Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00385 * 2 1 4 4 H 1.48498 * 109.47129 * 270.00280 * 3 2 1 5 5 H 1.48504 * 109.47102 * 29.99931 * 3 2 1 6 6 H 1.48500 * 109.47674 * 149.99800 * 3 2 1 7 7 C 1.37879 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00407 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99624 * 359.72014 * 7 2 1 10 10 O 1.42095 * 106.40610 * 293.54037 * 9 7 2 11 11 O 1.42107 * 106.40066 * 66.46317 * 9 7 2 12 12 N 1.65601 * 107.21751 * 180.02562 * 9 7 2 13 13 C 1.46501 * 120.00017 * 57.45373 * 12 9 7 14 14 C 1.50696 * 109.54112 * 292.08381 * 13 12 9 15 15 C 1.38236 * 119.99792 * 125.46217 * 14 13 12 16 16 C 1.38241 * 119.99573 * 179.73937 * 15 14 13 17 17 C 1.38237 * 120.00051 * 0.53113 * 16 15 14 18 18 C 1.38235 * 119.99985 * 359.74564 * 17 16 15 19 19 C 1.38236 * 120.00042 * 359.97438 * 18 17 16 20 20 C 1.53183 * 109.54530 * 171.90421 * 13 12 9 21 21 C 1.53276 * 109.06162 * 297.03110 * 20 13 12 22 22 O 1.42903 * 109.46426 * 302.44293 * 21 20 13 23 23 C 1.42905 * 114.09399 * 61.16057 * 22 21 20 24 24 C 1.53090 * 109.41660 * 298.84107 * 23 22 21 25 25 H 0.97008 * 119.99533 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99857 * 237.45414 * 12 9 7 27 27 H 1.07998 * 120.00458 * 359.97438 * 15 14 13 28 28 H 1.08004 * 120.00153 * 180.29277 * 16 15 14 29 29 H 1.07997 * 119.99711 * 179.76386 * 17 16 15 30 30 H 1.07998 * 119.99670 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.00073 * 180.02562 * 19 18 17 32 32 H 1.08997 * 109.51737 * 57.01784 * 20 13 12 33 33 H 1.08991 * 109.51937 * 177.20820 * 20 13 12 34 34 H 1.08999 * 109.46131 * 182.44754 * 21 20 13 35 35 H 1.09004 * 109.46971 * 62.44572 * 21 20 13 36 36 H 1.09005 * 109.47750 * 178.86467 * 23 22 21 37 37 H 1.08994 * 109.49444 * 58.83271 * 23 22 21 38 38 H 1.09003 * 109.52776 * 297.70941 * 24 23 22 39 39 H 1.08999 * 109.52331 * 177.51877 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 0.0062 10 8 0.4566 -2.7928 1.2589 11 8 0.4461 -2.7977 -1.2406 12 7 2.2482 -3.9354 0.0046 13 6 3.2508 -4.0071 1.0704 14 6 4.1994 -2.8425 0.9492 15 6 4.4060 -2.0041 2.0288 16 6 5.2804 -0.9389 1.9192 17 6 5.9397 -0.7057 0.7268 18 6 5.7287 -1.5407 -0.3545 19 6 4.8588 -2.6093 -0.2432 20 6 4.0323 -5.3192 0.9514 21 6 3.0703 -6.4950 1.1546 22 8 2.4328 -6.3741 2.4279 23 6 1.6502 -5.1879 2.5782 24 6 2.5537 -3.9605 2.4336 25 1 -0.4850 0.8402 0.0004 26 1 2.2432 -4.5999 -0.7021 27 1 3.8873 -2.1835 2.9589 28 1 5.4454 -0.2867 2.7641 29 1 6.6198 0.1287 0.6401 30 1 6.2442 -1.3587 -1.2859 31 1 4.6943 -3.2619 -1.0878 32 1 4.4866 -5.3841 -0.0372 33 1 4.8107 -5.3498 1.7138 34 1 3.6273 -7.4311 1.1145 35 1 2.3156 -6.4871 0.3681 36 1 1.1844 -5.1822 3.5637 37 1 0.8770 -5.1626 1.8105 38 1 3.3024 -3.9638 3.2258 39 1 1.9515 -3.0546 2.5040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -103.193016 kcal Electronic energy + Delta-G solvation = -25934.952866 eV Core-core repulsion = 22355.103654 eV Total energy + Delta-G solvation = -3579.849213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15662 -38.20161 -35.45302 -35.01461 -33.97163 -33.03323 -31.19661 -30.61824 -30.21036 -29.44183 -26.00778 -24.53593 -23.75148 -21.75204 -21.28306 -19.57456 -18.80048 -17.27131 -16.95108 -16.53798 -15.75106 -15.63020 -15.26491 -14.86904 -14.78780 -14.38770 -13.96598 -13.90938 -13.41757 -13.06393 -13.03577 -12.89803 -12.49375 -12.26456 -11.98967 -11.87070 -11.20112 -11.15873 -11.07160 -10.93147 -10.86816 -10.50032 -10.44605 -10.31293 -10.26017 -10.14321 -9.61479 -9.38903 -9.19413 -8.92469 -8.60602 -8.41682 -8.11239 -6.64972 -5.22344 1.75683 1.88701 2.36338 3.08578 3.15845 3.24300 4.08752 4.17844 4.18437 4.69428 4.76113 4.87034 4.92310 5.09103 5.28002 5.37855 5.40371 5.45888 5.53233 5.70079 5.71093 5.82402 5.85755 5.94643 5.99749 6.08237 6.09207 6.27111 6.34171 6.39630 6.46650 6.52064 6.66929 6.86539 6.93292 6.94720 7.12504 7.41148 7.44023 7.51811 7.83028 8.13571 8.98949 10.29482 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.008626 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.744673 B = 3245.124181 C = 4388.446943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.139 3.861 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.255 1.255 7 C -1.013 5.013 8 H 0.120 0.880 9 S 2.709 3.291 10 O -1.003 7.003 11 O -1.011 7.011 12 N -1.127 6.127 13 C 0.233 3.767 14 C -0.084 4.084 15 C -0.094 4.094 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.146 4.146 21 C 0.062 3.938 22 O -0.390 6.390 23 C 0.071 3.929 24 C -0.184 4.184 25 H 0.288 0.712 26 H 0.401 0.599 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 -6.361 2.879 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.078 4.078 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.178 1.178 7 C -1.147 5.147 8 H 0.138 0.862 9 S 2.810 3.190 10 O -0.993 6.993 11 O -1.002 7.002 12 N -0.880 5.880 13 C 0.144 3.856 14 C -0.085 4.085 15 C -0.113 4.113 16 C -0.139 4.139 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.111 4.111 20 C -0.185 4.185 21 C -0.015 4.015 22 O -0.310 6.310 23 C -0.005 4.005 24 C -0.222 4.222 25 H 0.098 0.902 26 H 0.232 0.768 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.050 -6.444 3.179 12.355 hybrid contribution 0.901 1.454 -0.741 1.864 sum 10.951 -4.990 2.439 12.279 Atomic orbital electron populations 1.69915 1.06787 1.30409 1.40918 1.24648 0.94183 1.00491 0.88514 0.86345 0.80808 0.80587 0.79162 1.19515 1.20356 1.17842 1.30795 1.07253 1.10762 1.65888 0.86247 1.00555 0.72057 0.73554 0.72861 1.93310 1.73384 1.87525 1.45052 1.93371 1.73200 1.87680 1.45925 1.56183 1.49401 1.47191 1.35218 1.18640 0.86935 0.92395 0.87647 1.20035 0.97344 0.96844 0.94296 1.21102 0.97012 0.94261 0.98895 1.21017 0.97505 0.97637 0.97722 1.21030 1.00240 0.99078 0.93644 1.20993 0.99374 0.95740 0.98287 1.20818 0.95826 0.97655 0.96846 1.22457 0.98781 0.94066 1.03230 1.22536 0.94947 0.97539 0.86448 1.87854 1.66328 1.42604 1.34167 1.22506 0.92669 0.82958 1.02405 1.23079 1.00554 1.02934 0.95682 0.90196 0.76831 0.85566 0.86634 0.86933 0.86631 0.86387 0.90352 0.89997 0.89272 0.93059 0.88948 0.92251 0.90574 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.66 13.19 55.43 0.73 -23.93 16 2 C 0.14 3.79 5.46 -17.82 -0.10 3.69 16 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.25 -5.50 7.11 56.52 0.40 -5.10 16 7 C -1.01 -26.54 8.60 30.60 0.26 -26.27 16 8 H 0.12 2.87 3.68 -52.49 -0.19 2.67 16 9 S 2.71 68.79 4.83 -107.50 -0.52 68.27 16 10 O -1.00 -26.94 13.73 -57.17 -0.78 -27.72 16 11 O -1.01 -29.42 18.02 -57.17 -1.03 -30.45 16 12 N -1.13 -21.25 4.31 -0.25 0.00 -21.25 16 13 C 0.23 3.86 0.54 -132.78 -0.07 3.79 16 14 C -0.08 -1.42 2.64 -104.63 -0.28 -1.70 16 15 C -0.09 -1.59 8.35 -39.58 -0.33 -1.92 16 16 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 17 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 18 C -0.13 -1.95 9.82 -39.58 -0.39 -2.34 16 19 C -0.09 -1.52 7.71 -39.58 -0.31 -1.82 16 20 C -0.15 -1.90 4.79 -26.49 -0.13 -2.03 16 21 C 0.06 0.81 6.67 37.30 0.25 1.06 16 22 O -0.39 -6.08 10.77 -35.23 -0.38 -6.46 16 23 C 0.07 1.20 6.36 37.20 0.24 1.43 16 24 C -0.18 -3.18 3.07 -26.59 -0.08 -3.26 16 25 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.40 6.51 7.95 -34.47 -0.27 6.24 16 27 H 0.13 1.99 5.90 -52.49 -0.31 1.68 16 28 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.74 7.98 -52.49 -0.42 1.32 16 32 H 0.08 0.88 7.89 -51.93 -0.41 0.48 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.66 7.28 -51.93 -0.38 0.29 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.06 1.10 6.95 -51.93 -0.36 0.74 16 38 H 0.08 1.13 7.08 -51.93 -0.37 0.77 16 39 H 0.12 2.51 5.31 -51.93 -0.28 2.24 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -33.96 316.73 -8.62 -42.58 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.66 Total: 12.61 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -1.73 Total: -33.95 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.73 Total: -45.18 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -2.19 Total: -64.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 68.79 SS G_CDS: -0.52 Total: 68.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.96 -8.62 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.615 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds