Wall clock time and date at job start Tue Mar 31 2020 09:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 109.46911 * 2 1 4 4 C 1.76192 * 102.99919 * 109.05798 * 2 1 3 5 5 C 1.38385 * 119.85855 * 89.99911 * 4 2 1 6 6 C 1.37945 * 120.14530 * 179.97438 * 5 4 2 7 7 C 1.39581 * 119.85301 * 0.02562 * 6 5 4 8 8 C 1.48026 * 120.14087 * 179.97438 * 7 6 5 9 9 C 1.39972 * 119.49736 * 359.97086 * 8 7 6 10 10 C 1.36023 * 121.19249 * 179.76038 * 9 8 7 11 11 C 1.41035 * 120.10300 * 0.52508 * 10 9 8 12 12 C 1.40458 * 120.48674 * 179.76415 * 11 10 9 13 13 H 1.07998 * 119.99998 * 208.61246 * 12 11 10 14 14 C 1.40306 * 119.99678 * 28.60938 * 12 11 10 15 15 N 1.30640 * 119.99484 * 197.65800 * 14 12 11 16 16 Si 1.86797 * 120.00464 * 17.65923 * 14 12 11 17 17 H 1.48501 * 109.47037 * 269.99879 * 16 14 12 18 18 H 1.48503 * 109.46728 * 29.99897 * 16 14 12 19 19 H 1.48498 * 109.47162 * 149.99823 * 16 14 12 20 20 C 1.46639 * 119.02645 * 359.48662 * 11 10 9 21 21 C 1.43196 * 120.56914 * 180.22890 * 20 11 10 22 22 N 9.99283 * 102.18775 * 88.44519 * 2 1 3 23 23 C 1.39096 * 118.86716 * 0.25558 * 20 11 10 24 24 C 1.39588 * 119.71926 * 0.25038 * 7 6 5 25 25 C 1.37946 * 119.85190 * 359.49467 * 24 7 6 26 26 H 1.08998 * 109.46911 * 310.94454 * 1 2 3 27 27 H 1.09004 * 109.47019 * 70.94205 * 1 2 3 28 28 H 1.08992 * 109.47149 * 190.94063 * 1 2 3 29 29 H 1.08004 * 119.92931 * 359.97438 * 5 4 2 30 30 H 1.07998 * 120.07096 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.40463 * 0.04721 * 9 8 7 32 32 H 1.07999 * 119.94657 * 180.28787 * 10 9 8 33 33 H 0.96999 * 120.00347 * 355.45056 * 15 14 12 34 34 H 1.07996 * 120.10024 * 179.97438 * 23 20 11 35 35 H 1.07999 * 120.07313 * 179.73083 * 24 7 6 36 36 H 1.07997 * 119.93170 * 180.23537 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3653 -1.9141 1.8653 6 6 2.6761 -2.3595 3.1334 7 6 2.8338 -1.4415 4.1730 8 6 3.1668 -1.9125 5.5362 9 6 3.3212 -3.2833 5.7733 10 6 3.6317 -3.7535 7.0113 11 6 3.7936 -2.8574 8.0883 12 6 4.1095 -3.3346 9.3710 13 1 3.7951 -2.7831 10.2448 14 6 4.8332 -4.5276 9.5171 15 7 4.8353 -5.1541 10.6635 16 14 5.7939 -5.2203 8.0726 17 1 4.9229 -6.1354 7.2921 18 1 6.2490 -4.1070 7.2015 19 1 6.9734 -5.9690 8.5759 20 6 3.6335 -1.4198 7.8479 21 6 3.7954 -0.4802 8.9164 22 7 3.9237 0.2650 9.7640 23 6 3.3211 -0.9842 6.5643 24 6 2.6705 -0.0780 3.9228 25 6 2.3649 0.3547 2.6492 26 1 -0.3633 0.6735 0.7762 27 1 -0.3633 0.3356 -0.9714 28 1 -0.3633 -1.0089 0.1950 29 1 2.2427 -2.6234 1.0601 30 1 2.7972 -3.4161 3.3213 31 1 3.1960 -3.9799 4.9576 32 1 3.7507 -4.8151 7.1706 33 1 4.3916 -4.7615 11.4316 34 1 3.1982 0.0700 6.3650 35 1 2.7868 0.6369 4.7239 36 1 2.2420 1.4096 2.4534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241484431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:48 Heat of formation + Delta-G solvation = 3.371507 kcal Electronic energy + Delta-G solvation = -21309.382482 eV Core-core repulsion = 18041.463173 eV Total energy + Delta-G solvation = -3267.919309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53598 -39.15069 -37.20110 -36.78399 -36.06520 -33.55108 -32.46661 -31.49804 -30.69763 -29.52510 -27.06395 -24.88195 -23.70785 -22.84798 -22.36658 -20.31726 -19.26035 -18.90874 -17.54170 -16.77068 -16.71178 -16.20658 -15.92189 -15.72113 -15.59064 -15.08099 -14.95877 -14.65662 -14.58346 -14.40731 -14.19547 -13.91909 -13.83837 -13.63568 -13.50232 -13.16643 -13.01498 -12.78599 -12.61446 -12.43003 -12.17490 -11.83899 -11.73800 -11.42897 -11.17429 -10.99553 -10.46108 -9.81510 -9.73115 -9.68164 -9.38503 -8.95584 -6.79152 -0.24364 0.21142 0.56920 0.82962 1.16563 1.40209 1.59070 1.80229 1.81923 1.91719 2.11543 2.19192 2.51848 2.89873 3.12125 3.34023 3.44751 3.85665 3.98978 4.09219 4.21857 4.33345 4.39061 4.53314 4.59387 4.65048 4.74911 4.84069 4.99731 5.08754 5.16170 5.22931 5.23829 5.28770 5.40864 5.46241 5.61556 5.64620 5.80088 5.97491 6.10310 6.14951 6.30978 6.50259 6.73461 7.68366 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.003177 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.434566 B = 8811.776998 C = 9701.471954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.404 4.596 3 O -0.935 6.935 4 C -0.494 4.494 5 C -0.020 4.020 6 C -0.154 4.154 7 C 0.025 3.975 8 C -0.198 4.198 9 C -0.012 4.012 10 C -0.247 4.247 11 C 0.127 3.873 12 C -0.502 4.502 13 H 0.045 0.955 14 C 0.013 3.987 15 N -0.800 5.800 16 Si 1.098 2.902 17 H -0.227 1.227 18 H -0.252 1.252 19 H -0.282 1.282 20 C -0.197 4.197 21 C 0.298 3.702 22 N -0.524 5.524 23 C 0.004 3.996 24 C -0.173 4.173 25 C -0.069 4.069 26 H 0.054 0.946 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.194 0.806 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.284 0.716 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -4.799 -25.056 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.603 4.397 3 O -0.932 6.932 4 C -0.590 4.590 5 C -0.038 4.038 6 C -0.173 4.173 7 C 0.025 3.975 8 C -0.199 4.199 9 C -0.030 4.030 10 C -0.266 4.266 11 C 0.121 3.879 12 C -0.529 4.529 13 H 0.063 0.937 14 C -0.206 4.206 15 N -0.420 5.420 16 Si 0.915 3.085 17 H -0.151 1.151 18 H -0.176 1.176 19 H -0.209 1.209 20 C -0.203 4.203 21 C -0.011 4.011 22 N -0.203 5.203 23 C -0.016 4.016 24 C -0.192 4.192 25 C -0.089 4.089 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.211 0.789 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.246 -4.639 -24.761 25.547 hybrid contribution -1.956 3.250 3.753 5.336 sum -6.202 -1.389 -21.009 21.949 Atomic orbital electron populations 1.27782 1.21288 1.09351 1.07169 1.68319 0.85442 0.96155 0.89798 1.92964 1.75843 1.41108 1.83239 1.27785 1.14892 1.00379 1.15979 1.21325 0.91734 0.93248 0.97506 1.21746 1.02372 1.00543 0.92596 1.19083 0.92880 0.93009 0.92532 1.18189 1.16302 0.93292 0.92110 1.20942 0.91400 0.94303 0.96351 1.20975 1.12900 0.99031 0.93683 1.18778 0.86778 0.89294 0.93030 1.20849 1.30482 1.07886 0.93665 0.93673 1.28920 0.94886 0.92282 1.04500 1.70519 1.33067 1.35492 1.02915 0.83392 0.75720 0.78091 0.71267 1.15067 1.17607 1.20885 1.17009 1.24202 0.89533 0.89516 1.26086 0.90956 0.91653 0.92415 1.81016 1.15334 1.12802 1.11161 1.20971 0.91716 0.98879 0.90069 1.21312 1.04860 0.95887 0.97128 1.20917 0.96003 0.98796 0.93149 0.92627 0.86169 0.83968 0.78937 0.82483 0.82567 0.85126 0.90485 0.86354 0.87117 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.31 10.70 113.37 1.21 -4.10 16 2 S 1.40 18.95 14.18 -56.49 -0.80 18.15 16 3 O -0.94 -27.56 16.89 -148.98 -2.52 -30.07 16 4 C -0.49 -9.77 5.62 22.34 0.13 -9.64 16 5 C -0.02 -0.28 9.73 22.24 0.22 -0.06 16 6 C -0.15 -3.05 9.42 22.52 0.21 -2.84 16 7 C 0.03 0.71 5.88 -20.03 -0.12 0.59 16 8 C -0.20 -6.52 5.88 -19.99 -0.12 -6.64 16 9 C -0.01 -0.36 9.30 22.18 0.21 -0.15 16 10 C -0.25 -9.21 7.21 22.44 0.16 -9.05 16 11 C 0.13 5.72 5.31 -19.86 -0.11 5.61 16 12 C -0.50 -25.27 8.90 23.31 0.21 -25.06 16 13 H 0.04 2.55 7.62 -2.91 -0.02 2.53 16 14 C 0.01 0.61 5.42 85.37 0.46 1.07 16 15 N -0.80 -39.70 13.64 21.89 0.30 -39.40 16 16 Si 1.10 39.96 24.90 68.60 1.71 41.67 16 17 H -0.23 -6.77 6.44 99.48 0.64 -6.13 16 18 H -0.25 -9.01 7.02 99.48 0.70 -8.31 16 19 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 20 C -0.20 -8.70 5.93 -19.63 -0.12 -8.81 16 21 C 0.30 14.29 14.34 88.33 1.27 15.56 16 22 N -0.52 -26.20 18.54 19.00 0.35 -25.85 16 23 C 0.00 0.16 9.12 22.75 0.21 0.37 16 24 C -0.17 -5.20 9.42 22.53 0.21 -4.99 16 25 C -0.07 -1.96 9.43 22.24 0.21 -1.75 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 30 H 0.16 2.20 6.13 -2.91 -0.02 2.19 16 31 H 0.16 3.31 6.09 -2.91 -0.02 3.29 16 32 H 0.13 4.52 4.38 -2.91 -0.01 4.50 16 33 H 0.28 14.23 8.72 -92.71 -0.81 13.42 16 34 H 0.12 4.14 6.13 -2.91 -0.02 4.12 16 35 H 0.11 3.40 6.15 -2.91 -0.02 3.39 16 36 H 0.10 3.12 7.44 -2.91 -0.02 3.10 16 Total: -1.00 -74.32 325.47 4.31 -70.01 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.03 Total: 15.40 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 4.24 Total: -49.90 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: 0.65 Total: -65.25 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -2.52 Total: -30.07 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.71 Total: 41.67 kcal Atomic # 16 Polarization: 18.95 SS G_CDS: -0.80 Total: 18.15 kcal Total: -74.32 4.31 -70.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.378 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds