Wall clock time and date at job start Tue Mar 31 2020 10:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47053 * 2 1 4 4 C 1.34227 * 117.00022 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00006 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47157 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47191 * 54.48193 * 7 6 4 9 9 C 1.50705 * 109.47063 * 174.48334 * 7 6 4 10 10 H 1.07997 * 119.99777 * 95.00036 * 9 7 6 11 11 C 1.37876 * 120.00111 * 274.99794 * 9 7 6 12 12 N 1.31515 * 120.00239 * 185.02256 * 11 9 7 13 13 Si 1.86803 * 119.99629 * 5.02440 * 11 9 7 14 14 H 1.48505 * 109.47034 * 84.83305 * 13 11 9 15 15 H 1.48506 * 109.46664 * 204.82374 * 13 11 9 16 16 H 1.48495 * 109.47788 * 324.82419 * 13 11 9 17 17 O 1.42900 * 109.47221 * 294.48439 * 7 6 4 18 18 C 1.35513 * 116.99914 * 150.00150 * 17 7 6 19 19 N 1.32824 * 120.51344 * 359.71961 * 18 17 7 20 20 C 1.31766 * 120.71753 * 179.71447 * 19 18 17 21 21 N 1.31795 * 121.81331 * 0.57843 * 20 19 18 22 22 C 1.32490 * 120.96504 * 359.71476 * 21 20 19 23 23 C 1.38237 * 119.17293 * 359.97438 * 22 21 20 24 24 N 1.48010 * 120.82264 * 180.02562 * 23 22 21 25 25 O 1.21800 * 119.99759 * 359.97438 * 24 23 22 26 26 O 1.21799 * 119.99789 * 179.97438 * 24 23 22 27 27 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00233 * 1 2 3 29 29 H 1.09007 * 109.46763 * 60.00740 * 1 2 3 30 30 H 1.08999 * 109.47713 * 239.99516 * 2 1 3 31 31 H 1.09007 * 109.46763 * 119.99260 * 2 1 3 32 32 H 1.08994 * 109.47594 * 59.99460 * 6 4 3 33 33 H 1.09001 * 109.46974 * 299.99171 * 6 4 3 34 34 H 0.96996 * 119.99989 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.09682 * 180.27043 * 20 19 18 36 36 H 1.07998 * 120.41547 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7802 2.2418 -0.8372 9 6 6.0242 4.2434 -0.1383 10 1 6.3104 4.7989 0.7426 11 6 6.1855 4.8023 -1.3883 12 7 6.7779 5.9696 -1.5153 13 14 5.5623 3.9015 -2.9015 14 1 4.1233 4.2082 -3.1025 15 1 6.3332 4.3418 -4.0920 16 1 5.7352 2.4387 -2.7131 17 8 5.8950 2.2755 1.2254 18 6 7.0506 1.5687 1.1862 19 7 7.7187 1.4313 0.0465 20 6 8.8456 0.7497 0.0049 21 7 9.3478 0.1714 1.0775 22 6 8.7356 0.2594 2.2492 23 6 7.5535 0.9703 2.3401 24 7 6.8394 1.0925 3.6308 25 8 7.2921 0.5627 4.6297 26 8 5.7992 1.7229 3.6939 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5850 3.4700 0.8887 33 1 3.5845 3.4693 -0.8913 34 1 6.8917 6.3625 -2.3948 35 1 9.3697 0.6582 -0.9350 36 1 9.1552 -0.2176 3.1225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228657838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:00 Heat of formation + Delta-G solvation = -74.636401 kcal Electronic energy + Delta-G solvation = -26533.750117 eV Core-core repulsion = 22408.845998 eV Total energy + Delta-G solvation = -4124.904119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03925 -40.89003 -40.17814 -38.40282 -36.36403 -36.11901 -33.77628 -33.39390 -32.31902 -31.85052 -30.89316 -26.85521 -26.72482 -24.65265 -23.32160 -23.26986 -21.83732 -20.42933 -19.20847 -18.78125 -18.39419 -17.84373 -17.32350 -17.29251 -17.01502 -16.43048 -15.87753 -15.48922 -15.32466 -14.51445 -14.24134 -14.10605 -13.57341 -13.31222 -13.05147 -12.80451 -12.67878 -12.35950 -12.17336 -11.80674 -11.62242 -11.48590 -11.23075 -11.07812 -10.82776 -10.77723 -10.62562 -10.48073 -10.41879 -10.11838 -10.06278 -9.86840 -9.46742 -9.04771 -8.90333 -6.47681 -4.56395 -0.02974 1.05902 1.51422 1.63739 2.57511 2.89838 2.98576 3.04232 3.12265 3.14469 3.58167 3.87290 3.94093 4.05255 4.48435 4.59584 4.80857 4.90300 4.93208 5.07720 5.14582 5.24555 5.58838 5.71609 5.77906 5.80975 5.87474 5.90792 6.15394 6.48976 6.55527 6.67071 6.75083 7.03359 7.37223 7.84485 8.00247 8.03957 8.10478 8.59419 9.08615 10.63161 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.007202 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.527649 B = 3886.776016 C = 5783.104760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.361 6.361 4 C 0.458 3.542 5 O -0.514 6.514 6 C -0.113 4.113 7 C 0.185 3.815 8 H 0.077 0.923 9 C -0.543 4.543 10 H 0.088 0.912 11 C 0.094 3.906 12 N -0.872 5.872 13 Si 0.855 3.145 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.253 1.253 17 O -0.251 6.251 18 C 0.463 3.537 19 N -0.542 5.542 20 C 0.375 3.625 21 N -0.548 5.548 22 C 0.248 3.752 23 C -0.199 4.199 24 N 0.052 4.948 25 O -0.189 6.189 26 O -0.130 6.130 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.273 0.727 35 H 0.214 0.786 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -10.920 1.203 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.279 6.279 4 C 0.302 3.698 5 O -0.401 6.401 6 C -0.151 4.151 7 C 0.131 3.869 8 H 0.095 0.905 9 C -0.580 4.580 10 H 0.106 0.894 11 C -0.112 4.112 12 N -0.506 5.506 13 Si 0.681 3.319 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.178 1.178 17 O -0.149 6.149 18 C 0.275 3.725 19 N -0.273 5.273 20 C 0.089 3.911 21 N -0.270 5.270 22 C 0.081 3.919 23 C -0.291 4.291 24 N 0.569 4.431 25 O -0.395 6.395 26 O -0.352 6.352 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.010 -11.087 -0.179 11.489 hybrid contribution -0.870 -0.253 -0.082 0.909 sum -3.879 -11.340 -0.261 11.988 Atomic orbital electron populations 1.21789 0.92879 1.02608 1.03509 1.22947 0.95189 0.81146 1.02269 1.86559 1.25357 1.31645 1.84338 1.24556 0.80018 0.93760 0.71444 1.90598 1.60412 1.43464 1.45668 1.22285 0.96587 0.89430 1.06773 1.20777 0.88454 0.95675 0.82022 0.90547 1.21013 1.43893 0.97612 0.95462 0.89422 1.24824 0.93316 0.94697 0.98403 1.69854 1.39297 1.16694 1.24793 0.87203 0.79887 0.81629 0.83199 1.19204 1.20217 1.17769 1.86400 1.30724 1.58172 1.39616 1.19640 0.85390 0.81114 0.86394 1.68697 1.11007 1.22061 1.25489 1.25320 0.86294 0.82121 0.97402 1.68806 1.34337 1.25094 0.98736 1.23100 0.85479 0.86152 0.97197 1.22234 1.02907 1.18482 0.85458 1.42935 1.00363 0.98456 1.01366 1.94475 1.70769 1.49118 1.25156 1.94629 1.10210 1.38528 1.91832 0.90590 0.91407 0.91566 0.91670 0.91477 0.86336 0.86472 0.91713 0.77020 0.79001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -6.00 10.22 -39.25 -0.40 -6.40 16 4 C 0.46 8.82 7.84 36.01 0.28 9.11 16 5 O -0.51 -10.98 15.18 -23.92 -0.36 -11.34 16 6 C -0.11 -2.23 5.26 -27.88 -0.15 -2.38 16 7 C 0.19 4.22 1.00 -27.88 -0.03 4.19 16 8 H 0.08 1.82 4.40 -51.93 -0.23 1.59 16 9 C -0.54 -14.01 9.21 -34.44 -0.32 -14.33 16 10 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 11 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 12 N -0.87 -24.18 13.96 55.43 0.77 -23.41 16 13 Si 0.86 19.07 25.89 -169.99 -4.40 14.66 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.25 -5.59 6.14 56.52 0.35 -5.24 16 17 O -0.25 -5.69 7.21 -46.41 -0.33 -6.02 16 18 C 0.46 9.62 7.47 -16.70 -0.12 9.50 16 19 N -0.54 -10.59 8.81 -14.64 -0.13 -10.72 16 20 C 0.37 5.65 12.28 -92.18 -1.13 4.52 16 21 N -0.55 -7.89 10.43 -14.65 -0.15 -8.04 16 22 C 0.25 3.62 10.81 -17.27 -0.19 3.43 16 23 C -0.20 -3.63 6.91 -79.53 -0.55 -4.18 16 24 N 0.05 0.99 4.45 34.17 0.15 1.14 16 25 O -0.19 -3.34 18.55 -29.46 -0.55 -3.89 16 26 O -0.13 -2.72 17.40 -36.29 -0.63 -3.35 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 33 H 0.12 2.21 6.40 -51.93 -0.33 1.88 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.21 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.19 2.11 7.70 -52.49 -0.40 1.70 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -31.15 326.96 -6.33 -37.48 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.54 Total: 2.81 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -1.69 Total: 12.15 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.64 Total: -41.03 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -2.28 Total: -31.00 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.40 Total: 14.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.15 -6.33 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228657838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.158 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds