Wall clock time and date at job start Tue Mar 31 2020 09:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 109.47135 * 2 1 4 4 C 1.76208 * 102.99754 * 109.05375 * 2 1 3 5 5 C 1.38327 * 119.87082 * 90.00372 * 4 2 1 6 6 C 1.38012 * 120.12398 * 179.97438 * 5 4 2 7 7 C 1.39379 * 119.87041 * 359.97438 * 6 5 4 8 8 C 1.48325 * 120.12332 * 180.02562 * 7 6 5 9 9 C 1.39822 * 119.53318 * 359.97438 * 8 7 6 10 10 C 1.37717 * 121.16496 * 179.69084 * 9 8 7 11 11 C 1.39580 * 120.18732 * 0.61772 * 10 9 8 12 12 C 1.43201 * 120.45315 * 179.69131 * 11 10 9 13 13 N 9.62168 * 140.83183 * 181.23608 * 4 1 2 14 14 C 1.46537 * 119.08495 * 359.42067 * 11 10 9 15 15 C 1.40839 * 120.54887 * 180.30131 * 14 11 10 16 16 H 1.08002 * 120.00087 * 329.58731 * 15 14 11 17 17 C 1.40234 * 120.00065 * 149.59102 * 15 14 11 18 18 N 1.30659 * 120.00078 * 162.33709 * 17 15 14 19 19 Si 1.86796 * 119.99930 * 342.34196 * 17 15 14 20 20 H 1.48497 * 109.47351 * 95.41726 * 19 17 15 21 21 H 1.48501 * 109.47051 * 215.41833 * 19 17 15 22 22 H 1.48504 * 109.47300 * 335.41341 * 19 17 15 23 23 C 1.38600 * 119.53708 * 180.02562 * 8 7 6 24 24 C 1.39377 * 119.75374 * 0.27277 * 7 6 5 25 25 C 1.38013 * 119.87058 * 359.47374 * 24 7 6 26 26 H 1.08996 * 109.47121 * 310.94532 * 1 2 3 27 27 H 1.09007 * 109.46729 * 70.94486 * 1 2 3 28 28 H 1.08997 * 109.46731 * 190.94050 * 1 2 3 29 29 H 1.07999 * 119.94177 * 0.02562 * 5 4 2 30 30 H 1.08003 * 120.06392 * 180.02562 * 6 5 4 31 31 H 1.07995 * 119.41254 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.90301 * 180.30794 * 10 9 8 33 33 H 0.97002 * 120.00363 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.13143 * 0.02562 * 23 8 7 35 35 H 1.07998 * 120.06476 * 179.70716 * 24 7 6 36 36 H 1.07999 * 119.93645 * 180.23246 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5605 1.6229 5 6 2.3653 -1.9134 1.8658 6 6 2.6762 -2.3582 3.1347 7 6 2.8345 -1.4411 4.1723 8 6 3.1693 -1.9128 5.5381 9 6 3.3238 -3.2820 5.7759 10 6 3.6406 -3.7564 7.0293 11 6 3.8014 -2.8698 8.0953 12 6 4.1244 -3.3575 9.4025 13 7 4.3743 -3.7447 10.4407 14 6 3.6411 -1.4329 7.8572 15 6 3.8027 -0.5105 8.9091 16 1 3.5606 -0.7982 9.9216 17 6 4.2780 0.7815 8.6420 18 7 4.1090 1.7343 9.5200 19 14 5.1526 1.1404 7.0309 20 1 4.1804 1.6884 6.0513 21 1 6.2327 2.1325 7.2643 22 1 5.7401 -0.1143 6.4964 23 6 3.3234 -0.9903 6.5610 24 6 2.6721 -0.0795 3.9228 25 6 2.3663 0.3542 2.6487 26 1 -0.3633 0.6734 0.7762 27 1 -0.3633 0.3355 -0.9714 28 1 -0.3633 -1.0090 0.1950 29 1 2.2437 -2.6230 1.0608 30 1 2.7975 -3.4147 3.3232 31 1 3.1978 -3.9793 4.9609 32 1 3.7601 -4.8179 7.1889 33 1 4.4375 2.6281 9.3351 34 1 3.1998 0.0642 6.3632 35 1 2.7889 0.6351 4.7241 36 1 2.2439 1.4093 2.4534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241484942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:35 Heat of formation + Delta-G solvation = 8.380734 kcal Electronic energy + Delta-G solvation = -21614.437406 eV Core-core repulsion = 18346.735314 eV Total energy + Delta-G solvation = -3267.702092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.072 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63598 -39.13179 -37.09563 -36.83658 -35.87589 -33.63355 -32.73759 -31.80148 -30.15100 -29.47679 -27.56417 -25.12450 -24.12336 -22.49360 -22.21100 -19.72588 -19.33581 -18.93186 -17.86788 -17.16582 -16.51242 -16.38836 -15.90383 -15.74285 -15.46777 -15.13226 -14.83783 -14.65590 -14.57219 -14.48551 -14.19177 -14.04043 -13.80990 -13.62772 -13.48520 -13.18893 -13.17282 -12.90026 -12.72405 -12.60635 -12.28666 -12.14163 -11.85140 -11.55632 -11.25948 -11.15543 -10.55919 -9.91100 -9.69115 -9.43770 -9.15971 -8.91372 -6.74891 -0.56514 0.42289 0.51213 0.76520 1.05771 1.14362 1.25824 1.35713 1.83008 1.91803 1.94835 2.19359 2.51087 2.81472 3.06325 3.45091 3.45747 3.74089 3.84456 4.04000 4.18046 4.36801 4.38830 4.48674 4.59075 4.60522 4.61927 4.87307 4.90658 5.00084 5.13123 5.15488 5.23237 5.29881 5.33011 5.45505 5.61214 5.68424 5.91418 5.96291 6.01620 6.16618 6.42706 6.53052 6.84833 7.90880 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.003950 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.607289 B = 7086.245300 C = 8345.704582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.410 4.590 3 O -0.933 6.933 4 C -0.472 4.472 5 C -0.025 4.025 6 C -0.120 4.120 7 C -0.023 4.023 8 C 0.004 3.996 9 C -0.207 4.207 10 C -0.010 4.010 11 C -0.178 4.178 12 C 0.301 3.699 13 N -0.519 5.519 14 C 0.118 3.882 15 C -0.461 4.461 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.821 5.821 19 Si 0.951 3.049 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.240 1.240 23 C -0.236 4.236 24 C -0.157 4.157 25 C -0.079 4.079 26 H 0.054 0.946 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.204 0.796 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.301 0.699 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 -9.082 -26.253 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.608 4.392 3 O -0.929 6.929 4 C -0.568 4.568 5 C -0.043 4.043 6 C -0.139 4.139 7 C -0.023 4.023 8 C 0.003 3.997 9 C -0.225 4.225 10 C -0.030 4.030 11 C -0.184 4.184 12 C -0.009 4.009 13 N -0.198 5.198 14 C 0.113 3.887 15 C -0.490 4.490 16 H 0.075 0.925 17 C -0.164 4.164 18 N -0.445 5.445 19 Si 0.773 3.227 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.163 1.163 23 C -0.255 4.255 24 C -0.176 4.176 25 C -0.098 4.098 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.221 0.779 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.165 0.835 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.572 -9.130 -25.186 27.177 hybrid contribution -0.609 2.949 2.386 3.842 sum -5.181 -6.181 -22.800 24.185 Atomic orbital electron populations 1.27778 1.20879 1.09599 1.07337 1.68372 0.85635 0.96226 0.88995 1.92982 1.75928 1.41135 1.82820 1.28028 1.12205 1.00485 1.16062 1.21481 0.91963 0.93229 0.97671 1.21880 0.99085 1.00829 0.92083 1.19337 0.96357 0.93207 0.93399 1.18854 0.95546 0.94297 0.90954 1.20800 1.10913 0.93340 0.97468 1.20981 0.92670 0.98659 0.90726 1.17262 1.20786 0.93273 0.87077 1.25988 0.91134 0.90952 0.92821 1.81023 1.15007 1.11813 1.11997 1.18494 0.87808 0.90423 0.92022 1.19517 1.38286 0.95710 0.95437 0.92521 1.26889 0.93899 0.94359 1.01208 1.69612 1.33985 1.03431 1.37487 0.85706 0.79073 0.80175 0.77730 1.18098 1.19896 1.16265 1.21119 1.12415 0.98510 0.93444 1.21443 1.02660 0.96256 0.97263 1.20944 0.96737 0.99203 0.92896 0.92620 0.85954 0.83632 0.77879 0.81264 0.81986 0.83466 0.88766 0.87946 0.88219 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.00 10.70 113.37 1.21 -3.79 16 2 S 1.41 18.23 14.18 -56.49 -0.80 17.43 16 3 O -0.93 -27.39 16.89 -148.98 -2.52 -29.91 16 4 C -0.47 -9.31 5.62 22.31 0.13 -9.19 16 5 C -0.03 -0.33 9.74 22.24 0.22 -0.11 16 6 C -0.12 -2.30 9.41 22.49 0.21 -2.09 16 7 C -0.02 -0.69 5.88 -20.04 -0.12 -0.81 16 8 C 0.00 0.16 5.86 -20.12 -0.12 0.04 16 9 C -0.21 -6.00 9.37 22.53 0.21 -5.79 16 10 C -0.01 -0.32 9.74 22.47 0.22 -0.11 16 11 C -0.18 -7.63 5.95 -19.54 -0.12 -7.75 16 12 C 0.30 13.88 14.36 88.33 1.27 15.14 16 13 N -0.52 -25.14 18.54 19.00 0.35 -24.79 16 14 C 0.12 5.64 5.25 -19.90 -0.10 5.54 16 15 C -0.46 -25.20 9.02 23.39 0.21 -24.99 16 16 H 0.06 3.45 7.66 -2.91 -0.02 3.42 16 17 C 0.06 2.91 5.42 85.35 0.46 3.37 16 18 N -0.82 -44.11 13.92 21.87 0.30 -43.80 16 19 Si 0.95 41.61 24.53 68.60 1.68 43.29 16 20 H -0.26 -10.71 6.05 99.48 0.60 -10.11 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.24 -10.47 6.85 99.48 0.68 -9.79 16 23 C -0.24 -10.23 6.53 22.93 0.15 -10.08 16 24 C -0.16 -5.34 9.41 22.49 0.21 -5.13 16 25 C -0.08 -2.37 9.43 22.24 0.21 -2.16 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.15 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.20 -0.09 8.06 -2.91 -0.02 -0.12 16 30 H 0.17 2.02 6.14 -2.91 -0.02 2.01 16 31 H 0.16 3.05 6.10 -2.91 -0.02 3.04 16 32 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.30 14.45 8.29 -92.71 -0.77 13.68 16 34 H 0.10 4.60 2.93 -2.91 -0.01 4.59 16 35 H 0.10 3.83 5.46 -2.91 -0.02 3.82 16 36 H 0.10 3.40 7.44 -2.91 -0.02 3.38 16 Total: -1.00 -80.75 324.29 4.29 -76.46 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.01 Total: 9.21 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 4.25 Total: -47.90 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: 0.66 Total: -68.59 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -2.52 Total: -29.91 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.68 Total: 43.29 kcal Atomic # 16 Polarization: 18.23 SS G_CDS: -0.80 Total: 17.43 kcal Total: -80.75 4.29 -76.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.840 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds