Wall clock time and date at job start Tue Mar 31 2020 10:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47052 * 2 1 4 4 C 1.34229 * 117.00146 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99991 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46849 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.46925 * 54.92526 * 7 6 4 9 9 C 1.50699 * 109.46966 * 174.92044 * 7 6 4 10 10 H 1.08004 * 119.99972 * 245.40469 * 9 7 6 11 11 C 1.37870 * 120.00057 * 65.40441 * 9 7 6 12 12 N 1.31516 * 119.99944 * 6.30222 * 11 9 7 13 13 Si 1.86805 * 120.00077 * 186.30186 * 11 9 7 14 14 H 1.48493 * 109.47129 * 84.98765 * 13 11 9 15 15 H 1.48504 * 109.46932 * 204.98729 * 13 11 9 16 16 H 1.48501 * 109.46935 * 324.98486 * 13 11 9 17 17 O 1.42896 * 109.47516 * 294.92290 * 7 6 4 18 18 C 1.35459 * 117.00398 * 149.99976 * 17 7 6 19 19 N 1.32321 * 119.19235 * 359.72817 * 18 17 7 20 20 C 1.32295 * 120.75439 * 179.75930 * 19 18 17 21 21 C 1.38591 * 119.17952 * 0.50730 * 20 19 18 22 22 N 1.48001 * 120.74508 * 179.76935 * 21 20 19 23 23 O 1.21793 * 120.00561 * 179.97438 * 22 21 20 24 24 O 1.21808 * 119.99684 * 359.97438 * 22 21 20 25 25 C 1.38594 * 118.51802 * 359.74815 * 21 20 19 26 26 N 1.32300 * 119.17863 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46965 * 60.00396 * 1 2 3 28 28 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47686 * 299.99777 * 1 2 3 30 30 H 1.08998 * 109.47686 * 240.00223 * 2 1 3 31 31 H 1.08997 * 109.47377 * 119.99930 * 2 1 3 32 32 H 1.08997 * 109.47266 * 59.99919 * 6 4 3 33 33 H 1.08999 * 109.46936 * 299.99513 * 6 4 3 34 34 H 0.97003 * 120.00236 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.40939 * 180.23433 * 20 19 18 36 36 H 1.08008 * 120.41343 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7804 2.2491 -0.8404 9 6 6.0242 4.2446 -0.1241 10 1 6.5862 4.5186 -1.0048 11 6 5.8333 5.1639 0.8855 12 7 5.2578 4.7962 2.0094 13 14 6.3922 6.9317 0.6570 14 1 5.3337 7.6983 -0.0478 15 1 6.6472 7.5457 1.9849 16 1 7.6402 6.9562 -0.1475 17 8 5.8947 2.2651 1.2225 18 6 7.0498 1.5589 1.1776 19 7 7.6945 1.4486 0.0274 20 6 8.8276 0.7702 -0.0506 21 6 9.3314 0.1631 1.0888 22 7 10.5935 -0.6085 1.0399 23 8 11.0243 -1.1362 2.0495 24 8 11.2013 -0.7158 -0.0102 25 6 8.6274 0.2949 2.2753 26 7 7.5026 0.9915 2.2839 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5843 3.4694 0.8911 33 1 3.5850 3.4699 -0.8888 34 1 5.1238 5.4429 2.7199 35 1 9.3512 0.6869 -0.9915 36 1 8.9919 -0.1660 3.1815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226731253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:03 Heat of formation + Delta-G solvation = -72.325056 kcal Electronic energy + Delta-G solvation = -25742.738055 eV Core-core repulsion = 21617.934163 eV Total energy + Delta-G solvation = -4124.803892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05924 -40.83626 -40.00724 -37.83973 -36.38229 -36.14394 -33.86724 -33.57683 -31.90754 -31.72444 -30.52181 -26.65753 -26.25841 -24.86176 -23.54119 -22.94913 -21.94356 -20.25576 -19.19125 -18.80887 -18.62350 -17.50738 -17.38477 -17.21681 -16.35828 -16.27183 -15.79662 -15.43559 -14.99140 -14.73677 -14.03053 -13.82575 -13.35056 -13.30294 -12.79117 -12.55914 -12.29396 -12.19998 -11.84807 -11.70460 -11.43870 -11.41965 -11.17797 -11.15140 -11.02586 -10.98117 -10.80596 -10.72402 -10.32357 -10.08080 -9.93878 -9.79987 -9.06028 -8.97991 -8.67911 -6.48361 -4.68964 0.08320 1.05233 1.57356 1.57880 2.74945 3.01641 3.04967 3.14852 3.16508 3.22017 3.82548 4.06702 4.08367 4.23068 4.54573 4.74046 4.95187 4.96451 5.01436 5.21286 5.31641 5.49617 5.69293 5.77661 5.80086 5.94452 6.01657 6.22804 6.43092 6.45413 6.72656 6.83274 6.92919 7.43520 7.58897 7.70465 7.84728 8.22639 8.27379 8.51188 9.08035 10.53543 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.009468 B = 0.005210 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.482322 B = 5373.497524 C = 7704.800044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.458 3.542 5 O -0.518 6.518 6 C -0.099 4.099 7 C 0.219 3.781 8 H 0.063 0.937 9 C -0.556 4.556 10 H 0.077 0.923 11 C 0.080 3.920 12 N -0.849 5.849 13 Si 0.900 3.100 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.228 6.228 18 C 0.571 3.429 19 N -0.541 5.541 20 C 0.265 3.735 21 C -0.239 4.239 22 N 0.059 4.941 23 O -0.176 6.176 24 O -0.175 6.175 25 C 0.263 3.737 26 N -0.524 5.524 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.272 0.728 35 H 0.188 0.812 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -6.138 -2.587 7.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.406 6.406 6 C -0.137 4.137 7 C 0.165 3.835 8 H 0.081 0.919 9 C -0.592 4.592 10 H 0.095 0.905 11 C -0.130 4.130 12 N -0.482 5.482 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.122 6.122 18 C 0.276 3.724 19 N -0.272 5.272 20 C 0.093 3.907 21 C -0.332 4.332 22 N 0.573 4.427 23 O -0.389 6.389 24 O -0.388 6.388 25 C 0.091 3.909 26 N -0.252 5.252 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.205 0.795 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.989 -5.293 -2.163 7.588 hybrid contribution 1.386 0.186 -0.124 1.404 sum -3.603 -5.107 -2.286 6.655 Atomic orbital electron populations 1.21782 0.93071 1.02493 1.03411 1.22899 0.95027 0.81412 1.02158 1.86562 1.25718 1.31344 1.84506 1.24747 0.79762 0.94043 0.71170 1.90597 1.60353 1.43666 1.45963 1.21829 0.96056 0.88698 1.07116 1.20215 0.88529 0.93464 0.81243 0.91922 1.21351 1.37338 0.94460 1.06059 0.90471 1.25200 0.93610 0.99659 0.94508 1.69993 1.38957 1.35155 1.04122 0.86463 0.79596 0.83369 0.77950 1.19714 1.20822 1.19518 1.86513 1.28771 1.55884 1.41052 1.21465 0.86438 0.81315 0.83164 1.68684 1.09041 1.21469 1.28014 1.23004 0.88184 0.82476 0.97048 1.22670 0.94060 1.14901 1.01521 1.43078 1.01062 0.98449 1.00116 1.94505 1.70927 1.48223 1.25207 1.94513 1.58585 1.66059 1.19631 1.23039 0.85599 0.86136 0.96129 1.68151 1.13850 1.14048 1.29103 0.91625 0.90694 0.91519 0.91743 0.91646 0.85280 0.86799 0.91831 0.79512 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -6.20 10.22 -39.26 -0.40 -6.60 16 4 C 0.46 9.01 7.84 36.01 0.28 9.29 16 5 O -0.52 -11.32 15.17 -24.03 -0.36 -11.68 16 6 C -0.10 -2.02 5.30 -27.88 -0.15 -2.16 16 7 C 0.22 5.01 1.58 -27.88 -0.04 4.96 16 8 H 0.06 1.43 6.76 -51.92 -0.35 1.08 16 9 C -0.56 -13.40 8.87 -34.44 -0.31 -13.71 16 10 H 0.08 1.85 7.82 -52.48 -0.41 1.44 16 11 C 0.08 1.93 5.23 -17.82 -0.09 1.84 16 12 N -0.85 -21.47 11.23 55.43 0.62 -20.85 16 13 Si 0.90 19.01 29.54 -169.99 -5.02 13.99 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 O -0.23 -5.56 8.00 -32.44 -0.26 -5.82 16 18 C 0.57 12.71 8.45 -91.25 -0.77 11.94 16 19 N -0.54 -10.91 8.66 -14.73 -0.13 -11.04 16 20 C 0.27 4.37 10.82 -17.22 -0.19 4.19 16 21 C -0.24 -3.86 6.89 -79.69 -0.55 -4.41 16 22 N 0.06 0.95 4.45 34.09 0.15 1.10 16 23 O -0.18 -2.82 18.54 -29.46 -0.55 -3.37 16 24 O -0.18 -2.82 18.54 -29.46 -0.55 -3.37 16 25 C 0.26 4.30 10.82 -17.22 -0.19 4.11 16 26 N -0.52 -10.65 10.46 -14.73 -0.15 -10.81 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.13 2.83 6.89 -51.93 -0.36 2.47 16 33 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.19 2.45 7.70 -52.49 -0.40 2.04 16 36 H 0.19 2.41 7.70 -52.48 -0.40 2.00 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -28.62 332.43 -6.62 -35.25 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.60 Total: 2.21 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: -1.39 Total: 15.98 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.49 Total: -41.60 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -2.12 Total: -30.84 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.62 -6.62 -35.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226731253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.077 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds