Wall clock time and date at job start Tue Mar 31 2020 10:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39980 * 120.46229 * 236.90463 * 3 2 1 5 5 C 1.38336 * 118.35568 * 180.02562 * 4 3 2 6 6 C 1.39393 * 119.20475 * 359.97438 * 5 4 3 7 7 C 1.48171 * 119.57022 * 180.02562 * 6 5 4 8 8 O 1.21530 * 119.99338 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00458 * 180.02562 * 7 6 5 10 10 C 1.39891 * 119.99849 * 174.89390 * 9 7 6 11 11 C 1.39393 * 119.91683 * 325.51827 * 10 9 7 12 12 C 1.38360 * 120.46693 * 179.76152 * 11 10 9 13 13 C 1.38014 * 120.29168 * 0.51740 * 12 11 10 14 14 F 1.35094 * 120.09279 * 179.71714 * 13 12 11 15 15 C 1.41013 * 119.81483 * 359.74360 * 13 12 11 16 16 C 1.41303 * 120.22735 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99354 * 25.32440 * 16 15 13 18 18 C 1.39915 * 119.99829 * 205.32616 * 16 15 13 19 19 N 1.30847 * 120.00538 * 16.68087 * 18 16 15 20 20 Si 1.86800 * 119.99856 * 196.68458 * 18 16 15 21 21 H 1.48502 * 109.47218 * 59.99726 * 20 18 16 22 22 H 1.48500 * 109.47647 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47310 * 300.00122 * 20 18 16 24 24 C 1.38178 * 119.90949 * 145.79337 * 10 9 7 25 25 N 1.32776 * 120.86968 * 359.97438 * 6 5 4 26 26 C 1.31361 * 121.79639 * 0.04131 * 25 6 5 27 27 H 1.08004 * 120.82522 * 0.02562 * 4 3 2 28 28 H 1.08004 * 120.40148 * 179.72850 * 5 4 3 29 29 H 0.97001 * 119.99606 * 354.89582 * 9 7 6 30 30 H 1.08004 * 119.76806 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.85548 * 180.23118 * 12 11 10 32 32 H 0.97005 * 120.00611 * 180.02562 * 19 18 16 33 33 H 1.07996 * 120.14725 * 359.95613 * 24 10 9 34 34 H 1.08000 * 119.64911 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2774 0.6598 1.0108 5 6 4.6598 0.6331 0.9679 6 6 5.2951 -0.0442 -0.0717 7 6 6.7754 -0.0784 -0.1252 8 8 7.4275 0.4814 0.7341 9 7 7.3987 -0.7303 -1.1267 10 6 8.7921 -0.6734 -1.2378 11 6 9.4711 0.4900 -0.8796 12 6 10.8494 0.5571 -0.9803 13 6 11.5668 -0.5255 -1.4474 14 9 12.9119 -0.4536 -1.5495 15 6 10.8917 -1.7066 -1.8184 16 6 11.6174 -2.8200 -2.2983 17 1 12.6520 -2.9518 -2.0176 18 6 10.9958 -3.7515 -3.1370 19 7 9.8754 -3.4445 -3.7391 20 14 11.7653 -5.4337 -3.3971 21 1 11.8690 -6.1375 -2.0936 22 1 10.9177 -6.2282 -4.3221 23 1 13.1209 -5.2729 -3.9819 24 6 9.4911 -1.7688 -1.7079 25 7 4.5911 -0.6600 -1.0141 26 6 3.2775 -0.6579 -1.0094 27 1 2.7583 1.1764 1.8046 28 1 5.2400 1.1344 1.7285 29 1 6.8811 -1.2389 -1.7704 30 1 8.9178 1.3437 -0.5168 31 1 11.3658 1.4621 -0.6964 32 1 9.4442 -4.0905 -4.3203 33 1 8.9642 -2.6686 -1.9889 34 1 2.7396 -1.1698 -1.7936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190591690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:44 Heat of formation + Delta-G solvation = -8.722456 kcal Electronic energy + Delta-G solvation = -23261.717448 eV Core-core repulsion = 19459.353281 eV Total energy + Delta-G solvation = -3802.364167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.16817 -41.95788 -40.66419 -38.85728 -37.75222 -36.10146 -35.16679 -33.85798 -32.83836 -31.68731 -29.98270 -27.32942 -26.62171 -24.81613 -23.56837 -23.15152 -21.59936 -20.24848 -19.43187 -19.37388 -18.08731 -17.93964 -17.34499 -16.89947 -16.53780 -16.25719 -15.92963 -15.90019 -15.53970 -15.29730 -14.97018 -14.61037 -14.42837 -14.35142 -14.14135 -14.11584 -13.93478 -13.50104 -13.34940 -13.31917 -12.95546 -12.77447 -12.44658 -12.06385 -11.57527 -11.39054 -11.14817 -11.10900 -10.86059 -10.64813 -10.35615 -9.52708 -8.86892 -8.57495 -6.42871 -0.95853 0.10235 0.62560 0.88304 1.36074 1.40883 1.47767 1.51094 1.55118 1.99312 2.07575 2.21200 2.56181 2.64595 2.80530 3.01754 3.49423 3.60388 3.68942 3.84734 4.02543 4.05384 4.30093 4.66123 4.67108 4.74589 4.84561 4.94903 4.99325 5.03525 5.23720 5.30786 5.60318 5.73150 5.75451 5.97317 6.10063 6.26157 6.37874 6.54426 6.67525 6.76861 6.82334 7.10897 8.26178 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.003179 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.647844 B = 8806.986870 C =10185.251553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.285 3.715 3 C -0.054 4.054 4 C -0.008 4.008 5 C -0.107 4.107 6 C 0.097 3.903 7 C 0.559 3.441 8 O -0.541 6.541 9 N -0.639 5.639 10 C 0.148 3.852 11 C -0.209 4.209 12 C -0.106 4.106 13 C -0.066 4.066 14 F -0.169 7.169 15 C 0.072 3.928 16 C -0.490 4.490 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.809 5.809 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.176 4.176 25 N -0.474 5.474 26 C 0.159 3.841 27 H 0.190 0.810 28 H 0.168 0.832 29 H 0.423 0.577 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.295 0.705 33 H 0.126 0.874 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 3.396 4.822 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.031 4.031 3 C -0.060 4.060 4 C -0.036 4.036 5 C -0.128 4.128 6 C -0.040 4.040 7 C 0.346 3.654 8 O -0.417 6.417 9 N -0.283 5.283 10 C 0.055 3.945 11 C -0.230 4.230 12 C -0.125 4.125 13 C -0.087 4.087 14 F -0.148 7.148 15 C 0.068 3.932 16 C -0.518 4.518 17 H 0.090 0.910 18 C -0.175 4.175 19 N -0.433 5.433 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.198 4.198 25 N -0.184 5.184 26 C -0.004 4.004 27 H 0.207 0.793 28 H 0.186 0.814 29 H 0.262 0.738 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -15.643 3.300 4.581 16.631 hybrid contribution 0.653 -0.446 -0.022 0.791 sum -14.990 2.854 4.559 15.926 Atomic orbital electron populations 1.81353 1.12940 1.08948 1.08391 1.25205 0.91886 0.92958 0.93034 1.17145 0.85038 1.04032 0.99746 1.22006 0.92424 0.92822 0.96307 1.22195 0.95181 0.97400 0.97985 1.21075 0.92397 0.96902 0.93604 1.18438 0.87222 0.78786 0.80985 1.90797 1.66574 1.45607 1.38761 1.43260 1.05241 1.50231 1.29576 1.17623 0.82279 0.94235 1.00364 1.20312 0.92974 0.97828 1.11922 1.20644 0.94292 0.97078 1.00520 1.18173 0.76548 0.97144 1.16821 1.91234 1.31181 1.96969 1.95445 1.17718 0.92830 0.91314 0.91293 1.19630 0.99010 1.06510 1.26684 0.90974 1.26657 0.94962 1.03254 0.92578 1.69793 1.16503 1.36712 1.20329 0.85236 0.79123 0.76035 0.79285 1.18553 1.18326 1.18892 1.20854 0.93216 0.97484 1.08228 1.67648 1.09186 1.17190 1.24414 1.23372 0.88098 0.92940 0.96028 0.79322 0.81417 0.73842 0.85876 0.85181 0.89428 0.85656 0.78380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.32 18.54 19.00 0.35 -7.97 16 2 C 0.29 3.80 15.36 88.33 1.36 5.16 16 3 C -0.05 -0.58 5.75 -21.22 -0.12 -0.70 16 4 C -0.01 -0.07 9.89 22.72 0.22 0.15 16 5 C -0.11 -1.63 9.61 22.57 0.22 -1.41 16 6 C 0.10 2.19 6.75 41.92 0.28 2.47 16 7 C 0.56 17.90 7.54 86.88 0.65 18.55 16 8 O -0.54 -20.14 14.05 -3.81 -0.05 -20.20 16 9 N -0.64 -22.73 5.32 -305.92 -1.63 -24.36 16 10 C 0.15 6.57 6.24 38.12 0.24 6.81 16 11 C -0.21 -9.28 8.65 22.58 0.20 -9.08 16 12 C -0.11 -4.86 10.00 22.25 0.22 -4.64 16 13 C -0.07 -3.45 7.31 22.90 0.17 -3.28 16 14 F -0.17 -8.76 16.71 44.97 0.75 -8.01 16 15 C 0.07 3.89 5.57 -21.26 -0.12 3.78 16 16 C -0.49 -26.35 8.77 23.43 0.21 -26.14 16 17 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 18 C 0.04 2.05 5.16 85.25 0.44 2.49 16 19 N -0.81 -39.08 10.94 21.82 0.24 -38.84 16 20 Si 0.98 36.82 29.59 68.60 2.03 38.85 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 C -0.18 -8.73 8.59 22.84 0.20 -8.54 16 25 N -0.47 -9.42 9.52 -183.89 -1.75 -11.17 16 26 C 0.16 2.04 10.91 85.15 0.93 2.97 16 27 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 28 H 0.17 2.39 7.63 -2.91 -0.02 2.37 16 29 H 0.42 13.51 8.15 -92.71 -0.76 12.76 16 30 H 0.12 5.13 6.47 -2.91 -0.02 5.11 16 31 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 32 H 0.29 12.68 8.30 -92.70 -0.77 11.91 16 33 H 0.13 6.25 6.18 -2.91 -0.02 6.23 16 34 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -65.72 320.74 5.48 -60.24 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.44 Total: 22.86 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.09 Total: -11.41 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.79 Total: -82.34 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.75 Total: -8.01 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -65.72 5.48 -60.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190591690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.522 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds