Wall clock time and date at job start Tue Mar 31 2020 10:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39980 * 120.46229 * 236.90463 * 3 2 1 5 5 C 1.38336 * 118.35568 * 180.02562 * 4 3 2 6 6 C 1.39393 * 119.20475 * 359.97438 * 5 4 3 7 7 C 1.48171 * 119.57022 * 180.02562 * 6 5 4 8 8 O 1.21530 * 119.99338 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00458 * 180.02562 * 7 6 5 10 10 C 1.39891 * 119.99849 * 174.89390 * 9 7 6 11 11 C 1.39393 * 119.91683 * 325.51827 * 10 9 7 12 12 C 1.38360 * 120.46693 * 179.76152 * 11 10 9 13 13 C 1.38014 * 120.29168 * 0.51740 * 12 11 10 14 14 F 1.35094 * 120.09279 * 179.71714 * 13 12 11 15 15 C 1.41013 * 119.81483 * 359.74360 * 13 12 11 16 16 C 1.41303 * 120.22735 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99354 * 25.32440 * 16 15 13 18 18 C 1.39915 * 119.99829 * 205.32616 * 16 15 13 19 19 N 1.30847 * 120.00538 * 16.68087 * 18 16 15 20 20 Si 1.86800 * 119.99856 * 196.68458 * 18 16 15 21 21 H 1.48502 * 109.47218 * 59.99726 * 20 18 16 22 22 H 1.48500 * 109.47647 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47310 * 300.00122 * 20 18 16 24 24 C 1.38178 * 119.90949 * 145.79337 * 10 9 7 25 25 N 1.32776 * 120.86968 * 359.97438 * 6 5 4 26 26 C 1.31361 * 121.79639 * 0.04131 * 25 6 5 27 27 H 1.08004 * 120.82522 * 0.02562 * 4 3 2 28 28 H 1.08004 * 120.40148 * 179.72850 * 5 4 3 29 29 H 0.97001 * 119.99606 * 354.89582 * 9 7 6 30 30 H 1.08004 * 119.76806 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.85548 * 180.23118 * 12 11 10 32 32 H 0.97005 * 120.00611 * 180.02562 * 19 18 16 33 33 H 1.07996 * 120.14725 * 359.95613 * 24 10 9 34 34 H 1.08000 * 119.64911 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2774 0.6598 1.0108 5 6 4.6598 0.6331 0.9679 6 6 5.2951 -0.0442 -0.0717 7 6 6.7754 -0.0784 -0.1252 8 8 7.4275 0.4814 0.7341 9 7 7.3987 -0.7303 -1.1267 10 6 8.7921 -0.6734 -1.2378 11 6 9.4711 0.4900 -0.8796 12 6 10.8494 0.5571 -0.9803 13 6 11.5668 -0.5255 -1.4474 14 9 12.9119 -0.4536 -1.5495 15 6 10.8917 -1.7066 -1.8184 16 6 11.6174 -2.8200 -2.2983 17 1 12.6520 -2.9518 -2.0176 18 6 10.9958 -3.7515 -3.1370 19 7 9.8754 -3.4445 -3.7391 20 14 11.7653 -5.4337 -3.3971 21 1 11.8690 -6.1375 -2.0936 22 1 10.9177 -6.2282 -4.3221 23 1 13.1209 -5.2729 -3.9819 24 6 9.4911 -1.7688 -1.7079 25 7 4.5911 -0.6600 -1.0141 26 6 3.2775 -0.6579 -1.0094 27 1 2.7583 1.1764 1.8046 28 1 5.2400 1.1344 1.7285 29 1 6.8811 -1.2389 -1.7704 30 1 8.9178 1.3437 -0.5168 31 1 11.3658 1.4621 -0.6964 32 1 9.4442 -4.0905 -4.3203 33 1 8.9642 -2.6686 -1.9889 34 1 2.7396 -1.1698 -1.7936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190591690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:45 Heat of formation + Delta-G solvation = 8.223363 kcal Electronic energy + Delta-G solvation = -23260.982622 eV Core-core repulsion = 19459.353281 eV Total energy + Delta-G solvation = -3801.629341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.081 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.24133 -41.02087 -39.41449 -37.26583 -36.91437 -34.49022 -33.59355 -32.98499 -32.03769 -29.84304 -28.36797 -25.80138 -25.30225 -24.13967 -21.99122 -21.55697 -20.04217 -19.55755 -18.20625 -17.70578 -17.05078 -16.12802 -15.82173 -15.35867 -15.29936 -15.10374 -14.73365 -14.56089 -14.09949 -14.00289 -13.89000 -13.76978 -13.37282 -13.26240 -12.96738 -12.66441 -12.56483 -12.11815 -11.76782 -11.57617 -11.25964 -11.08874 -10.75963 -10.45398 -10.40258 -10.28922 -9.82293 -9.68459 -9.58962 -9.35367 -9.07075 -7.66229 -7.08944 -6.80240 -4.50522 -0.18108 0.72216 2.09170 2.15302 2.54851 2.68759 3.01288 3.01850 3.05254 3.11915 3.18081 3.34832 3.63703 3.84937 3.86737 4.18066 4.46057 4.51199 4.55905 4.82095 5.25637 5.36694 5.41368 5.47630 5.90621 5.96565 6.06053 6.45943 6.59072 6.75894 6.80867 6.93858 7.05974 7.22445 7.38650 7.48296 7.57259 7.83322 7.87172 8.10044 8.33819 8.50749 8.64626 8.73521 10.03379 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.003179 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.647844 B = 8806.986870 C =10185.251553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.258 3.742 3 C -0.069 4.069 4 C -0.030 4.030 5 C -0.114 4.114 6 C 0.120 3.880 7 C 0.556 3.444 8 O -0.512 6.512 9 N -0.636 5.636 10 C 0.137 3.863 11 C -0.207 4.207 12 C -0.111 4.111 13 C -0.031 4.031 14 F -0.162 7.162 15 C 0.098 3.902 16 C -0.452 4.452 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.791 5.791 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.160 4.160 25 N -0.454 5.454 26 C 0.155 3.845 27 H 0.153 0.847 28 H 0.162 0.838 29 H 0.415 0.585 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.284 0.716 33 H 0.132 0.868 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 3.465 4.428 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.059 4.059 3 C -0.074 4.074 4 C -0.058 4.058 5 C -0.135 4.135 6 C -0.019 4.019 7 C 0.341 3.659 8 O -0.387 6.387 9 N -0.279 5.279 10 C 0.045 3.955 11 C -0.228 4.228 12 C -0.131 4.131 13 C -0.051 4.051 14 F -0.141 7.141 15 C 0.094 3.906 16 C -0.481 4.481 17 H 0.102 0.898 18 C -0.141 4.141 19 N -0.415 5.415 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.182 4.182 25 N -0.165 5.165 26 C -0.008 4.008 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.252 0.748 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.279 3.351 4.186 14.321 hybrid contribution 0.108 -0.555 0.064 0.569 sum -13.171 2.796 4.250 14.119 Atomic orbital electron populations 1.81299 1.11783 1.07699 1.07138 1.25328 0.92183 0.94147 0.94232 1.17167 0.85715 1.04655 0.99897 1.21683 0.93652 0.94245 0.96192 1.22124 0.94156 0.98215 0.98986 1.21657 0.95000 0.93891 0.91338 1.17825 0.85237 0.80505 0.82374 1.90828 1.65141 1.44737 1.37974 1.43273 1.06860 1.49292 1.28479 1.17579 0.80242 0.95190 1.02522 1.20094 0.93034 0.97406 1.12224 1.20366 0.93943 0.96933 1.01820 1.17909 0.76488 0.96211 1.14510 1.91272 1.30808 1.96896 1.95173 1.17344 0.91697 0.90758 0.90805 1.19464 0.99050 1.04816 1.24736 0.89769 1.25897 0.94494 1.00216 0.93543 1.69781 1.15878 1.35355 1.20533 0.86269 0.80005 0.80777 0.79202 1.18677 1.20194 1.18815 1.20912 0.93662 0.96841 1.06758 1.67744 1.07850 1.16594 1.24263 1.22989 0.89161 0.93314 0.95363 0.82955 0.82006 0.74771 0.87103 0.87634 0.90524 0.85048 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.32 18.54 41.84 0.78 -3.54 16 2 C 0.26 2.14 15.36 -22.47 -0.35 1.79 16 3 C -0.07 -0.49 5.75 -106.71 -0.61 -1.11 16 4 C -0.03 -0.19 9.89 -38.89 -0.38 -0.58 16 5 C -0.11 -1.03 9.61 -39.12 -0.38 -1.40 16 6 C 0.12 1.44 6.75 -82.95 -0.56 0.88 16 7 C 0.56 9.05 7.54 -12.18 -0.09 8.96 16 8 O -0.51 -9.64 14.05 5.34 0.08 -9.56 16 9 N -0.64 -11.29 5.32 -10.66 -0.06 -11.34 16 10 C 0.14 2.98 6.24 -83.77 -0.52 2.46 16 11 C -0.21 -4.56 8.65 -39.11 -0.34 -4.90 16 12 C -0.11 -2.52 10.00 -39.62 -0.40 -2.91 16 13 C -0.03 -0.77 7.31 -38.61 -0.28 -1.05 16 14 F -0.16 -4.05 16.71 2.25 0.04 -4.01 16 15 C 0.10 2.54 5.57 -106.78 -0.60 1.94 16 16 C -0.45 -11.68 8.77 -37.79 -0.33 -12.01 16 17 H 0.08 2.16 7.74 -52.49 -0.41 1.76 16 18 C 0.08 1.84 5.16 -17.34 -0.09 1.75 16 19 N -0.79 -18.90 10.94 55.55 0.61 -18.29 16 20 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.16 -3.85 8.59 -38.70 -0.33 -4.18 16 25 N -0.45 -4.94 9.52 -9.47 -0.09 -5.03 16 26 C 0.15 1.22 10.91 -17.15 -0.19 1.03 16 27 H 0.15 0.57 8.06 -52.48 -0.42 0.14 16 28 H 0.16 1.35 7.63 -52.48 -0.40 0.95 16 29 H 0.42 6.61 8.15 -40.82 -0.33 6.27 16 30 H 0.11 2.34 6.47 -52.48 -0.34 2.00 16 31 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 33 H 0.13 3.17 6.18 -52.49 -0.32 2.84 16 34 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -29.27 320.74 -6.50 -35.77 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.21 Total: 7.61 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -5.45 Total: -9.33 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 1.24 Total: -38.21 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.27 -6.50 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190591690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.988 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds