Wall clock time and date at job start Tue Mar 31 2020 10:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47052 * 2 1 4 4 C 1.34229 * 117.00146 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99991 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46849 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.46925 * 54.92526 * 7 6 4 9 9 C 1.50699 * 109.46966 * 174.92044 * 7 6 4 10 10 H 1.08004 * 119.99972 * 245.40469 * 9 7 6 11 11 C 1.37870 * 120.00057 * 65.40441 * 9 7 6 12 12 N 1.31516 * 119.99944 * 6.30222 * 11 9 7 13 13 Si 1.86805 * 120.00077 * 186.30186 * 11 9 7 14 14 H 1.48493 * 109.47129 * 84.98765 * 13 11 9 15 15 H 1.48504 * 109.46932 * 204.98729 * 13 11 9 16 16 H 1.48501 * 109.46935 * 324.98486 * 13 11 9 17 17 O 1.42896 * 109.47516 * 294.92290 * 7 6 4 18 18 C 1.35459 * 117.00398 * 149.99976 * 17 7 6 19 19 N 1.32321 * 119.19235 * 359.72817 * 18 17 7 20 20 C 1.32295 * 120.75439 * 179.75930 * 19 18 17 21 21 C 1.38591 * 119.17952 * 0.50730 * 20 19 18 22 22 N 1.48001 * 120.74508 * 179.76935 * 21 20 19 23 23 O 1.21793 * 120.00561 * 179.97438 * 22 21 20 24 24 O 1.21808 * 119.99684 * 359.97438 * 22 21 20 25 25 C 1.38594 * 118.51802 * 359.74815 * 21 20 19 26 26 N 1.32300 * 119.17863 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46965 * 60.00396 * 1 2 3 28 28 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47686 * 299.99777 * 1 2 3 30 30 H 1.08998 * 109.47686 * 240.00223 * 2 1 3 31 31 H 1.08997 * 109.47377 * 119.99930 * 2 1 3 32 32 H 1.08997 * 109.47266 * 59.99919 * 6 4 3 33 33 H 1.08999 * 109.46936 * 299.99513 * 6 4 3 34 34 H 0.97003 * 120.00236 * 179.97438 * 12 11 9 35 35 H 1.08001 * 120.40939 * 180.23433 * 20 19 18 36 36 H 1.08008 * 120.41343 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7804 2.2491 -0.8404 9 6 6.0242 4.2446 -0.1241 10 1 6.5862 4.5186 -1.0048 11 6 5.8333 5.1639 0.8855 12 7 5.2578 4.7962 2.0094 13 14 6.3922 6.9317 0.6570 14 1 5.3337 7.6983 -0.0478 15 1 6.6472 7.5457 1.9849 16 1 7.6402 6.9562 -0.1475 17 8 5.8947 2.2651 1.2225 18 6 7.0498 1.5589 1.1776 19 7 7.6945 1.4486 0.0274 20 6 8.8276 0.7702 -0.0506 21 6 9.3314 0.1631 1.0888 22 7 10.5935 -0.6085 1.0399 23 8 11.0243 -1.1362 2.0495 24 8 11.2013 -0.7158 -0.0102 25 6 8.6274 0.2949 2.2753 26 7 7.5026 0.9915 2.2839 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5843 3.4694 0.8911 33 1 3.5850 3.4699 -0.8888 34 1 5.1238 5.4429 2.7199 35 1 9.3512 0.6869 -0.9915 36 1 8.9919 -0.1660 3.1815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226731253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:02 Heat of formation + Delta-G solvation = -90.119815 kcal Electronic energy + Delta-G solvation = -25743.509693 eV Core-core repulsion = 21617.934163 eV Total energy + Delta-G solvation = -4125.575531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40705 -42.29510 -41.50064 -39.44704 -37.69609 -37.61080 -35.42055 -35.22007 -33.42039 -32.90586 -32.01856 -28.31864 -27.70389 -26.28752 -24.94929 -24.26006 -23.36757 -21.77247 -20.53327 -20.27470 -20.15003 -19.03896 -18.70777 -18.67429 -17.94749 -17.67993 -17.37891 -16.94426 -16.51708 -16.35886 -15.31901 -15.17007 -14.89933 -14.76715 -14.12736 -13.81142 -13.67405 -13.64425 -13.39523 -13.06856 -12.84741 -12.74094 -12.72686 -12.53256 -12.50170 -12.44145 -12.28020 -12.10551 -11.74965 -11.64539 -11.54011 -11.39413 -10.81313 -10.53589 -10.30888 -8.30341 -6.56482 -1.28895 -0.31258 0.19666 0.21448 1.19628 1.37183 1.42801 1.50402 1.60635 1.76131 2.30588 2.36554 2.66452 2.93555 3.00287 3.20852 3.45270 3.83535 3.96402 4.07817 4.21223 4.29937 4.32911 4.43032 4.51889 4.79619 4.86943 4.90003 5.08491 5.11162 5.18710 5.39078 5.43933 5.58351 5.81356 6.11556 6.52568 6.54634 6.75595 6.82417 7.23637 8.71180 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.009468 B = 0.005210 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.482322 B = 5373.497524 C = 7704.800044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.543 6.543 6 C -0.095 4.095 7 C 0.221 3.779 8 H 0.054 0.946 9 C -0.567 4.567 10 H 0.072 0.928 11 C 0.044 3.956 12 N -0.875 5.875 13 Si 0.956 3.044 14 H -0.259 1.259 15 H -0.287 1.287 16 H -0.274 1.274 17 O -0.256 6.256 18 C 0.550 3.450 19 N -0.561 5.561 20 C 0.267 3.733 21 C -0.230 4.230 22 N 0.059 4.941 23 O -0.167 6.167 24 O -0.171 6.171 25 C 0.270 3.730 26 N -0.549 5.549 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.270 0.730 35 H 0.221 0.779 36 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -6.709 -3.020 7.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.280 6.280 4 C 0.310 3.690 5 O -0.434 6.434 6 C -0.132 4.132 7 C 0.168 3.832 8 H 0.072 0.928 9 C -0.603 4.603 10 H 0.090 0.910 11 C -0.163 4.163 12 N -0.510 5.510 13 Si 0.780 3.220 14 H -0.184 1.184 15 H -0.213 1.213 16 H -0.199 1.199 17 O -0.151 6.151 18 C 0.254 3.746 19 N -0.293 5.293 20 C 0.097 3.903 21 C -0.322 4.322 22 N 0.575 4.425 23 O -0.382 6.382 24 O -0.385 6.385 25 C 0.099 3.901 26 N -0.278 5.278 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.718 -5.880 -2.616 7.980 hybrid contribution 1.412 0.174 0.009 1.423 sum -3.306 -5.705 -2.607 7.091 Atomic orbital electron populations 1.21811 0.89829 1.04471 1.03799 1.23292 0.97523 0.79543 1.02069 1.86542 1.23987 1.33624 1.83830 1.24484 0.80527 0.93349 0.70615 1.90578 1.61178 1.44299 1.47298 1.21693 0.94908 0.89366 1.07245 1.20154 0.89682 0.92617 0.80795 0.92796 1.21506 1.37463 0.95454 1.05924 0.91020 1.25790 0.93681 1.02659 0.94167 1.70103 1.40213 1.35963 1.04691 0.85606 0.79231 0.79659 0.77468 1.18393 1.21266 1.19855 1.86428 1.30183 1.57169 1.41350 1.21647 0.86485 0.82159 0.84337 1.68668 1.10359 1.22756 1.27472 1.23526 0.87080 0.81147 0.98520 1.22684 0.94003 1.14142 1.01384 1.42985 1.00852 0.98444 1.00219 1.94515 1.70658 1.47848 1.25143 1.94527 1.58371 1.65952 1.19607 1.23600 0.84205 0.84727 0.97531 1.68143 1.15549 1.15214 1.28879 0.90875 0.87875 0.91473 0.91346 0.92337 0.86948 0.84718 0.92019 0.76282 0.75642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.29 71.98 0.74 -1.80 16 2 C 0.05 1.31 6.19 71.98 0.45 1.75 16 3 O -0.36 -12.29 10.22 -51.41 -0.53 -12.82 16 4 C 0.46 18.57 7.84 71.24 0.56 19.13 16 5 O -0.54 -24.25 15.17 27.03 0.41 -23.84 16 6 C -0.09 -3.93 5.30 29.85 0.16 -3.77 16 7 C 0.22 10.38 1.58 29.85 0.05 10.43 16 8 H 0.05 2.54 6.76 -2.38 -0.02 2.53 16 9 C -0.57 -27.81 8.87 25.60 0.23 -27.59 16 10 H 0.07 3.49 7.82 -2.91 -0.02 3.47 16 11 C 0.04 2.13 5.23 84.65 0.44 2.58 16 12 N -0.88 -45.19 11.23 21.44 0.24 -44.95 16 13 Si 0.96 39.11 29.54 68.60 2.03 41.13 16 14 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 15 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 O -0.26 -12.85 8.00 -73.83 -0.59 -13.44 16 18 C 0.55 24.88 8.45 180.57 1.53 26.41 16 19 N -0.56 -22.71 8.66 -313.48 -2.71 -25.42 16 20 C 0.27 8.48 10.82 84.71 0.92 9.40 16 21 C -0.23 -7.01 6.89 36.55 0.25 -6.76 16 22 N 0.06 1.74 4.45 -46.07 -0.21 1.54 16 23 O -0.17 -4.88 18.54 18.90 0.35 -4.53 16 24 O -0.17 -5.07 18.54 18.88 0.35 -4.72 16 25 C 0.27 8.42 10.82 84.71 0.92 9.33 16 26 N -0.55 -22.37 10.46 -313.47 -3.28 -25.65 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.11 5.09 6.89 -2.39 -0.02 5.08 16 33 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 34 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 35 H 0.22 5.27 7.70 -2.91 -0.02 5.24 16 36 H 0.23 5.15 7.70 -2.91 -0.02 5.12 16 Total: -1.00 -62.11 332.43 3.43 -58.69 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.13 Total: 14.90 kcal Atomic # 6 Polarization: 32.88 SS G_CDS: 6.23 Total: 39.11 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -5.96 Total: -94.49 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -0.01 Total: -59.35 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -62.11 3.43 -58.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226731253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.433 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds