Wall clock time and date at job start Tue Mar 31 2020 10:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38367 * 119.86125 * 2 1 4 4 C 1.37970 * 120.15845 * 179.72140 * 3 2 1 5 5 C 1.39444 * 119.88032 * 0.57881 * 4 3 2 6 6 C 1.48181 * 120.13964 * 179.72356 * 5 4 3 7 7 C 1.39166 * 120.28415 * 64.74247 * 6 5 4 8 8 C 1.38321 * 120.10520 * 179.97438 * 7 6 5 9 9 C 1.38037 * 120.77535 * 0.04832 * 8 7 6 10 10 C 1.39123 * 120.23799 * 359.95356 * 9 8 7 11 11 N 1.38182 * 132.74314 * 179.97438 * 10 9 8 12 12 H 0.96999 * 124.70350 * 0.02562 * 11 10 9 13 13 C 1.35590 * 110.59544 * 180.02562 * 11 10 9 14 14 C 1.38995 * 109.24963 * 0.02562 * 13 11 10 15 15 C 1.40953 * 126.93221 * 179.73745 * 14 13 11 16 16 H 1.08003 * 120.00314 * 180.02562 * 15 14 13 17 17 C 1.39688 * 119.99910 * 0.02601 * 15 14 13 18 18 N 1.31076 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99835 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47274 * 90.00412 * 19 17 15 21 21 H 1.48497 * 109.47021 * 209.99834 * 19 17 15 22 22 H 1.48490 * 109.47393 * 329.99937 * 19 17 15 23 23 C 1.40203 * 120.27993 * 244.72723 * 6 5 4 24 24 C 1.39525 * 119.72285 * 359.44831 * 5 4 3 25 25 Cl 1.73606 * 120.07832 * 180.27080 * 24 5 4 26 26 C 1.38137 * 119.84452 * 0.25128 * 24 5 4 27 27 H 1.08998 * 109.47019 * 269.97011 * 1 2 3 28 28 H 1.08991 * 109.47282 * 29.97136 * 1 2 3 29 29 H 1.09001 * 109.47055 * 149.97741 * 1 2 3 30 30 H 1.08005 * 119.91948 * 0.02905 * 3 2 1 31 31 H 1.08002 * 120.06173 * 180.30430 * 4 3 2 32 32 H 1.08004 * 119.94616 * 359.97438 * 7 6 5 33 33 H 1.08008 * 119.61507 * 180.02562 * 8 7 6 34 34 H 1.08005 * 119.88176 * 179.97438 * 9 8 7 35 35 H 1.07995 * 125.37955 * 179.97438 * 13 11 10 36 36 H 0.97003 * 120.00067 * 180.02562 * 18 17 15 37 37 H 1.07999 * 119.94541 * 179.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5756 1.2071 0.0058 5 6 4.2766 0.0017 -0.0005 6 6 5.7584 0.0027 -0.0005 7 6 6.4599 0.5103 1.0890 8 6 7.8431 0.5089 1.0853 9 6 8.5460 0.0085 0.0079 10 6 7.8683 -0.5045 -1.0936 11 7 8.2978 -1.0576 -2.2848 12 1 9.2274 -1.1736 -2.5364 13 6 7.2397 -1.4158 -3.0533 14 6 6.0615 -1.1054 -2.3842 15 6 4.7458 -1.3147 -2.8445 16 1 3.9062 -1.0288 -2.2282 17 6 4.5278 -1.8919 -4.0977 18 7 5.5468 -2.2393 -4.8455 19 14 2.7841 -2.1686 -4.7080 20 1 2.3254 -0.9705 -5.4560 21 1 2.7553 -3.3524 -5.6040 22 1 1.8854 -2.4029 -3.5493 23 6 6.4657 -0.5079 -1.0981 24 6 3.5769 -1.2054 -0.0011 25 17 4.4403 -2.7115 -0.0018 26 6 2.1956 -1.1993 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6523 2.1332 0.0005 31 1 4.1117 2.1447 0.0108 32 1 5.9233 0.9059 1.9388 33 1 8.3795 0.9044 1.9353 34 1 9.6260 0.0149 0.0201 35 1 7.3023 -1.8697 -4.0312 36 1 5.3954 -2.6398 -5.7159 37 1 1.6523 -2.1328 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239863227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:35 Heat of formation + Delta-G solvation = 48.915040 kcal Electronic energy + Delta-G solvation = -23069.503915 eV Core-core repulsion = 19801.515815 eV Total energy + Delta-G solvation = -3267.988099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.44900 -40.11005 -37.34898 -37.12133 -35.39989 -34.11541 -31.92571 -31.53056 -30.17271 -29.41061 -27.49183 -26.26534 -23.63785 -23.40095 -22.07186 -21.86299 -21.12988 -18.86545 -17.71233 -17.18927 -16.78269 -16.47937 -16.21447 -15.93050 -15.60597 -14.99303 -14.68065 -14.63225 -14.43920 -14.29487 -14.09598 -13.53974 -13.15732 -13.07260 -12.94210 -12.82741 -12.57457 -12.46731 -12.22170 -12.03408 -11.94180 -11.91012 -11.59727 -11.48579 -11.19002 -11.12803 -10.03146 -9.65222 -9.18133 -8.66120 -8.30319 -8.27994 -5.81874 0.16103 0.41554 0.72056 1.07455 1.36500 1.38415 1.49661 1.50056 2.32822 2.39203 2.75896 2.97866 3.17400 3.77445 3.81904 3.99643 4.07226 4.32939 4.39550 4.49178 4.49487 4.61292 4.70292 4.87669 4.90030 4.92944 5.02304 5.08369 5.21225 5.30841 5.39855 5.44630 5.51165 5.56088 5.63791 5.75670 5.89957 6.01730 6.07274 6.10452 6.34181 6.63564 6.92072 7.26531 7.35782 7.50001 8.68665 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.008803 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.071671 B = 3180.069265 C = 5012.846002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.042 4.042 6 C -0.015 4.015 7 C -0.167 4.167 8 C -0.106 4.106 9 C -0.152 4.152 10 C 0.069 3.931 11 N -0.590 5.590 12 H 0.408 0.592 13 C -0.117 4.117 14 C -0.003 4.003 15 C -0.413 4.413 16 H 0.073 0.927 17 C 0.011 3.989 18 N -0.862 5.862 19 Si 0.955 3.045 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.131 4.131 24 C -0.014 4.014 25 Cl -0.076 7.076 26 C -0.135 4.135 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.175 0.825 36 H 0.272 0.728 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 5.413 9.851 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.043 4.043 6 C -0.015 4.015 7 C -0.187 4.187 8 C -0.125 4.125 9 C -0.173 4.173 10 C -0.042 4.042 11 N -0.193 5.193 12 H 0.243 0.757 13 C -0.241 4.241 14 C -0.009 4.009 15 C -0.447 4.447 16 H 0.091 0.909 17 C -0.195 4.195 18 N -0.495 5.495 19 Si 0.779 3.221 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.137 4.137 24 C -0.040 4.040 25 Cl -0.047 7.047 26 C -0.153 4.153 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.149 0.851 35 H 0.191 0.809 36 H 0.082 0.918 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.995 5.100 9.498 11.881 hybrid contribution 0.242 -0.851 -1.037 1.363 sum -4.753 4.249 8.461 10.594 Atomic orbital electron populations 1.20828 0.88208 1.03722 1.03626 1.20219 0.97945 0.91718 0.98512 1.21305 0.93273 0.98795 1.00271 1.21365 0.94852 0.96499 0.99413 1.18808 0.92799 0.92330 1.00373 1.18186 0.90724 0.98986 0.93645 1.20912 0.94559 1.05419 0.97851 1.20804 0.93464 1.00316 0.97919 1.20251 0.99466 1.04876 0.92752 1.18614 0.93821 1.02084 0.89661 1.41366 1.08161 1.55152 1.14642 0.75670 1.23174 0.85352 1.15505 1.00095 1.18292 0.93251 0.98925 0.90403 1.19000 0.92178 1.33290 1.00183 0.90937 1.26270 1.01210 0.95198 0.96820 1.69562 1.32299 1.36886 1.10760 0.85546 0.79687 0.78152 0.78702 1.19610 1.20200 1.18404 1.19502 0.92603 1.05413 0.96228 1.21069 0.92621 0.86782 1.03577 1.98349 1.77728 1.32001 1.96657 1.21042 0.91308 0.99816 1.03168 0.89232 0.89775 0.91503 0.82370 0.84330 0.85118 0.83174 0.85106 0.80869 0.91776 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 10.01 71.24 0.71 -1.37 16 2 C -0.08 -2.36 5.88 -19.82 -0.12 -2.48 16 3 C -0.12 -3.26 9.68 22.24 0.22 -3.05 16 4 C -0.10 -3.42 9.74 22.50 0.22 -3.20 16 5 C -0.04 -1.69 4.32 -20.03 -0.09 -1.77 16 6 C -0.01 -0.63 4.67 -19.93 -0.09 -0.72 16 7 C -0.17 -5.95 9.73 22.51 0.22 -5.73 16 8 C -0.11 -3.43 10.00 22.24 0.22 -3.21 16 9 C -0.15 -5.46 10.06 22.43 0.23 -5.23 16 10 C 0.07 3.05 7.23 38.85 0.28 3.33 16 11 N -0.59 -26.33 5.99 -184.94 -1.11 -27.43 16 12 H 0.41 14.91 8.96 -92.71 -0.83 14.08 16 13 C -0.12 -6.18 10.89 84.29 0.92 -5.26 16 14 C 0.00 -0.18 5.63 -20.00 -0.11 -0.29 16 15 C -0.41 -22.66 7.72 23.29 0.18 -22.48 16 16 H 0.07 3.91 4.71 -2.91 -0.01 3.90 16 17 C 0.01 0.58 5.49 85.16 0.47 1.04 16 18 N -0.86 -47.06 10.33 21.79 0.23 -46.84 16 19 Si 0.95 41.97 29.56 68.60 2.03 43.99 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.13 -6.37 5.37 -19.88 -0.11 -6.48 16 24 C -0.01 -0.56 4.06 22.56 0.09 -0.47 16 25 Cl -0.08 -3.31 25.79 -2.72 -0.07 -3.38 16 26 C -0.13 -4.61 9.47 22.26 0.21 -4.40 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 29 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.17 9.66 5.68 -2.91 -0.02 9.65 16 36 H 0.27 13.83 8.30 -92.71 -0.77 13.06 16 37 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -65.36 323.25 4.81 -60.55 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.29 Total: 34.87 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 3.45 Total: -61.76 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -0.88 Total: -74.27 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.38 kcal Total: -65.36 4.81 -60.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239863227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.464 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds