Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 120.00135 * 2 1 4 4 C 1.50706 * 109.46784 * 270.00119 * 3 2 1 5 5 H 1.07993 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99476 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00275 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99570 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47009 * 89.99958 * 8 6 4 10 10 H 1.48502 * 109.47158 * 209.99897 * 8 6 4 11 11 H 1.48499 * 109.47041 * 330.00258 * 8 6 4 12 12 C 1.34778 * 120.00182 * 179.97438 * 2 1 3 13 13 O 1.21702 * 119.99863 * 180.02562 * 12 2 1 14 14 C 1.43198 * 120.00040 * 0.02562 * 12 2 1 15 15 C 3.48137 * 79.59096 * 179.97438 * 2 1 3 16 16 C 4.85427 * 73.91506 * 179.97438 * 2 1 3 17 17 C 1.39837 * 120.17175 * 80.77603 * 16 15 14 18 18 C 1.37885 * 119.82423 * 180.27401 * 17 16 15 19 19 C 1.38401 * 120.17396 * 359.48875 * 18 17 16 20 20 C 1.50700 * 119.83097 * 180.25833 * 19 18 17 21 21 F 1.39902 * 109.46925 * 270.25270 * 20 19 18 22 22 F 1.39903 * 109.46962 * 30.25145 * 20 19 18 23 23 F 1.39901 * 109.47496 * 150.24789 * 20 19 18 24 24 C 1.38404 * 120.34538 * 0.50697 * 19 18 17 25 25 C 1.37896 * 120.16913 * 359.75421 * 24 19 18 26 26 H 1.09000 * 109.47329 * 269.99825 * 1 2 3 27 27 H 1.08996 * 109.47161 * 30.00295 * 1 2 3 28 28 H 1.09004 * 109.46847 * 150.00229 * 1 2 3 29 29 H 1.09000 * 109.47050 * 29.99309 * 3 2 1 30 30 H 1.08992 * 109.47515 * 150.00072 * 3 2 1 31 31 H 0.96994 * 119.99734 * 180.02562 * 7 6 4 32 32 H 1.08002 * 120.08316 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.91348 * 179.72122 * 18 17 16 34 34 H 1.07999 * 119.91433 * 179.72646 * 24 19 18 35 35 H 1.07996 * 120.08406 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5525 3.6186 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.3077 4.2591 -3.9015 10 1 4.6979 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1671 0.0010 14 6 1.4229 -2.4073 0.0005 15 6 0.8360 -3.4241 0.0015 16 6 0.1200 -4.6642 0.0021 17 6 -0.3994 -5.1764 -1.1909 18 6 -1.0925 -6.3684 -1.1812 19 6 -1.2655 -7.0628 0.0034 20 6 -2.0193 -8.3678 0.0041 21 9 -3.3799 -8.1202 0.2156 22 9 -1.8476 -9.0062 -1.2289 23 9 -1.5302 -9.1884 1.0261 24 6 -0.7543 -6.5626 1.1883 25 6 -0.0635 -5.3692 1.1958 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0286 4.4448 -0.8505 32 1 -0.2622 -4.6373 -2.1167 33 1 -1.4982 -6.7630 -2.1011 34 1 -0.8973 -7.1080 2.1093 35 1 0.3344 -4.9799 2.1212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790491916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = -123.032309 kcal Electronic energy + Delta-G solvation = -23424.378281 eV Core-core repulsion = 19166.368081 eV Total energy + Delta-G solvation = -4258.010201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.087 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.17912 -48.69467 -48.64465 -40.78458 -40.48079 -36.77752 -35.58182 -34.70668 -32.48685 -32.29980 -29.95991 -27.90519 -27.28112 -25.67308 -23.98085 -23.70126 -22.19195 -19.63356 -19.49072 -19.37472 -19.22465 -18.73578 -18.08913 -17.46155 -16.55872 -16.39722 -16.16000 -15.87267 -15.52996 -15.40210 -15.10135 -14.91929 -14.90735 -14.79681 -14.50434 -14.47537 -14.40571 -14.28729 -13.93372 -13.55324 -13.23544 -12.88850 -12.68442 -12.66442 -12.61664 -12.41999 -12.24272 -11.81419 -11.68001 -11.32896 -10.65510 -10.21083 -9.98439 -9.62557 -8.25104 -6.39857 -0.68784 0.16827 0.39052 1.33549 1.38188 1.40959 1.51454 1.60694 1.97389 2.34757 2.41953 2.54370 2.66794 2.96699 2.98189 3.06097 3.39306 3.75986 3.79874 3.92723 4.08827 4.28154 4.29475 4.53092 4.60721 4.84420 4.84801 4.89231 4.98365 5.02658 5.16578 5.21025 5.44696 5.54398 5.72326 5.95123 5.99528 6.45835 6.67063 7.05794 7.31447 8.82643 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.002163 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.978541 B =12941.809426 C =13246.560130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.257 3.743 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.608 3.392 13 O -0.578 6.578 14 C -0.189 4.189 15 C -0.034 4.034 16 C 0.022 3.978 17 C -0.089 4.089 18 C -0.066 4.066 19 C -0.177 4.177 20 C 0.513 3.487 21 F -0.179 7.179 22 F -0.178 7.178 23 F -0.177 7.177 24 C -0.065 4.065 25 C -0.088 4.088 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.007 0.993 31 H 0.269 0.731 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 -24.061 1.952 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.318 5.318 3 C 0.137 3.863 4 C -0.587 4.587 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.396 3.604 13 O -0.460 6.460 14 C -0.192 4.192 15 C -0.037 4.037 16 C 0.022 3.978 17 C -0.106 4.106 18 C -0.084 4.084 19 C -0.179 4.179 20 C 0.459 3.541 21 F -0.160 7.160 22 F -0.159 7.159 23 F -0.159 7.159 24 C -0.083 4.083 25 C -0.105 4.105 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.171 0.829 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.723 -23.863 2.009 28.648 hybrid contribution 0.501 0.524 -0.657 0.978 sum -15.223 -23.339 1.351 27.897 Atomic orbital electron populations 1.21960 0.77288 1.04037 1.03022 1.48090 1.08812 1.05847 1.69084 1.18974 0.91474 0.79166 0.96712 1.21657 1.37460 1.06811 0.92734 0.92753 1.25848 0.94678 0.96279 1.02128 1.70036 1.38658 1.14731 1.33053 0.85383 0.78158 0.78206 0.78876 1.18680 1.20546 1.19831 1.15190 0.85576 0.81889 0.77739 1.90827 1.14922 1.87559 1.52716 1.20418 0.98998 0.95057 1.04774 1.19385 0.96761 0.93016 0.94509 1.16375 0.97059 0.88582 0.95780 1.21439 0.95980 0.95616 0.97613 1.21070 0.96009 0.93375 0.97902 1.20279 1.04744 0.95541 0.97302 1.18248 0.77448 0.84881 0.73547 1.93239 1.33850 1.94301 1.94607 1.93203 1.95219 1.83797 1.43692 1.93201 1.87649 1.74925 1.60096 1.21084 0.94389 0.94943 0.97910 1.21447 0.97556 0.93910 0.97629 0.90623 0.90096 0.90021 0.94438 0.97510 0.92209 0.82880 0.81925 0.81823 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.25 127.77 1.31 3.75 16 2 N -0.59 -25.81 2.86 -860.07 -2.46 -28.27 16 3 C 0.26 13.79 5.16 85.63 0.44 14.23 16 4 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.58 5.46 84.66 0.46 1.04 16 7 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 8 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.61 27.43 7.53 85.49 0.64 28.07 16 13 O -0.58 -31.79 16.67 -4.35 -0.07 -31.86 16 14 C -0.19 -6.53 11.70 30.01 0.35 -6.18 16 15 C -0.03 -0.90 13.25 30.01 0.40 -0.50 16 16 C 0.02 0.41 5.74 -21.26 -0.12 0.29 16 17 C -0.09 -1.31 9.77 22.57 0.22 -1.09 16 18 C -0.07 -0.80 9.38 22.22 0.21 -0.59 16 19 C -0.18 -2.27 5.46 -19.79 -0.11 -2.38 16 20 C 0.51 6.84 3.36 71.24 0.24 7.08 16 21 F -0.18 -2.62 17.30 44.97 0.78 -1.85 16 22 F -0.18 -2.52 16.45 44.97 0.74 -1.78 16 23 F -0.18 -2.48 16.45 44.97 0.74 -1.74 16 24 C -0.07 -0.77 9.38 22.23 0.21 -0.56 16 25 C -0.09 -1.26 9.77 22.58 0.22 -1.04 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 28 H 0.08 2.14 6.89 -2.39 -0.02 2.12 16 29 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.01 0.42 7.42 -2.39 -0.02 0.40 16 31 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.16 1.29 7.60 -2.91 -0.02 1.27 16 34 H 0.16 1.21 7.59 -2.91 -0.02 1.19 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -72.52 335.47 7.90 -64.62 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: 1.14 Total: -1.63 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 4.71 Total: 10.99 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.17 Total: -83.09 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.07 Total: -31.86 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 2.26 Total: -5.37 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.52 7.90 -64.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790491916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.408 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds