Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00135 * 2 1 4 4 C 1.50706 * 109.46784 * 270.00119 * 3 2 1 5 5 H 1.07993 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99476 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00275 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99570 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47009 * 89.99958 * 8 6 4 10 10 H 1.48502 * 109.47158 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.47041 * 330.00258 * 8 6 4 12 12 C 1.34778 * 120.00182 * 179.97438 * 2 1 3 13 13 O 1.21702 * 119.99863 * 180.02562 * 12 2 1 14 14 C 1.43198 * 120.00040 * 0.02562 * 12 2 1 15 15 C 3.48137 * 79.59096 * 179.97438 * 2 1 3 16 16 C 4.85427 * 73.91506 * 179.97438 * 2 1 3 17 17 C 1.39837 * 120.17175 * 80.77603 * 16 15 14 18 18 C 1.37885 * 119.82423 * 180.27401 * 17 16 15 19 19 C 1.38401 * 120.17396 * 359.48875 * 18 17 16 20 20 C 1.50700 * 119.83097 * 180.25833 * 19 18 17 21 21 F 1.39902 * 109.46925 * 270.25270 * 20 19 18 22 22 F 1.39903 * 109.46962 * 30.25145 * 20 19 18 23 23 F 1.39901 * 109.47496 * 150.24789 * 20 19 18 24 24 C 1.38404 * 120.34538 * 0.50697 * 19 18 17 25 25 C 1.37896 * 120.16913 * 359.75421 * 24 19 18 26 26 H 1.09000 * 109.47329 * 269.99825 * 1 2 3 27 27 H 1.08996 * 109.47161 * 30.00295 * 1 2 3 28 28 H 1.09004 * 109.46847 * 150.00229 * 1 2 3 29 29 H 1.09000 * 109.47050 * 29.99309 * 3 2 1 30 30 H 1.08992 * 109.47515 * 150.00072 * 3 2 1 31 31 H 0.96994 * 119.99734 * 180.02562 * 7 6 4 32 32 H 1.08002 * 120.08316 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.91348 * 179.72122 * 18 17 16 34 34 H 1.07999 * 119.91433 * 179.72646 * 24 19 18 35 35 H 1.07996 * 120.08406 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5525 3.6186 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.3077 4.2591 -3.9015 10 1 4.6979 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1671 0.0010 14 6 1.4229 -2.4073 0.0005 15 6 0.8360 -3.4241 0.0015 16 6 0.1200 -4.6642 0.0021 17 6 -0.3994 -5.1764 -1.1909 18 6 -1.0925 -6.3684 -1.1812 19 6 -1.2655 -7.0628 0.0034 20 6 -2.0193 -8.3678 0.0041 21 9 -3.3799 -8.1202 0.2156 22 9 -1.8476 -9.0062 -1.2289 23 9 -1.5302 -9.1884 1.0261 24 6 -0.7543 -6.5626 1.1883 25 6 -0.0635 -5.3692 1.1958 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0286 4.4448 -0.8505 32 1 -0.2622 -4.6373 -2.1167 33 1 -1.4982 -6.7630 -2.1011 34 1 -0.8973 -7.1080 2.1093 35 1 0.3344 -4.9799 2.1212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790491916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = -105.404553 kcal Electronic energy + Delta-G solvation = -23423.613884 eV Core-core repulsion = 19166.368081 eV Total energy + Delta-G solvation = -4257.245804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.53064 -48.04805 -47.98962 -39.82481 -39.04978 -35.00080 -34.49892 -32.70366 -31.65294 -31.47385 -28.09720 -26.84031 -25.97553 -23.96729 -23.33249 -22.66640 -20.75676 -18.95108 -18.84406 -18.72817 -18.01442 -16.77655 -16.61874 -15.70342 -15.69959 -15.23602 -14.87627 -14.77072 -14.61000 -14.46258 -14.45220 -14.26661 -14.14775 -13.88054 -13.72529 -13.65304 -13.03717 -12.72919 -12.25037 -12.00891 -11.96630 -11.88335 -11.61154 -11.22984 -10.98937 -10.65766 -10.54444 -10.25009 -9.75215 -9.58528 -9.56845 -9.09428 -8.50493 -7.85678 -6.11812 -4.17282 0.10776 0.79858 1.74718 2.25851 2.35247 3.26362 3.26964 3.31932 3.33813 3.38822 3.48241 3.62052 3.86958 4.03733 4.22064 4.35261 4.41016 4.43440 4.74404 4.94456 5.00587 5.22051 5.27417 5.43078 5.56295 5.67304 5.71843 5.83315 5.91180 6.11781 6.21472 6.87505 7.14755 7.27188 7.36603 7.83442 8.11136 8.14416 8.68195 8.88663 9.47952 10.96416 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.002163 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.978541 B =12941.809426 C =13246.560130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.584 5.584 3 C 0.244 3.756 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.607 3.393 13 O -0.517 6.517 14 C -0.124 4.124 15 C -0.108 4.108 16 C 0.058 3.942 17 C -0.096 4.096 18 C -0.067 4.067 19 C -0.182 4.182 20 C 0.509 3.491 21 F -0.176 7.176 22 F -0.177 7.177 23 F -0.177 7.177 24 C -0.067 4.067 25 C -0.096 4.096 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -22.102 2.805 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.314 5.314 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.392 3.608 13 O -0.395 6.395 14 C -0.127 4.127 15 C -0.110 4.110 16 C 0.057 3.943 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.183 4.183 20 C 0.455 3.545 21 F -0.157 7.157 22 F -0.158 7.158 23 F -0.158 7.158 24 C -0.085 4.085 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.525 -21.891 2.855 25.890 hybrid contribution -0.024 0.135 -0.981 0.990 sum -13.549 -21.756 1.874 25.699 Atomic orbital electron populations 1.21706 0.80698 1.02909 1.00946 1.48120 1.06711 1.07149 1.69436 1.19456 0.92733 0.77192 0.98022 1.21400 1.37055 1.06524 0.92021 0.92266 1.24937 0.95152 0.96279 0.97650 1.69924 1.38143 1.14271 1.30827 0.86455 0.77745 0.78629 0.84365 1.20565 1.20991 1.19823 1.14848 0.86051 0.80575 0.79283 1.90887 1.12250 1.86414 1.49938 1.21505 0.95530 0.94717 1.00994 1.19002 0.99469 0.93930 0.98638 1.16220 0.94898 0.89116 0.94020 1.21319 0.96756 0.95381 0.97899 1.20857 0.96567 0.94004 0.97075 1.20105 1.05539 0.95788 0.96910 1.18286 0.77622 0.84942 0.73635 1.93238 1.33608 1.94295 1.94595 1.93200 1.95232 1.83753 1.43607 1.93198 1.87665 1.74876 1.60068 1.20855 0.95209 0.95400 0.97085 1.21306 0.98225 0.93977 0.97888 0.93222 0.90071 0.92387 0.94227 0.93332 0.92557 0.83882 0.84009 0.84024 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.25 59.84 0.61 1.90 16 2 N -0.58 -12.35 2.86 -185.83 -0.53 -12.89 16 3 C 0.24 6.23 5.16 -5.19 -0.03 6.21 16 4 C -0.53 -14.75 9.39 -34.43 -0.32 -15.07 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.61 13.08 7.53 -14.33 -0.11 12.98 16 13 O -0.52 -13.32 16.67 5.19 0.09 -13.23 16 14 C -0.12 -2.13 11.70 -38.84 -0.45 -2.58 16 15 C -0.11 -1.50 13.25 -38.84 -0.51 -2.02 16 16 C 0.06 0.61 5.74 -106.77 -0.61 0.00 16 17 C -0.10 -0.85 9.77 -39.11 -0.38 -1.24 16 18 C -0.07 -0.52 9.38 -39.65 -0.37 -0.89 16 19 C -0.18 -1.48 5.46 -104.50 -0.57 -2.05 16 20 C 0.51 4.16 3.36 36.01 0.12 4.28 16 21 F -0.18 -1.54 17.30 2.25 0.04 -1.50 16 22 F -0.18 -1.50 16.45 2.25 0.04 -1.46 16 23 F -0.18 -1.49 16.45 2.25 0.04 -1.45 16 24 C -0.07 -0.52 9.38 -39.65 -0.37 -0.89 16 25 C -0.10 -0.84 9.77 -39.11 -0.38 -1.22 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.06 0.80 6.89 -51.93 -0.36 0.44 16 29 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 30 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 0.83 7.60 -52.49 -0.40 0.43 16 34 H 0.14 0.80 7.59 -52.49 -0.40 0.40 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -32.02 335.47 -6.23 -38.25 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -3.19 Total: -5.03 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.48 Total: 1.05 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.21 Total: -38.11 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.11 Total: -4.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.02 -6.23 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790491916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.153 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds