Wall clock time and date at job start Tue Mar 31 2020 10:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47053 * 2 1 4 4 C 1.34227 * 117.00022 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00006 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47157 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47191 * 54.48193 * 7 6 4 9 9 C 1.50705 * 109.47063 * 174.48334 * 7 6 4 10 10 H 1.07997 * 119.99777 * 95.00036 * 9 7 6 11 11 C 1.37876 * 120.00111 * 274.99794 * 9 7 6 12 12 N 1.31515 * 120.00239 * 185.02256 * 11 9 7 13 13 Si 1.86803 * 119.99629 * 5.02440 * 11 9 7 14 14 H 1.48505 * 109.47034 * 84.83305 * 13 11 9 15 15 H 1.48506 * 109.46664 * 204.82374 * 13 11 9 16 16 H 1.48495 * 109.47788 * 324.82419 * 13 11 9 17 17 O 1.42900 * 109.47221 * 294.48439 * 7 6 4 18 18 C 1.35513 * 116.99914 * 150.00150 * 17 7 6 19 19 N 1.32824 * 120.51344 * 359.71961 * 18 17 7 20 20 C 1.31766 * 120.71753 * 179.71447 * 19 18 17 21 21 N 1.31795 * 121.81331 * 0.57843 * 20 19 18 22 22 C 1.32490 * 120.96504 * 359.71476 * 21 20 19 23 23 C 1.38237 * 119.17293 * 359.97438 * 22 21 20 24 24 N 1.48010 * 120.82264 * 180.02562 * 23 22 21 25 25 O 1.21800 * 119.99759 * 359.97438 * 24 23 22 26 26 O 1.21799 * 119.99789 * 179.97438 * 24 23 22 27 27 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00233 * 1 2 3 29 29 H 1.09007 * 109.46763 * 60.00740 * 1 2 3 30 30 H 1.08999 * 109.47713 * 239.99516 * 2 1 3 31 31 H 1.09007 * 109.46763 * 119.99260 * 2 1 3 32 32 H 1.08994 * 109.47594 * 59.99460 * 6 4 3 33 33 H 1.09001 * 109.46974 * 299.99171 * 6 4 3 34 34 H 0.96996 * 119.99989 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.09682 * 180.27043 * 20 19 18 36 36 H 1.07998 * 120.41547 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7802 2.2418 -0.8372 9 6 6.0242 4.2434 -0.1383 10 1 6.3104 4.7989 0.7426 11 6 6.1855 4.8023 -1.3883 12 7 6.7779 5.9696 -1.5153 13 14 5.5623 3.9015 -2.9015 14 1 4.1233 4.2082 -3.1025 15 1 6.3332 4.3418 -4.0920 16 1 5.7352 2.4387 -2.7131 17 8 5.8950 2.2755 1.2254 18 6 7.0506 1.5687 1.1862 19 7 7.7187 1.4313 0.0465 20 6 8.8456 0.7497 0.0049 21 7 9.3478 0.1714 1.0775 22 6 8.7356 0.2594 2.2492 23 6 7.5535 0.9703 2.3401 24 7 6.8394 1.0925 3.6308 25 8 7.2921 0.5627 4.6297 26 8 5.7992 1.7229 3.6939 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5850 3.4700 0.8887 33 1 3.5845 3.4693 -0.8913 34 1 6.8917 6.3625 -2.3948 35 1 9.3697 0.6582 -0.9350 36 1 9.1552 -0.2176 3.1225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228657838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:59 Heat of formation + Delta-G solvation = -94.373620 kcal Electronic energy + Delta-G solvation = -26534.605987 eV Core-core repulsion = 22408.845998 eV Total energy + Delta-G solvation = -4125.759989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.48633 -42.31644 -41.63313 -39.94132 -37.78696 -37.60116 -35.53522 -34.79809 -33.93806 -33.06138 -32.29706 -28.55014 -28.18620 -26.14641 -24.67721 -24.50711 -23.30529 -21.91271 -20.68683 -20.24898 -19.90595 -19.61247 -18.78256 -18.73420 -18.61301 -17.76747 -17.35042 -16.90282 -16.79490 -16.19771 -15.62850 -15.35831 -14.96216 -14.83215 -14.59729 -14.32303 -13.86062 -13.66614 -13.53368 -13.31232 -12.96273 -12.78446 -12.73142 -12.54944 -12.44688 -12.28461 -12.08946 -11.96861 -11.90834 -11.69672 -11.59014 -11.53153 -10.97131 -10.83940 -10.58855 -8.48562 -6.62810 -1.39116 -0.30770 0.09328 0.20941 1.05953 1.24135 1.30708 1.38087 1.49360 1.62544 2.18296 2.26058 2.54780 2.77289 2.85819 3.08274 3.26226 3.66103 3.94229 4.02270 4.06120 4.08163 4.22835 4.28211 4.41661 4.70280 4.78338 4.87213 4.88865 5.06792 5.08822 5.15956 5.34974 5.37812 5.67377 6.10086 6.46132 6.49189 6.56896 6.63257 7.06536 8.66583 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.007202 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.527649 B = 3886.776016 C = 5783.104760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.359 6.359 4 C 0.466 3.534 5 O -0.538 6.538 6 C -0.115 4.115 7 C 0.195 3.805 8 H 0.069 0.931 9 C -0.545 4.545 10 H 0.039 0.961 11 C 0.051 3.949 12 N -0.919 5.919 13 Si 0.913 3.087 14 H -0.243 1.243 15 H -0.272 1.272 16 H -0.250 1.250 17 O -0.271 6.271 18 C 0.437 3.563 19 N -0.576 5.576 20 C 0.381 3.619 21 N -0.533 5.533 22 C 0.268 3.732 23 C -0.214 4.214 24 N 0.052 4.948 25 O -0.132 6.132 26 O -0.205 6.205 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.277 0.723 35 H 0.256 0.744 36 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -13.458 0.532 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.428 6.428 6 C -0.152 4.152 7 C 0.140 3.860 8 H 0.087 0.913 9 C -0.582 4.582 10 H 0.058 0.942 11 C -0.152 4.152 12 N -0.555 5.555 13 Si 0.735 3.265 14 H -0.167 1.167 15 H -0.197 1.197 16 H -0.174 1.174 17 O -0.170 6.170 18 C 0.249 3.751 19 N -0.308 5.308 20 C 0.097 3.903 21 N -0.253 5.253 22 C 0.100 3.900 23 C -0.306 4.306 24 N 0.567 4.433 25 O -0.356 6.356 26 O -0.408 6.408 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.271 0.729 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.123 -13.539 -0.913 13.925 hybrid contribution -0.662 0.360 0.295 0.809 sum -3.785 -13.179 -0.619 13.726 Atomic orbital electron populations 1.21824 0.89720 1.04557 1.03895 1.23351 0.97615 0.79271 1.02278 1.86536 1.23495 1.33917 1.83645 1.24191 0.80853 0.92925 0.70998 1.90583 1.61207 1.44021 1.46944 1.22112 0.94924 0.90504 1.07678 1.20500 0.89882 0.93356 0.82261 0.91327 1.20990 1.44293 0.98909 0.94019 0.94248 1.25547 0.93162 0.95214 1.01265 1.69978 1.41182 1.18586 1.25801 0.86290 0.80663 0.80374 0.79201 1.16701 1.19724 1.17404 1.86370 1.32214 1.59186 1.39205 1.20017 0.85329 0.81848 0.87946 1.68698 1.12752 1.23851 1.25452 1.26219 0.84839 0.80113 0.99143 1.68983 1.33446 1.24330 0.98545 1.23848 0.83490 0.84155 0.98483 1.22478 1.04072 1.19744 0.84333 1.43064 1.00229 0.98157 1.01803 1.94412 1.69525 1.46440 1.25232 1.94663 1.11981 1.41766 1.92345 0.87812 0.91199 0.90995 0.91369 0.91883 0.85656 0.85405 0.91391 0.72877 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.36 -11.60 10.22 -51.39 -0.53 -12.13 16 4 C 0.47 17.90 7.84 71.24 0.56 18.46 16 5 O -0.54 -23.08 15.18 26.92 0.41 -22.67 16 6 C -0.11 -4.60 5.26 29.85 0.16 -4.45 16 7 C 0.19 9.13 1.00 29.85 0.03 9.16 16 8 H 0.07 3.31 4.40 -2.39 -0.01 3.30 16 9 C -0.55 -29.48 9.21 25.60 0.24 -29.24 16 10 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 11 C 0.05 2.71 5.47 84.65 0.46 3.17 16 12 N -0.92 -52.64 13.96 21.45 0.30 -52.34 16 13 Si 0.91 39.19 25.89 68.60 1.78 40.97 16 14 H -0.24 -9.48 7.11 99.48 0.71 -8.77 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.25 -10.54 6.14 99.48 0.61 -9.93 16 17 O -0.27 -12.80 7.21 -61.21 -0.44 -13.24 16 18 C 0.44 18.44 7.47 84.82 0.63 19.07 16 19 N -0.58 -22.34 8.81 -312.89 -2.76 -25.10 16 20 C 0.38 10.66 12.28 180.89 2.22 12.89 16 21 N -0.53 -13.68 10.43 -200.25 -2.09 -15.77 16 22 C 0.27 7.03 10.81 84.59 0.91 7.94 16 23 C -0.21 -7.69 6.91 36.65 0.25 -7.43 16 24 N 0.05 2.00 4.45 -45.81 -0.20 1.79 16 25 O -0.13 -4.39 18.55 18.89 0.35 -4.04 16 26 O -0.20 -8.97 17.40 25.42 0.44 -8.53 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 33 H 0.13 4.77 6.40 -2.39 -0.02 4.76 16 34 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.26 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.24 4.02 7.70 -2.91 -0.02 3.99 16 Total: -1.00 -71.45 326.96 4.96 -66.50 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.04 Total: 14.97 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 6.65 Total: 29.57 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -4.75 Total: -91.41 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: 0.23 Total: -60.60 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.78 Total: 40.97 kcal Total: -71.45 4.96 -66.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228657838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.878 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds