Wall clock time and date at job start Tue Mar 31 2020 10:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38367 * 119.86125 * 2 1 4 4 C 1.37970 * 120.15845 * 179.72140 * 3 2 1 5 5 C 1.39444 * 119.88032 * 0.57881 * 4 3 2 6 6 C 1.48181 * 120.13964 * 179.72356 * 5 4 3 7 7 C 1.39166 * 120.28415 * 64.74247 * 6 5 4 8 8 C 1.38321 * 120.10520 * 179.97438 * 7 6 5 9 9 C 1.38037 * 120.77535 * 0.04832 * 8 7 6 10 10 C 1.39123 * 120.23799 * 359.95356 * 9 8 7 11 11 N 1.38182 * 132.74314 * 179.97438 * 10 9 8 12 12 H 0.96999 * 124.70350 * 0.02562 * 11 10 9 13 13 C 1.35590 * 110.59544 * 180.02562 * 11 10 9 14 14 C 1.38995 * 109.24963 * 0.02562 * 13 11 10 15 15 C 1.40953 * 126.93221 * 179.73745 * 14 13 11 16 16 H 1.08003 * 120.00314 * 180.02562 * 15 14 13 17 17 C 1.39688 * 119.99910 * 0.02601 * 15 14 13 18 18 N 1.31076 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99835 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47274 * 90.00412 * 19 17 15 21 21 H 1.48497 * 109.47021 * 209.99834 * 19 17 15 22 22 H 1.48490 * 109.47393 * 329.99937 * 19 17 15 23 23 C 1.40203 * 120.27993 * 244.72723 * 6 5 4 24 24 C 1.39525 * 119.72285 * 359.44831 * 5 4 3 25 25 Cl 1.73606 * 120.07832 * 180.27080 * 24 5 4 26 26 C 1.38137 * 119.84452 * 0.25128 * 24 5 4 27 27 H 1.08998 * 109.47019 * 269.97011 * 1 2 3 28 28 H 1.08991 * 109.47282 * 29.97136 * 1 2 3 29 29 H 1.09001 * 109.47055 * 149.97741 * 1 2 3 30 30 H 1.08005 * 119.91948 * 0.02905 * 3 2 1 31 31 H 1.08002 * 120.06173 * 180.30430 * 4 3 2 32 32 H 1.08004 * 119.94616 * 359.97438 * 7 6 5 33 33 H 1.08008 * 119.61507 * 180.02562 * 8 7 6 34 34 H 1.08005 * 119.88176 * 179.97438 * 9 8 7 35 35 H 1.07995 * 125.37955 * 179.97438 * 13 11 10 36 36 H 0.97003 * 120.00067 * 180.02562 * 18 17 15 37 37 H 1.07999 * 119.94541 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5756 1.2071 0.0058 5 6 4.2766 0.0017 -0.0005 6 6 5.7584 0.0027 -0.0005 7 6 6.4599 0.5103 1.0890 8 6 7.8431 0.5089 1.0853 9 6 8.5460 0.0085 0.0079 10 6 7.8683 -0.5045 -1.0936 11 7 8.2978 -1.0576 -2.2848 12 1 9.2274 -1.1736 -2.5364 13 6 7.2397 -1.4158 -3.0533 14 6 6.0615 -1.1054 -2.3842 15 6 4.7458 -1.3147 -2.8445 16 1 3.9062 -1.0288 -2.2282 17 6 4.5278 -1.8919 -4.0977 18 7 5.5468 -2.2393 -4.8455 19 14 2.7841 -2.1686 -4.7080 20 1 2.3254 -0.9705 -5.4560 21 1 2.7553 -3.3524 -5.6040 22 1 1.8854 -2.4029 -3.5493 23 6 6.4657 -0.5079 -1.0981 24 6 3.5769 -1.2054 -0.0011 25 17 4.4403 -2.7115 -0.0018 26 6 2.1956 -1.1993 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6523 2.1332 0.0005 31 1 4.1117 2.1447 0.0108 32 1 5.9233 0.9059 1.9388 33 1 8.3795 0.9044 1.9353 34 1 9.6260 0.0149 0.0201 35 1 7.3023 -1.8697 -4.0312 36 1 5.3954 -2.6398 -5.7159 37 1 1.6523 -2.1328 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239863227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:36 Heat of formation + Delta-G solvation = 61.801485 kcal Electronic energy + Delta-G solvation = -23068.945116 eV Core-core repulsion = 19801.515815 eV Total energy + Delta-G solvation = -3267.429301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84318 -38.74156 -35.79312 -35.62194 -33.61910 -32.69289 -30.44280 -30.15889 -28.60338 -27.75056 -26.11663 -24.52682 -22.31068 -21.96664 -20.46866 -20.41117 -19.35073 -17.28456 -15.91561 -15.58854 -15.29868 -15.16832 -14.75095 -14.30409 -14.09802 -13.67220 -13.34179 -13.11803 -12.99438 -12.73296 -12.46327 -12.23806 -12.09712 -11.58470 -11.22980 -11.15180 -11.02256 -10.94232 -10.83695 -10.52707 -10.45765 -10.38420 -10.01986 -9.65687 -9.53173 -9.29407 -8.47688 -8.24993 -7.75597 -7.01911 -6.51882 -6.40665 -3.88408 1.54681 1.74310 2.22779 2.64598 2.95382 3.13109 3.20775 3.26451 4.07695 4.16218 4.27367 4.60229 4.78407 5.08523 5.21275 5.28435 5.53257 5.59856 5.71069 5.72655 5.73837 5.87892 5.96877 5.98392 6.08515 6.25390 6.39234 6.46633 6.59171 6.70822 6.84491 6.85199 6.91664 7.19005 7.24033 7.26820 7.41213 7.51350 7.67771 7.92300 8.09901 8.38360 8.75781 9.10574 9.24148 9.28950 10.57630 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.008803 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.071671 B = 3180.069265 C = 5012.846002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.003 4.003 7 C -0.169 4.169 8 C -0.119 4.119 9 C -0.147 4.147 10 C 0.082 3.918 11 N -0.592 5.592 12 H 0.393 0.607 13 C -0.096 4.096 14 C 0.025 3.975 15 C -0.399 4.399 16 H 0.076 0.924 17 C 0.056 3.944 18 N -0.836 5.836 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.098 4.098 24 C 0.006 3.994 25 Cl -0.051 7.051 26 C -0.120 4.120 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.191 0.809 36 H 0.270 0.730 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 3.511 7.935 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.114 4.114 5 C -0.014 4.014 6 C -0.003 4.003 7 C -0.190 4.190 8 C -0.138 4.138 9 C -0.169 4.169 10 C -0.029 4.029 11 N -0.193 5.193 12 H 0.226 0.774 13 C -0.220 4.220 14 C 0.020 3.980 15 C -0.432 4.432 16 H 0.094 0.906 17 C -0.153 4.153 18 N -0.468 5.468 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.105 4.105 24 C -0.021 4.021 25 Cl -0.021 7.021 26 C -0.138 4.138 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.207 0.793 36 H 0.081 0.919 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.755 3.190 7.565 9.028 hybrid contribution -0.165 -0.375 -0.625 0.747 sum -3.920 2.814 6.940 8.453 Atomic orbital electron populations 1.20734 0.91274 1.02667 1.01877 1.19728 0.95777 0.92596 1.00772 1.20871 0.93977 0.97233 1.02192 1.21109 0.93671 0.96992 0.99653 1.18663 0.93119 0.91306 0.98296 1.17881 0.89582 0.99163 0.93716 1.20487 0.93733 1.06679 0.98065 1.20263 0.93678 1.02478 0.97381 1.19843 0.97711 1.05663 0.93690 1.18152 0.93787 1.01992 0.88957 1.41560 1.08050 1.54876 1.14817 0.77398 1.23405 0.84103 1.14439 1.00020 1.17972 0.93052 0.98138 0.88840 1.18855 0.91883 1.32659 0.99789 0.90640 1.25549 0.97947 0.95195 0.96636 1.69451 1.30934 1.35941 1.10454 0.86368 0.83546 0.78119 0.79189 1.20089 1.20733 1.18736 1.19286 0.91415 1.03856 0.95943 1.20877 0.91769 0.87666 1.01763 1.98372 1.76981 1.30394 1.96393 1.20771 0.92027 0.98259 1.02791 0.91474 0.91646 0.91691 0.86120 0.85564 0.87664 0.87474 0.88215 0.79252 0.91905 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.09 -1.36 5.88 -104.55 -0.62 -1.98 16 3 C -0.12 -1.90 9.68 -39.63 -0.38 -2.28 16 4 C -0.10 -1.67 9.74 -39.23 -0.38 -2.05 16 5 C -0.01 -0.26 4.32 -104.88 -0.45 -0.72 16 6 C 0.00 -0.06 4.67 -104.73 -0.49 -0.55 16 7 C -0.17 -3.20 9.73 -39.21 -0.38 -3.58 16 8 C -0.12 -2.12 10.00 -39.62 -0.40 -2.52 16 9 C -0.15 -2.81 10.06 -39.33 -0.40 -3.21 16 10 C 0.08 1.83 7.23 -83.91 -0.61 1.22 16 11 N -0.59 -12.88 5.99 -9.81 -0.06 -12.94 16 12 H 0.39 7.04 8.96 -40.82 -0.37 6.68 16 13 C -0.10 -2.41 10.89 -15.61 -0.17 -2.58 16 14 C 0.03 0.66 5.63 -104.83 -0.59 0.07 16 15 C -0.40 -10.56 7.72 -38.01 -0.29 -10.85 16 16 H 0.08 1.97 4.71 -52.48 -0.25 1.73 16 17 C 0.06 1.44 5.49 -17.33 -0.10 1.35 16 18 N -0.84 -21.87 10.33 55.54 0.57 -21.30 16 19 Si 0.90 20.11 29.56 -169.99 -5.02 15.08 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 23 C -0.10 -2.35 5.37 -104.64 -0.56 -2.91 16 24 C 0.01 0.12 4.06 -39.14 -0.16 -0.04 16 25 Cl -0.05 -1.06 25.79 -51.86 -1.34 -2.40 16 26 C -0.12 -2.10 9.47 -39.60 -0.37 -2.47 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.19 4.96 5.68 -52.49 -0.30 4.67 16 36 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -28.76 323.25 -10.81 -39.57 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -3.84 Total: 11.14 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -5.99 Total: -34.02 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.52 Total: -34.24 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.34 Total: -2.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.76 -10.81 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239863227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.371 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds