Wall clock time and date at job start Tue Mar 31 2020 10:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 103.00320 * 2 1 4 4 C 1.52999 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46902 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46872 * 180.02562 * 5 4 3 7 7 C 1.34786 * 119.99843 * 180.02562 * 6 5 4 8 8 S 1.71199 * 119.99831 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99817 * 180.02562 * 7 6 5 10 10 C 1.39403 * 119.99660 * 185.68146 * 9 7 6 11 11 C 1.38664 * 119.64486 * 185.62129 * 10 9 7 12 12 C 1.40818 * 118.66965 * 179.72207 * 11 10 9 13 13 C 1.41542 * 121.00002 * 180.25072 * 12 11 10 14 14 H 1.07999 * 120.00365 * 145.68273 * 13 12 11 15 15 C 1.40029 * 119.99996 * 325.69364 * 13 12 11 16 16 N 1.30748 * 119.99778 * 354.64158 * 15 13 12 17 17 Si 1.86797 * 120.00166 * 174.64865 * 15 13 12 18 18 H 1.48501 * 109.47400 * 59.99521 * 17 15 13 19 19 H 1.48498 * 109.47350 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46972 * 299.99684 * 17 15 13 21 21 C 1.41172 * 118.00410 * 0.28016 * 12 11 10 22 22 C 1.36583 * 119.13539 * 359.97438 * 21 12 11 23 23 N 1.32075 * 121.25941 * 0.02789 * 22 21 12 24 24 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47055 * 300.00236 * 1 2 3 26 26 H 1.09003 * 109.47129 * 59.99433 * 1 2 3 27 27 H 1.08997 * 109.46908 * 60.00061 * 3 2 1 28 28 H 1.09000 * 109.47012 * 299.99907 * 3 2 1 29 29 H 1.08997 * 109.47096 * 60.00340 * 4 3 2 30 30 H 1.09000 * 109.47285 * 299.99904 * 4 3 2 31 31 H 1.08994 * 109.47175 * 60.00726 * 5 4 3 32 32 H 1.09000 * 109.47234 * 300.00133 * 5 4 3 33 33 H 0.97003 * 120.00669 * 0.02562 * 6 5 4 34 34 H 0.96996 * 120.00022 * 5.67952 * 9 7 6 35 35 H 1.07998 * 120.67000 * 359.97438 * 11 10 9 36 36 H 0.97002 * 119.99550 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.42989 * 179.97438 * 21 12 11 38 38 H 1.08000 * 119.37389 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 6 4.0866 3.4306 0.0000 6 7 5.5423 3.5956 0.0000 7 6 6.0805 4.8313 0.0000 8 16 5.0629 6.2081 0.0007 9 7 7.4197 4.9831 -0.0005 10 6 7.9769 6.2553 0.1190 11 6 9.3490 6.4170 0.0004 12 6 9.8894 7.7120 0.1188 13 6 11.2823 7.9342 0.0008 14 1 11.6475 8.8454 -0.4494 15 6 12.1867 6.9725 0.4677 16 7 11.7489 5.9188 1.1060 17 14 14.0187 7.1952 0.1787 18 1 14.4716 8.4553 0.8208 19 1 14.7557 6.0479 0.7667 20 1 14.2853 7.2597 -1.2808 21 6 9.0003 8.7818 0.3592 22 6 7.6633 8.5241 0.4665 23 7 7.1905 7.2963 0.3501 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8033 2.2370 0.8900 28 1 1.8033 2.2371 -0.8900 29 1 4.1617 1.4701 -0.8891 30 1 4.1609 1.4703 0.8909 31 1 3.6674 3.9006 0.8895 32 1 3.6681 3.8997 -0.8904 33 1 6.1190 2.8155 0.0000 34 1 7.9957 4.2072 -0.0840 35 1 9.9900 5.5674 -0.1831 36 1 12.3755 5.2528 1.4297 37 1 9.3724 9.7909 0.4571 38 1 6.9797 9.3396 0.6508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:53 Heat of formation + Delta-G solvation = 39.829593 kcal Electronic energy + Delta-G solvation = -19899.536127 eV Core-core repulsion = 16800.934462 eV Total energy + Delta-G solvation = -3098.601665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00430 -39.42513 -37.04724 -35.74134 -34.06992 -32.40133 -30.60347 -29.79604 -28.01103 -27.35511 -24.93637 -23.62851 -23.36130 -22.44070 -19.85109 -19.42179 -18.17544 -17.33285 -17.05287 -16.95209 -16.53080 -16.15465 -16.03608 -15.75865 -15.61470 -14.72336 -14.70987 -14.65846 -14.33141 -14.27294 -14.06661 -13.43394 -13.02299 -12.96956 -12.86498 -12.66429 -12.41059 -12.14386 -12.04090 -11.98301 -11.92193 -11.20782 -10.96749 -10.87471 -10.33474 -9.82276 -9.13383 -8.71134 -8.70068 -8.57254 -7.13606 -6.52996 0.11630 0.65403 1.05168 1.09949 1.16213 1.41886 1.52228 1.58456 1.61106 1.66825 2.22684 2.57706 2.86308 3.73657 3.82077 3.84850 3.89202 4.08565 4.34129 4.36008 4.38418 4.54093 4.64348 4.66089 4.72016 4.90388 4.90824 4.97425 4.97564 5.08287 5.24259 5.32694 5.46037 5.57198 5.92103 5.97137 6.24762 6.40253 6.57378 6.81577 6.88433 7.79370 8.36044 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002428 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.834460 B =11528.725859 C =12530.855056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.311 6.311 3 C -0.072 4.072 4 C -0.104 4.104 5 C 0.137 3.863 6 N -0.667 5.667 7 C 0.554 3.446 8 S -0.632 6.632 9 N -0.601 5.601 10 C 0.313 3.687 11 C -0.230 4.230 12 C 0.114 3.886 13 C -0.495 4.495 14 H 0.081 0.919 15 C 0.037 3.963 16 N -0.832 5.832 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.260 1.260 21 C -0.273 4.273 22 C 0.101 3.899 23 N -0.497 5.497 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.413 0.587 34 H 0.419 0.581 35 H 0.118 0.882 36 H 0.288 0.712 37 H 0.114 0.886 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 -14.210 -1.837 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.086 6.086 3 C -0.220 4.220 4 C -0.143 4.143 5 C 0.012 3.988 6 N -0.298 5.298 7 C 0.194 3.806 8 S -0.504 6.504 9 N -0.226 5.226 10 C 0.084 3.916 11 C -0.257 4.257 12 C 0.105 3.895 13 C -0.526 4.526 14 H 0.099 0.901 15 C -0.177 4.177 16 N -0.459 5.459 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.296 4.296 22 C -0.055 4.055 23 N -0.215 5.215 24 H 0.128 0.872 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.259 0.741 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.943 -14.555 -1.629 20.222 hybrid contribution 1.994 -0.007 -0.074 1.996 sum -11.949 -14.562 -1.702 18.914 Atomic orbital electron populations 1.23434 0.91147 1.07440 1.05930 1.87053 1.10860 1.12423 1.98239 1.23182 0.98855 0.93512 1.06487 1.21406 0.94313 0.93801 1.04748 1.21598 0.76421 0.96626 1.04158 1.44941 1.09916 1.03687 1.71276 1.21940 0.85806 0.91590 0.81232 1.93024 1.52589 1.32672 1.72069 1.41982 1.03963 1.08670 1.67981 1.18355 0.88808 0.84977 0.99434 1.21503 0.91224 0.99761 1.13178 1.17955 0.94113 0.90884 0.86544 1.19725 0.90622 1.04890 1.37404 0.90060 1.26696 1.05942 0.93265 0.91825 1.69765 1.39050 1.09429 1.27680 0.85177 0.75498 0.78927 0.79657 1.18713 1.19347 1.18443 1.22080 0.94980 0.99831 1.12723 1.22268 0.93008 0.94523 0.95667 1.69744 1.33845 0.98309 1.19569 0.87175 0.89569 0.89514 0.88851 0.88727 0.89545 0.89723 0.90425 0.90205 0.74824 0.74069 0.86383 0.90172 0.86779 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.31 -4.54 22.38 -56.49 -1.26 -5.81 16 3 C -0.07 -0.88 5.94 71.98 0.43 -0.45 16 4 C -0.10 -1.31 5.34 30.59 0.16 -1.15 16 5 C 0.14 2.58 5.13 86.38 0.44 3.03 16 6 N -0.67 -14.76 5.56 -350.16 -1.95 -16.71 16 7 C 0.55 18.87 7.94 179.05 1.42 20.29 16 8 S -0.63 -27.56 25.37 -56.49 -1.43 -29.00 16 9 N -0.60 -21.66 5.39 -195.12 -1.05 -22.71 16 10 C 0.31 14.54 7.37 132.78 0.98 15.52 16 11 C -0.23 -11.45 8.56 23.00 0.20 -11.25 16 12 C 0.11 5.96 5.52 -21.11 -0.12 5.84 16 13 C -0.49 -25.45 9.11 23.52 0.21 -25.24 16 14 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 15 C 0.04 1.78 5.34 85.29 0.46 2.23 16 16 N -0.83 -40.80 11.03 21.84 0.24 -40.56 16 17 Si 0.99 36.40 29.56 68.60 2.03 38.43 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 19 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 21 C -0.27 -13.31 9.85 22.60 0.22 -13.09 16 22 C 0.10 4.78 11.10 84.27 0.94 5.72 16 23 N -0.50 -24.42 6.18 -194.29 -1.20 -25.62 16 24 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.69 7.99 -2.39 -0.02 1.67 16 32 H 0.08 1.69 7.99 -2.39 -0.02 1.67 16 33 H 0.41 6.28 8.49 -92.71 -0.79 5.49 16 34 H 0.42 11.96 8.72 -92.71 -0.81 11.15 16 35 H 0.12 5.85 6.58 -2.91 -0.02 5.84 16 36 H 0.29 12.78 8.29 -92.71 -0.77 12.01 16 37 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 38 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -68.80 347.77 1.43 -67.37 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.51 Total: 32.94 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.56 Total: 1.67 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.96 Total: -105.60 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: -32.11 SS G_CDS: -2.70 Total: -34.80 kcal Total: -68.80 1.43 -67.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.201 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds