Wall clock time and date at job start Tue Mar 31 2020 10:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86792 * 120.00267 * 2 1 4 4 H 1.48507 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47380 * 300.00372 * 3 2 1 6 6 H 1.48505 * 109.47054 * 60.00516 * 3 2 1 7 7 C 1.38881 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99936 * 163.92188 * 7 2 1 9 9 N 1.37137 * 120.00110 * 343.91637 * 7 2 1 10 10 C 1.34780 * 119.99977 * 165.17297 * 9 7 2 11 11 O 1.21282 * 120.00025 * 174.97102 * 10 9 7 12 12 C 1.50701 * 120.00090 * 354.97529 * 10 9 7 13 13 F 1.39901 * 110.01733 * 58.60659 * 12 10 9 14 14 C 1.54265 * 110.03012 * 297.16539 * 12 10 9 15 15 C 1.54893 * 104.19444 * 217.10486 * 14 12 10 16 16 C 1.54888 * 102.74773 * 37.94090 * 15 14 12 17 17 C 1.53876 * 110.03320 * 179.97438 * 12 10 9 18 18 C 1.39808 * 120.00029 * 345.45774 * 9 7 2 19 19 C 1.38961 * 120.06183 * 281.39960 * 18 9 7 20 20 C 1.38071 * 119.93767 * 179.74338 * 19 18 9 21 21 C 1.38423 * 120.06127 * 0.51123 * 20 19 18 22 22 Cl 1.73594 * 119.93500 * 179.74463 * 21 20 19 23 23 C 1.38415 * 120.13058 * 359.75986 * 21 20 19 24 24 C 1.38078 * 120.06359 * 359.97438 * 23 21 20 25 25 H 0.97002 * 119.99607 * 5.01250 * 1 2 3 26 26 H 1.08999 * 110.48910 * 335.78333 * 14 12 10 27 27 H 1.09005 * 110.48606 * 98.42772 * 14 12 10 28 28 H 1.09008 * 110.75553 * 279.63101 * 15 14 12 29 29 H 1.08994 * 110.91331 * 156.33150 * 15 14 12 30 30 H 1.09004 * 110.48746 * 203.38005 * 16 15 14 31 31 H 1.09003 * 110.48533 * 80.73663 * 16 15 14 32 32 H 1.08999 * 110.03134 * 238.57163 * 17 12 10 33 33 H 1.08998 * 110.02901 * 0.02562 * 17 12 10 34 34 H 1.08008 * 120.03324 * 359.97438 * 19 18 9 35 35 H 1.07996 * 119.96971 * 180.25061 * 20 19 18 36 36 H 1.07995 * 119.97138 * 179.97438 * 23 21 20 37 37 H 1.08006 * 120.03348 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7084 1.3462 -0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8897 2.3963 1.2126 7 6 2.0086 -1.2028 -0.0005 8 1 3.0569 -1.2210 -0.2596 9 7 1.3631 -2.3673 0.3280 10 6 1.9323 -3.5560 0.0458 11 8 1.4060 -4.5837 0.4170 12 6 3.2227 -3.6081 -0.7308 13 9 4.2169 -2.8914 -0.0562 14 6 3.0137 -3.0229 -2.1427 15 6 3.8939 -3.9116 -3.0564 16 6 3.7083 -5.3216 -2.4430 17 6 3.6647 -5.0697 -0.9212 18 6 0.1120 -2.3215 0.9502 19 6 0.0205 -2.0544 2.3108 20 6 -1.2167 -2.0046 2.9216 21 6 -2.3647 -2.2307 2.1820 22 17 -3.9182 -2.1738 2.9547 23 6 -2.2765 -2.5025 0.8277 24 6 -1.0422 -2.5483 0.2104 25 1 -0.4850 0.8369 -0.0734 26 1 1.9660 -3.0955 -2.4346 27 1 3.3501 -1.9867 -2.1798 28 1 4.9381 -3.6027 -3.0058 29 1 3.5349 -3.8875 -4.0852 30 1 4.5515 -5.9631 -2.6993 31 1 2.7728 -5.7656 -2.7834 32 1 4.6539 -5.2200 -0.4890 33 1 2.9455 -5.7413 -0.4523 34 1 0.9162 -1.8824 2.8893 35 1 -1.2886 -1.7931 3.9782 36 1 -3.1738 -2.6790 0.2532 37 1 -0.9739 -2.7608 -0.8464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843610367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:41 Heat of formation + Delta-G solvation = -59.778356 kcal Electronic energy + Delta-G solvation = -24401.512398 eV Core-core repulsion = 20698.041774 eV Total energy + Delta-G solvation = -3703.470623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.083 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.15811 -39.59533 -37.91101 -36.44794 -35.75599 -34.79454 -31.80954 -30.24513 -29.42728 -28.40241 -27.67680 -25.10711 -22.67502 -21.99045 -20.67778 -20.43409 -19.03753 -18.04183 -17.06962 -16.13792 -15.52358 -15.05763 -14.99298 -14.79302 -14.54164 -14.05082 -13.66995 -13.37986 -13.35094 -12.82654 -12.73550 -12.62895 -12.52502 -11.87477 -11.49021 -11.38275 -11.32623 -11.11696 -10.99415 -10.93330 -10.75729 -10.71860 -10.51292 -10.42911 -10.24859 -10.21263 -10.08423 -9.55115 -8.65221 -8.27469 -8.16025 -7.66615 -6.38984 -4.13267 2.06219 2.22220 2.75981 2.99014 3.14981 3.18606 3.45040 3.88891 4.27661 4.55077 4.73189 4.86000 4.94321 5.10377 5.36835 5.59228 5.59912 5.65414 5.74860 5.76062 5.88411 5.92958 6.09692 6.15146 6.18911 6.25178 6.38445 6.45588 6.53437 6.61425 6.73645 6.76646 6.86198 7.00566 7.31176 7.36283 7.47583 7.70849 8.23751 8.84147 9.14132 9.54702 10.47622 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.005741 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.056627 B = 4875.797219 C = 6196.832915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.354 4.354 8 H 0.118 0.882 9 N -0.398 5.398 10 C 0.445 3.555 11 O -0.583 6.583 12 C 0.125 3.875 13 F -0.196 7.196 14 C -0.126 4.126 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.143 4.143 18 C 0.246 3.754 19 C -0.111 4.111 20 C -0.107 4.107 21 C -0.051 4.051 22 Cl -0.104 7.104 23 C -0.107 4.107 24 C -0.058 4.058 25 H 0.274 0.726 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -3.306 -2.392 4.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.163 4.163 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.480 4.480 8 H 0.136 0.864 9 N -0.113 5.113 10 C 0.233 3.767 11 O -0.467 6.467 12 C 0.103 3.897 13 F -0.177 7.177 14 C -0.164 4.164 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.181 4.181 18 C 0.155 3.845 19 C -0.131 4.131 20 C -0.127 4.127 21 C -0.078 4.078 22 Cl -0.075 7.075 23 C -0.127 4.127 24 C -0.078 4.078 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.042 -3.603 -2.056 4.277 hybrid contribution 0.263 1.365 0.101 1.394 sum 1.305 -2.238 -1.955 3.246 Atomic orbital electron populations 1.69887 1.05796 1.28161 1.44646 1.25301 0.95462 0.99870 0.95637 0.85959 0.80025 0.81300 0.78142 1.18920 1.20542 1.20347 1.20118 0.96194 0.82632 1.49072 0.86445 1.41375 1.14963 1.05741 1.49183 1.20270 0.88318 0.83330 0.84755 1.90565 1.66048 1.33272 1.56862 1.21393 0.84292 0.91608 0.92369 1.92817 1.62885 1.79856 1.82135 1.22826 1.01426 1.00545 0.91619 1.22573 1.00020 0.95062 0.98841 1.22330 1.01648 0.97120 0.94669 1.22727 1.02928 0.95055 0.97389 1.17197 0.85322 0.91901 0.90067 1.20952 0.96586 1.01255 0.94328 1.20557 0.90801 1.02194 0.99136 1.20580 0.84831 1.08971 0.93384 1.98291 1.29930 1.97437 1.81854 1.20566 0.97621 1.02136 0.92367 1.20747 0.90758 0.97502 0.98747 0.91477 0.89930 0.89114 0.91398 0.91305 0.91598 0.91347 0.90763 0.88142 0.86362 0.86317 0.86302 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.74 10.31 55.49 0.57 -20.16 16 2 C 0.05 1.07 5.25 -17.49 -0.09 0.97 16 3 Si 0.92 18.91 29.58 -169.99 -5.03 13.88 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.35 -8.47 8.06 -14.94 -0.12 -8.59 16 8 H 0.12 2.76 4.66 -52.49 -0.24 2.51 16 9 N -0.40 -9.54 2.66 -58.97 -0.16 -9.69 16 10 C 0.44 10.32 6.59 -10.98 -0.07 10.25 16 11 O -0.58 -14.58 15.19 5.56 0.08 -14.49 16 12 C 0.12 2.44 1.08 -90.65 -0.10 2.34 16 13 F -0.20 -4.06 14.74 2.25 0.03 -4.03 16 14 C -0.13 -2.18 5.06 -25.07 -0.13 -2.30 16 15 C -0.13 -1.72 6.91 -24.74 -0.17 -1.90 16 16 C -0.12 -1.62 6.83 -25.05 -0.17 -1.79 16 17 C -0.14 -2.38 6.25 -25.59 -0.16 -2.54 16 18 C 0.25 5.79 2.27 -83.69 -0.19 5.60 16 19 C -0.11 -2.47 9.91 -39.37 -0.39 -2.86 16 20 C -0.11 -2.13 9.82 -39.57 -0.39 -2.51 16 21 C -0.05 -0.99 6.32 -39.45 -0.25 -1.24 16 22 Cl -0.10 -1.71 28.95 -51.86 -1.50 -3.21 16 23 C -0.11 -2.13 9.82 -39.57 -0.39 -2.52 16 24 C -0.06 -1.29 8.70 -39.37 -0.34 -1.63 16 25 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 26 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 27 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 33 H 0.10 1.84 6.39 -51.93 -0.33 1.51 16 34 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.12 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -26.52 322.80 -8.38 -34.91 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.29 Total: 6.66 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.96 Total: -8.73 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.42 Total: -29.86 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.08 Total: -14.49 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.03 Total: -4.03 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.50 Total: -3.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.52 -8.38 -34.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843610367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.871 kcal (2) G-P(sol) polarization free energy of solvation -26.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds