Wall clock time and date at job start Tue Mar 31 2020 09:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47090 * 299.99979 * 3 2 1 6 6 H 1.48498 * 109.47488 * 60.00340 * 3 2 1 7 7 C 1.40094 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00219 * 167.90193 * 7 2 1 9 9 C 1.40828 * 119.99810 * 347.90259 * 7 2 1 10 10 C 1.40371 * 120.40962 * 329.48837 * 9 7 2 11 11 C 1.40023 * 117.97156 * 179.97438 * 10 9 7 12 12 C 1.40787 * 121.40600 * 179.97438 * 11 10 9 13 13 C 1.36126 * 119.46739 * 180.02562 * 12 11 10 14 14 C 1.39161 * 121.47320 * 0.02562 * 13 12 11 15 15 C 1.36250 * 121.74835 * 359.95419 * 14 13 12 16 16 C 1.40479 * 119.70461 * 0.04024 * 15 14 13 17 17 N 1.33664 * 120.97038 * 180.21216 * 16 15 14 18 18 C 1.31624 * 121.73846 * 180.28458 * 17 16 15 19 19 C 1.47791 * 119.45001 * 179.75877 * 18 17 16 20 20 C 1.39838 * 120.17967 * 303.24900 * 19 18 17 21 21 F 1.35105 * 120.09018 * 0.02562 * 20 19 18 22 22 C 1.38204 * 119.81779 * 179.97438 * 20 19 18 23 23 C 1.38332 * 120.17822 * 359.97438 * 22 20 19 24 24 C 1.38327 * 120.36125 * 0.28009 * 23 22 20 25 25 C 1.38206 * 120.17929 * 359.48954 * 24 23 22 26 26 F 1.35097 * 120.08900 * 180.25108 * 25 24 23 27 27 H 0.96998 * 120.00312 * 359.97438 * 1 2 3 28 28 H 1.08000 * 121.01230 * 359.95929 * 10 9 7 29 29 H 1.08000 * 120.26652 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.26598 * 179.97438 * 13 12 11 31 31 H 1.07997 * 119.12885 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14934 * 180.02562 * 15 14 13 33 33 H 1.08000 * 119.90828 * 180.02562 * 22 20 19 34 34 H 1.07999 * 119.81552 * 179.97438 * 23 22 20 35 35 H 1.08006 * 119.90917 * 179.71793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8830 2.3964 1.2125 7 6 2.0081 -1.2132 -0.0005 8 1 3.0702 -1.2235 -0.1966 9 6 1.3275 -2.4194 0.2545 10 6 0.2024 -2.4366 1.0937 11 6 -0.4357 -3.6638 1.3117 12 6 -1.5693 -3.7643 2.1404 13 6 -2.1583 -4.9775 2.3253 14 6 -1.6648 -6.1256 1.7129 15 6 -0.5718 -6.0913 0.9002 16 6 0.0840 -4.8711 0.6667 17 7 1.1559 -4.8076 -0.1294 18 6 1.7851 -3.6736 -0.3543 19 6 2.9686 -3.6625 -1.2394 20 6 4.0649 -4.4836 -0.9576 21 9 4.0458 -5.2911 0.1254 22 6 5.1676 -4.4676 -1.7907 23 6 5.1884 -3.6427 -2.9009 24 6 4.1102 -2.8235 -3.1837 25 6 2.9979 -2.8311 -2.3634 26 9 1.9439 -2.0341 -2.6441 27 1 -0.4850 0.8400 0.0004 28 1 -0.1599 -1.5309 1.5573 29 1 -1.9680 -2.8860 2.6263 30 1 -3.0276 -5.0509 2.9620 31 1 -2.1615 -7.0688 1.8863 32 1 -0.2110 -6.9981 0.4378 33 1 6.0149 -5.1015 -1.5747 34 1 6.0533 -3.6345 -3.5477 35 1 4.1361 -2.1790 -4.0499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239573181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:03 Heat of formation + Delta-G solvation = -37.676433 kcal Electronic energy + Delta-G solvation = -24939.418883 eV Core-core repulsion = 21115.879216 eV Total energy + Delta-G solvation = -3823.539667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.88083 -49.73129 -40.78174 -39.49113 -37.60393 -35.97875 -33.49714 -32.90598 -31.24756 -31.01537 -29.88665 -27.43882 -25.33783 -23.90461 -23.37218 -22.75969 -22.25950 -19.84324 -19.07091 -18.34311 -18.09717 -17.79912 -17.28901 -16.74188 -16.47887 -16.46969 -16.12220 -15.99723 -15.27360 -15.12148 -15.07061 -14.73359 -14.54054 -14.26263 -13.70590 -13.57099 -13.50113 -12.99527 -12.97490 -12.80487 -12.75123 -12.54605 -12.35481 -12.19621 -12.03149 -11.66075 -11.34211 -10.79796 -10.29657 -9.87935 -9.63400 -9.14409 -8.91086 -8.74993 -6.45155 -0.36906 0.10504 0.14578 0.35944 1.30360 1.33950 1.49012 1.60332 2.10061 2.15186 2.52179 2.89133 3.03857 3.34938 3.56776 3.59296 3.90444 3.95147 3.98469 4.20511 4.26523 4.30247 4.52239 4.56506 4.59983 4.74038 4.95423 5.02863 5.07838 5.11573 5.14124 5.21706 5.26048 5.30512 5.50549 5.62839 5.71090 5.82351 5.89119 5.92759 6.17702 6.40086 6.61527 6.66708 7.31814 8.17189 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.007588 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.382840 B = 3689.171127 C = 5797.926647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.438 4.438 8 H 0.080 0.920 9 C 0.057 3.943 10 C -0.195 4.195 11 C -0.068 4.068 12 C -0.150 4.150 13 C -0.100 4.100 14 C -0.159 4.159 15 C -0.076 4.076 16 C -0.007 4.007 17 N -0.465 5.465 18 C 0.090 3.910 19 C -0.107 4.107 20 C 0.115 3.885 21 F -0.144 7.144 22 C -0.159 4.159 23 C -0.045 4.045 24 C -0.163 4.163 25 C 0.128 3.872 26 F -0.137 7.137 27 H 0.294 0.706 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.196 0.804 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -2.936 -3.795 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.098 0.902 9 C 0.052 3.948 10 C -0.221 4.221 11 C -0.070 4.070 12 C -0.169 4.169 13 C -0.118 4.118 14 C -0.178 4.178 15 C -0.095 4.095 16 C -0.129 4.129 17 N -0.172 5.172 18 C -0.065 4.065 19 C -0.110 4.110 20 C 0.095 3.905 21 F -0.123 7.123 22 C -0.177 4.177 23 C -0.063 4.063 24 C -0.182 4.182 25 C 0.108 3.892 26 F -0.116 7.116 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.145 0.855 33 H 0.192 0.808 34 H 0.213 0.787 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.959 -3.629 -4.102 8.856 hybrid contribution -0.812 1.585 0.794 1.950 sum 6.148 -2.045 -3.308 7.275 Atomic orbital electron populations 1.69814 1.09195 1.31205 1.32741 1.26841 0.95558 1.04570 0.91120 0.85164 0.79743 0.75737 0.79369 1.17428 1.18546 1.18532 1.19595 0.96165 0.90690 1.40165 0.90169 1.19492 0.93049 0.92398 0.89901 1.21435 1.01330 0.95616 1.03680 1.20043 0.96161 0.93743 0.97060 1.21083 0.96042 0.99040 1.00694 1.21004 0.99879 0.91731 0.99152 1.20817 0.97545 0.99614 0.99871 1.20791 0.95585 0.94916 0.98186 1.19888 0.96573 0.94259 1.02213 1.67455 1.07424 1.27881 1.14430 1.21114 0.96725 0.89833 0.98870 1.18679 0.94502 1.00900 0.96870 1.17921 0.95154 0.91319 0.86146 1.91457 1.96786 1.70860 1.53203 1.21476 0.97255 1.03380 0.95594 1.21393 0.98206 0.91427 0.95248 1.21518 0.91915 1.03447 1.01315 1.17932 0.86278 0.90704 0.94337 1.91529 1.56123 1.71202 1.92713 0.89494 0.86454 0.85964 0.83194 0.83016 0.85484 0.80833 0.78704 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.34 11.06 21.85 0.24 -41.10 16 2 C 0.04 1.80 5.23 85.30 0.45 2.24 16 3 Si 0.98 36.66 29.58 68.60 2.03 38.69 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.44 -23.00 6.60 23.35 0.15 -22.85 16 8 H 0.08 4.09 7.12 -2.91 -0.02 4.07 16 9 C 0.06 3.16 5.44 -19.90 -0.11 3.05 16 10 C -0.19 -10.85 8.50 23.22 0.20 -10.65 16 11 C -0.07 -3.51 5.87 -20.09 -0.12 -3.63 16 12 C -0.15 -6.40 9.80 22.40 0.22 -6.18 16 13 C -0.10 -3.50 9.91 22.00 0.22 -3.28 16 14 C -0.16 -5.50 9.90 22.03 0.22 -5.28 16 15 C -0.08 -3.21 9.98 22.35 0.22 -2.98 16 16 C -0.01 -0.34 6.74 41.54 0.28 -0.06 16 17 N -0.47 -24.96 10.03 -169.25 -1.70 -26.65 16 18 C 0.09 4.80 5.88 43.93 0.26 5.06 16 19 C -0.11 -4.81 4.89 -19.98 -0.10 -4.91 16 20 C 0.11 4.40 7.27 22.65 0.16 4.57 16 21 F -0.14 -6.11 16.68 44.97 0.75 -5.36 16 22 C -0.16 -4.09 10.01 22.28 0.22 -3.87 16 23 C -0.05 -0.93 10.03 22.31 0.22 -0.71 16 24 C -0.16 -4.46 10.01 22.28 0.22 -4.23 16 25 C 0.13 5.14 6.28 22.65 0.14 5.29 16 26 F -0.14 -6.43 15.21 44.97 0.68 -5.74 16 27 H 0.29 13.50 8.29 -92.71 -0.77 12.73 16 28 H 0.12 6.61 6.48 -2.91 -0.02 6.60 16 29 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -71.05 314.50 6.02 -65.02 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.15 Total: 23.58 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 2.87 Total: -48.44 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.46 Total: -67.75 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 1.43 Total: -11.11 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -71.05 6.02 -65.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239573181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.348 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds