Wall clock time and date at job start Tue Mar 31 2020 09:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 109.46911 * 2 1 4 4 C 1.76192 * 102.99919 * 109.05798 * 2 1 3 5 5 C 1.38385 * 119.85855 * 89.99911 * 4 2 1 6 6 C 1.37945 * 120.14530 * 179.97438 * 5 4 2 7 7 C 1.39581 * 119.85301 * 0.02562 * 6 5 4 8 8 C 1.48026 * 120.14087 * 179.97438 * 7 6 5 9 9 C 1.39972 * 119.49736 * 359.97086 * 8 7 6 10 10 C 1.36023 * 121.19249 * 179.76038 * 9 8 7 11 11 C 1.41035 * 120.10300 * 0.52508 * 10 9 8 12 12 C 1.40458 * 120.48674 * 179.76415 * 11 10 9 13 13 H 1.07998 * 119.99998 * 208.61246 * 12 11 10 14 14 C 1.40306 * 119.99678 * 28.60938 * 12 11 10 15 15 N 1.30640 * 119.99484 * 197.65800 * 14 12 11 16 16 Si 1.86797 * 120.00464 * 17.65923 * 14 12 11 17 17 H 1.48501 * 109.47037 * 269.99879 * 16 14 12 18 18 H 1.48503 * 109.46728 * 29.99897 * 16 14 12 19 19 H 1.48498 * 109.47162 * 149.99823 * 16 14 12 20 20 C 1.46639 * 119.02645 * 359.48662 * 11 10 9 21 21 C 1.43196 * 120.56914 * 180.22890 * 20 11 10 22 22 N 9.99283 * 102.18775 * 88.44519 * 2 1 3 23 23 C 1.39096 * 118.86716 * 0.25558 * 20 11 10 24 24 C 1.39588 * 119.71926 * 0.25038 * 7 6 5 25 25 C 1.37946 * 119.85190 * 359.49467 * 24 7 6 26 26 H 1.08998 * 109.46911 * 310.94454 * 1 2 3 27 27 H 1.09004 * 109.47019 * 70.94205 * 1 2 3 28 28 H 1.08992 * 109.47149 * 190.94063 * 1 2 3 29 29 H 1.08004 * 119.92931 * 359.97438 * 5 4 2 30 30 H 1.07998 * 120.07096 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.40463 * 0.04721 * 9 8 7 32 32 H 1.07999 * 119.94657 * 180.28787 * 10 9 8 33 33 H 0.96999 * 120.00347 * 355.45056 * 15 14 12 34 34 H 1.07996 * 120.10024 * 179.97438 * 23 20 11 35 35 H 1.07999 * 120.07313 * 179.73083 * 24 7 6 36 36 H 1.07997 * 119.93170 * 180.23537 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3653 -1.9141 1.8653 6 6 2.6761 -2.3595 3.1334 7 6 2.8338 -1.4415 4.1730 8 6 3.1668 -1.9125 5.5362 9 6 3.3212 -3.2833 5.7733 10 6 3.6317 -3.7535 7.0113 11 6 3.7936 -2.8574 8.0883 12 6 4.1095 -3.3346 9.3710 13 1 3.7951 -2.7831 10.2448 14 6 4.8332 -4.5276 9.5171 15 7 4.8353 -5.1541 10.6635 16 14 5.7939 -5.2203 8.0726 17 1 4.9229 -6.1354 7.2921 18 1 6.2490 -4.1070 7.2015 19 1 6.9734 -5.9690 8.5759 20 6 3.6335 -1.4198 7.8479 21 6 3.7954 -0.4802 8.9164 22 7 3.9237 0.2650 9.7640 23 6 3.3211 -0.9842 6.5643 24 6 2.6705 -0.0780 3.9228 25 6 2.3649 0.3547 2.6492 26 1 -0.3633 0.6735 0.7762 27 1 -0.3633 0.3356 -0.9714 28 1 -0.3633 -1.0089 0.1950 29 1 2.2427 -2.6234 1.0601 30 1 2.7972 -3.4161 3.3213 31 1 3.1960 -3.9799 4.9576 32 1 3.7507 -4.8151 7.1706 33 1 4.3916 -4.7615 11.4316 34 1 3.1982 0.0700 6.3650 35 1 2.7868 0.6369 4.7239 36 1 2.2420 1.4096 2.4534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241484431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:49 Heat of formation + Delta-G solvation = 22.257157 kcal Electronic energy + Delta-G solvation = -21308.563538 eV Core-core repulsion = 18041.463173 eV Total energy + Delta-G solvation = -3267.100365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.072 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.25737 -37.75591 -35.72415 -35.41506 -34.49668 -32.15671 -31.16029 -30.18534 -29.39097 -28.81647 -25.58223 -23.52515 -22.37876 -21.51108 -20.97611 -18.71189 -18.10354 -17.69216 -16.51127 -15.43057 -15.29234 -14.93065 -14.83851 -14.51384 -14.28899 -13.87912 -13.65251 -13.48572 -13.19210 -13.04702 -12.91841 -12.73470 -12.58135 -12.22521 -12.09360 -11.88523 -11.65504 -11.50783 -11.19444 -11.12179 -10.79757 -10.46881 -10.27425 -10.16150 -9.86078 -9.56818 -9.10473 -8.77529 -8.47286 -8.18761 -8.01110 -7.53162 -5.09086 0.89347 1.63715 1.79183 1.88966 2.38432 2.73269 2.90428 3.07360 3.25793 3.59563 3.62910 3.67806 3.88024 4.14416 4.29364 4.91161 5.01666 5.03480 5.07540 5.10586 5.13983 5.34188 5.43992 5.62728 5.67711 5.80170 5.81733 6.10106 6.17833 6.25630 6.34859 6.45012 6.50682 6.64260 6.80084 6.90562 7.04043 7.15595 7.25077 7.34746 7.42271 7.78451 7.88560 8.11904 8.51753 9.37750 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003177 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.434566 B = 8811.776998 C = 9701.471954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.327 4.673 3 O -0.867 6.867 4 C -0.499 4.499 5 C -0.033 4.033 6 C -0.163 4.163 7 C 0.059 3.941 8 C -0.222 4.222 9 C -0.021 4.021 10 C -0.243 4.243 11 C 0.132 3.868 12 C -0.454 4.454 13 H 0.087 0.913 14 C 0.037 3.963 15 N -0.767 5.767 16 Si 1.073 2.927 17 H -0.267 1.267 18 H -0.253 1.253 19 H -0.282 1.282 20 C -0.174 4.174 21 C 0.294 3.706 22 N -0.493 5.493 23 C 0.016 3.984 24 C -0.162 4.162 25 C -0.040 4.040 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.296 0.704 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 -2.514 -18.951 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.525 4.475 3 O -0.863 6.863 4 C -0.597 4.597 5 C -0.052 4.052 6 C -0.182 4.182 7 C 0.059 3.941 8 C -0.224 4.224 9 C -0.039 4.039 10 C -0.261 4.261 11 C 0.126 3.874 12 C -0.479 4.479 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.385 5.385 16 Si 0.897 3.103 17 H -0.193 1.193 18 H -0.177 1.177 19 H -0.209 1.209 20 C -0.180 4.180 21 C -0.016 4.016 22 N -0.172 5.172 23 C -0.005 4.005 24 C -0.182 4.182 25 C -0.059 4.059 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.017 -2.366 -18.672 19.062 hybrid contribution -2.091 2.282 2.389 3.910 sum -5.108 -0.085 -16.284 17.066 Atomic orbital electron populations 1.27793 1.23329 1.07707 1.06725 1.69121 0.85589 0.99358 0.93410 1.93080 1.73069 1.37396 1.82738 1.27176 1.17412 0.99672 1.15419 1.20624 0.94712 0.93185 0.96679 1.21288 1.04564 0.99657 0.92667 1.19076 0.89825 0.92490 0.92704 1.17791 1.20023 0.93120 0.91437 1.20481 0.93661 0.93862 0.95940 1.20772 1.12965 0.98726 0.93647 1.18574 0.87349 0.88758 0.92737 1.21062 1.26357 1.06356 0.94172 0.89480 1.27826 0.95343 0.92534 1.03107 1.70444 1.30791 1.34703 1.02537 0.83597 0.76005 0.77805 0.72932 1.19313 1.17727 1.20888 1.16750 1.22585 0.89688 0.88938 1.25662 0.91599 0.91914 0.92464 1.81057 1.13950 1.11667 1.10495 1.20774 0.91397 0.97681 0.90664 1.21273 1.04547 0.95514 0.96829 1.20882 0.93943 0.98747 0.92342 0.90256 0.88172 0.87274 0.85320 0.85449 0.87410 0.86436 0.89147 0.87346 0.86102 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.90 10.70 101.05 1.08 -2.82 16 2 S 1.33 11.83 14.18 -107.50 -1.52 10.30 16 3 O -0.87 -13.63 16.89 -35.23 -0.59 -14.22 16 4 C -0.50 -6.05 5.62 -39.47 -0.22 -6.27 16 5 C -0.03 -0.35 9.73 -39.63 -0.39 -0.73 16 6 C -0.16 -2.14 9.42 -39.19 -0.37 -2.51 16 7 C 0.06 0.95 5.88 -104.88 -0.62 0.33 16 8 C -0.22 -3.97 5.88 -104.81 -0.62 -4.59 16 9 C -0.02 -0.36 9.30 -39.73 -0.37 -0.73 16 10 C -0.24 -4.78 7.21 -39.32 -0.28 -5.06 16 11 C 0.13 2.90 5.31 -104.61 -0.56 2.35 16 12 C -0.45 -10.67 8.90 -37.97 -0.34 -11.01 16 13 H 0.09 2.20 7.62 -52.49 -0.40 1.80 16 14 C 0.04 0.84 5.42 -17.28 -0.09 0.75 16 15 N -0.77 -17.84 13.64 55.57 0.76 -17.09 16 16 Si 1.07 20.31 24.90 -169.99 -4.23 16.08 16 17 H -0.27 -4.58 6.44 56.52 0.36 -4.21 16 18 H -0.25 -4.76 7.02 56.52 0.40 -4.36 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 C -0.17 -3.72 5.93 -104.27 -0.62 -4.34 16 21 C 0.29 6.63 14.34 -22.48 -0.32 6.31 16 22 N -0.49 -11.58 18.54 41.83 0.78 -10.80 16 23 C 0.02 0.30 9.12 -38.84 -0.35 -0.05 16 24 C -0.16 -2.56 9.42 -39.19 -0.37 -2.93 16 25 C -0.04 -0.60 9.43 -39.63 -0.37 -0.97 16 26 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 30 H 0.13 1.44 6.13 -52.49 -0.32 1.12 16 31 H 0.11 1.54 6.09 -52.49 -0.32 1.22 16 32 H 0.12 2.21 4.38 -52.49 -0.23 1.99 16 33 H 0.30 6.75 8.72 -40.82 -0.36 6.39 16 34 H 0.11 1.86 6.13 -52.49 -0.32 1.53 16 35 H 0.12 1.83 6.15 -52.49 -0.32 1.51 16 36 H 0.12 1.82 7.44 -52.49 -0.39 1.43 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -30.53 325.47 -7.91 -38.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.19 Total: 4.68 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -4.81 Total: -32.30 kcal Atomic # 7 Polarization: -29.42 SS G_CDS: 1.53 Total: -27.89 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.59 Total: -14.22 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.23 Total: 16.08 kcal Atomic # 16 Polarization: 11.83 SS G_CDS: -1.52 Total: 10.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.53 -7.91 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.699 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds