.90345 0.89321 0.89340 0.90314 0.90269 0.89688 0.89764 0.77386 0.76162 0.85944 0.90955 0.87929 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.76 101.05 1.09 0.43 16 2 S -0.27 -2.17 22.38 -107.50 -2.41 -4.58 16 3 C -0.08 -0.56 5.94 37.16 0.22 -0.34 16 4 C -0.12 -0.89 5.34 -26.73 -0.14 -1.03 16 5 C 0.14 1.41 5.13 -4.04 -0.02 1.39 16 6 N -0.70 -8.53 5.56 -62.03 -0.34 -8.87 16 7 C 0.53 9.37 7.94 -86.91 -0.69 8.68 16 8 S -0.55 -11.88 25.37 -107.50 -2.73 -14.60 16 9 N -0.61 -11.21 5.39 -13.02 -0.07 -11.28 16 10 C 0.31 7.21 7.37 -154.72 -1.14 6.07 16 11 C -0.22 -5.33 8.56 -38.45 -0.33 -5.66 16 12 C 0.14 3.67 5.52 -106.55 -0.59 3.09 16 13 C -0.46 -11.81 9.11 -37.65 -0.34 -12.15 16 14 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 15 C 0.08 1.82 5.34 -17.34 -0.09 1.73 16 16 N -0.81 -19.92 11.03 55.55 0.61 -19.31 16 17 Si 0.91 18.08 29.56 -169.99 -5.03 13.05 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.26 -6.28 9.85 -39.07 -0.38 -6.66 16 22 C 0.11 2.50 11.10 -18.05 -0.20 2.30 16 23 N -0.48 -11.78 6.18 -12.76 -0.08 -11.86 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.98 7.99 -51.93 -0.41 0.57 16 32 H 0.08 0.95 7.99 -51.93 -0.42 0.53 16 33 H 0.39 3.60 8.49 -40.82 -0.35 3.26 16 34 H 0.40 6.05 8.72 -40.82 -0.36 5.69 16 35 H 0.12 3.00 6.58 -52.49 -0.35 2.65 16 36 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.13 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -31.39 347.77 -12.65 -44.04 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.23 Total: 10.32 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.62 Total: -2.15 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.12 Total: -51.32 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: -14.05 SS G_CDS: -5.13 Total: -19.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.39 -12.65 -44.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.491 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds