Wall clock time and date at job start Tue Mar 31 2020 09:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47090 * 299.99979 * 3 2 1 6 6 H 1.48498 * 109.47488 * 60.00340 * 3 2 1 7 7 C 1.40094 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00219 * 167.90193 * 7 2 1 9 9 C 1.40828 * 119.99810 * 347.90259 * 7 2 1 10 10 C 1.40371 * 120.40962 * 329.48837 * 9 7 2 11 11 C 1.40023 * 117.97156 * 179.97438 * 10 9 7 12 12 C 1.40787 * 121.40600 * 179.97438 * 11 10 9 13 13 C 1.36126 * 119.46739 * 180.02562 * 12 11 10 14 14 C 1.39161 * 121.47320 * 0.02562 * 13 12 11 15 15 C 1.36250 * 121.74835 * 359.95419 * 14 13 12 16 16 C 1.40479 * 119.70461 * 0.04024 * 15 14 13 17 17 N 1.33664 * 120.97038 * 180.21216 * 16 15 14 18 18 C 1.31624 * 121.73846 * 180.28458 * 17 16 15 19 19 C 1.47791 * 119.45001 * 179.75877 * 18 17 16 20 20 C 1.39838 * 120.17967 * 303.24900 * 19 18 17 21 21 F 1.35105 * 120.09018 * 0.02562 * 20 19 18 22 22 C 1.38204 * 119.81779 * 179.97438 * 20 19 18 23 23 C 1.38332 * 120.17822 * 359.97438 * 22 20 19 24 24 C 1.38327 * 120.36125 * 0.28009 * 23 22 20 25 25 C 1.38206 * 120.17929 * 359.48954 * 24 23 22 26 26 F 1.35097 * 120.08900 * 180.25108 * 25 24 23 27 27 H 0.96998 * 120.00312 * 359.97438 * 1 2 3 28 28 H 1.08000 * 121.01230 * 359.95929 * 10 9 7 29 29 H 1.08000 * 120.26652 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.26598 * 179.97438 * 13 12 11 31 31 H 1.07997 * 119.12885 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14934 * 180.02562 * 15 14 13 33 33 H 1.08000 * 119.90828 * 180.02562 * 22 20 19 34 34 H 1.07999 * 119.81552 * 179.97438 * 23 22 20 35 35 H 1.08006 * 119.90917 * 179.71793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8830 2.3964 1.2125 7 6 2.0081 -1.2132 -0.0005 8 1 3.0702 -1.2235 -0.1966 9 6 1.3275 -2.4194 0.2545 10 6 0.2024 -2.4366 1.0937 11 6 -0.4357 -3.6638 1.3117 12 6 -1.5693 -3.7643 2.1404 13 6 -2.1583 -4.9775 2.3253 14 6 -1.6648 -6.1256 1.7129 15 6 -0.5718 -6.0913 0.9002 16 6 0.0840 -4.8711 0.6667 17 7 1.1559 -4.8076 -0.1294 18 6 1.7851 -3.6736 -0.3543 19 6 2.9686 -3.6625 -1.2394 20 6 4.0649 -4.4836 -0.9576 21 9 4.0458 -5.2911 0.1254 22 6 5.1676 -4.4676 -1.7907 23 6 5.1884 -3.6427 -2.9009 24 6 4.1102 -2.8235 -3.1837 25 6 2.9979 -2.8311 -2.3634 26 9 1.9439 -2.0341 -2.6441 27 1 -0.4850 0.8400 0.0004 28 1 -0.1599 -1.5309 1.5573 29 1 -1.9680 -2.8860 2.6263 30 1 -3.0276 -5.0509 2.9620 31 1 -2.1615 -7.0688 1.8863 32 1 -0.2110 -6.9981 0.4378 33 1 6.0149 -5.1015 -1.5747 34 1 6.0533 -3.6345 -3.5477 35 1 4.1361 -2.1790 -4.0499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239573181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:04 Heat of formation + Delta-G solvation = -23.509006 kcal Electronic energy + Delta-G solvation = -24938.804537 eV Core-core repulsion = 21115.879216 eV Total energy + Delta-G solvation = -3822.925322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.40307 -48.18819 -39.08802 -38.14468 -35.96504 -34.21131 -31.74738 -31.43177 -29.93217 -29.33861 -28.30835 -25.66974 -23.83097 -22.40289 -21.80106 -21.24726 -20.53646 -18.13592 -17.62827 -16.75809 -16.56497 -16.22164 -15.69585 -15.25082 -15.03995 -14.91481 -14.58232 -14.54611 -13.80970 -13.56015 -13.47580 -12.98070 -12.94865 -12.62373 -12.27863 -11.97236 -11.80298 -11.59379 -11.45623 -11.43041 -11.16663 -11.09966 -10.82984 -10.60269 -10.46527 -9.96534 -9.60617 -9.03342 -8.67422 -8.34204 -8.25229 -7.39863 -7.20052 -7.01526 -4.60966 1.15442 1.40836 1.69573 2.02565 2.85354 2.92969 2.98121 3.37444 3.68289 3.73664 3.90541 4.36394 4.63502 4.85915 4.92104 5.03303 5.15282 5.42191 5.49627 5.61507 5.65997 5.77473 6.07927 6.13938 6.17558 6.25953 6.26862 6.40530 6.46101 6.50334 6.61025 6.78416 6.83159 6.96630 7.17313 7.22371 7.32806 7.36318 7.63791 7.69949 7.85557 8.21376 8.42375 8.48259 9.13852 9.87849 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.007588 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.382840 B = 3689.171127 C = 5797.926647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.086 3.914 10 C -0.164 4.164 11 C -0.044 4.044 12 C -0.129 4.129 13 C -0.116 4.116 14 C -0.178 4.178 15 C -0.056 4.056 16 C 0.025 3.975 17 N -0.445 5.445 18 C 0.102 3.898 19 C -0.067 4.067 20 C 0.143 3.857 21 F -0.126 7.126 22 C -0.178 4.178 23 C -0.072 4.072 24 C -0.178 4.178 25 C 0.161 3.839 26 F -0.110 7.110 27 H 0.287 0.713 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -2.220 -2.882 6.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.450 4.450 8 H 0.102 0.898 9 C 0.081 3.919 10 C -0.189 4.189 11 C -0.046 4.046 12 C -0.148 4.148 13 C -0.134 4.134 14 C -0.198 4.198 15 C -0.075 4.075 16 C -0.098 4.098 17 N -0.151 5.151 18 C -0.053 4.053 19 C -0.070 4.070 20 C 0.122 3.878 21 F -0.104 7.104 22 C -0.197 4.197 23 C -0.091 4.091 24 C -0.198 4.198 25 C 0.141 3.859 26 F -0.088 7.088 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.437 -2.889 -3.195 6.936 hybrid contribution -0.303 1.555 0.528 1.670 sum 5.134 -1.334 -2.667 5.937 Atomic orbital electron populations 1.69749 1.07703 1.30003 1.31918 1.25969 0.94879 1.01580 0.92140 0.86172 0.81058 0.80271 0.79013 1.17958 1.19421 1.19318 1.19530 0.96351 0.90150 1.39015 0.89834 1.19108 0.92363 0.91133 0.89312 1.21463 0.99912 0.95371 1.02179 1.19709 0.94848 0.94033 0.96056 1.20859 0.96431 0.97091 1.00400 1.20486 0.99595 0.93063 1.00248 1.20268 0.99243 0.97715 1.02610 1.20502 0.94500 0.95672 0.96836 1.19264 0.96026 0.92822 1.01705 1.67376 1.06711 1.27484 1.13564 1.20573 0.95694 0.90279 0.98737 1.18524 0.94434 0.98198 0.95813 1.17495 0.93986 0.90975 0.85330 1.91514 1.96613 1.70294 1.52019 1.20976 0.98262 1.03707 0.96762 1.20699 0.97738 0.94493 0.96122 1.21050 0.93458 1.03483 1.01763 1.17461 0.85155 0.90160 0.93172 1.91608 1.54460 1.70281 1.92457 0.90169 0.85056 0.87007 0.87766 0.87611 0.86874 0.84653 0.84643 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.62 11.06 55.56 0.61 -18.01 16 2 C 0.08 1.76 5.23 -17.31 -0.09 1.67 16 3 Si 0.91 17.45 29.58 -169.99 -5.03 12.42 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.42 -10.38 6.60 -37.91 -0.25 -10.63 16 8 H 0.08 2.00 7.12 -52.48 -0.37 1.62 16 9 C 0.09 2.22 5.44 -104.68 -0.57 1.65 16 10 C -0.16 -4.20 8.50 -38.11 -0.32 -4.52 16 11 C -0.04 -1.07 5.87 -104.98 -0.62 -1.69 16 12 C -0.13 -2.71 9.80 -39.38 -0.39 -3.10 16 13 C -0.12 -2.16 9.91 -40.00 -0.40 -2.55 16 14 C -0.18 -3.31 9.90 -39.95 -0.40 -3.71 16 15 C -0.06 -1.18 9.98 -39.45 -0.39 -1.58 16 16 C 0.03 0.62 6.74 -82.94 -0.56 0.06 16 17 N -0.45 -11.19 10.03 -4.85 -0.05 -11.24 16 18 C 0.10 2.53 5.88 -80.62 -0.47 2.06 16 19 C -0.07 -1.44 4.89 -104.80 -0.51 -1.95 16 20 C 0.14 2.70 7.27 -39.00 -0.28 2.42 16 21 F -0.13 -2.57 16.68 2.25 0.04 -2.53 16 22 C -0.18 -2.58 10.01 -39.56 -0.40 -2.97 16 23 C -0.07 -0.92 10.03 -39.51 -0.40 -1.32 16 24 C -0.18 -2.67 10.01 -39.56 -0.40 -3.06 16 25 C 0.16 3.16 6.28 -39.00 -0.24 2.92 16 26 F -0.11 -2.43 15.21 2.25 0.03 -2.40 16 27 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 28 H 0.13 3.37 6.48 -52.49 -0.34 3.03 16 29 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -28.39 314.50 -9.14 -37.53 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -2.81 Total: 5.78 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -6.68 Total: -26.30 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.57 Total: -29.24 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.07 Total: -4.93 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.39 -9.14 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239573181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.019 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds