Wall clock time and date at job start Tue Mar 31 2020 10:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86804 * 119.99466 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47282 * 299.99858 * 3 2 1 6 6 H 1.48499 * 109.47271 * 60.00438 * 3 2 1 7 7 C 1.39947 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00188 * 197.65930 * 7 2 1 9 9 C 1.41063 * 120.00317 * 17.66274 * 7 2 1 10 10 C 1.41331 * 120.54593 * 23.70942 * 9 7 2 11 11 C 1.36545 * 118.42443 * 179.97438 * 10 9 7 12 12 C 1.39963 * 119.46300 * 0.02562 * 11 10 9 13 13 C 1.47908 * 119.45431 * 179.97438 * 12 11 10 14 14 C 1.41135 * 126.37541 * 0.02562 * 13 12 11 15 15 N 1.30528 * 108.10278 * 179.75805 * 14 13 12 16 16 N 1.39950 * 108.85960 * 0.38171 * 15 14 13 17 17 C 1.46508 * 125.80007 * 179.87593 * 16 15 14 18 18 C 1.50700 * 109.46972 * 304.68736 * 17 16 15 19 19 C 1.33385 * 125.20022 * 90.00330 * 18 17 16 20 20 C 1.38428 * 114.92235 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.91742 * 0.24422 * 20 19 18 22 22 S 1.75882 * 125.20257 * 269.95926 * 18 17 16 23 23 C 1.34612 * 108.39749 * 359.60813 * 16 15 14 24 24 N 1.33033 * 121.09401 * 0.25639 * 12 11 10 25 25 C 1.31308 * 121.70649 * 359.47024 * 24 12 11 26 26 H 0.97000 * 120.00446 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.79065 * 359.96374 * 10 9 7 28 28 H 1.07996 * 120.26541 * 179.97438 * 11 10 9 29 29 H 1.08001 * 125.94895 * 0.02915 * 14 13 12 30 30 H 1.08998 * 109.46784 * 184.68783 * 17 16 15 31 31 H 1.08994 * 109.47141 * 64.68702 * 17 16 15 32 32 H 1.08000 * 122.54102 * 359.97438 * 19 18 17 33 33 H 1.08000 * 122.54286 * 179.97438 * 20 19 18 34 34 H 1.08002 * 125.20727 * 179.75098 * 21 20 19 35 35 H 1.07999 * 126.30569 * 180.20769 * 23 16 15 36 36 H 1.08002 * 119.79392 * 180.28885 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7023 1.3466 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0082 -1.2119 -0.0005 8 1 3.0501 -1.2340 0.2832 9 6 1.3529 -2.4047 -0.3717 10 6 0.2054 -2.3673 -1.1959 11 6 -0.3944 -3.5479 -1.5290 12 6 0.1383 -4.7500 -1.0494 13 6 -0.5118 -6.0287 -1.4098 14 6 -1.6582 -6.1862 -2.2179 15 7 -1.9197 -7.4620 -2.3067 16 7 -0.9704 -8.1712 -1.5620 17 6 -0.9174 -9.6269 -1.4054 18 6 -2.2378 -10.1235 -0.8753 19 6 -3.2747 -10.4999 -1.6251 20 6 -4.3857 -10.9213 -0.9148 21 6 -4.2525 -10.8822 0.4118 22 16 -2.6468 -10.2963 0.8266 23 6 -0.1108 -7.2889 -1.0191 24 7 1.2164 -4.7613 -0.2701 25 6 1.8313 -3.6531 0.0734 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1879 -1.4272 -1.5536 28 1 -1.2731 -3.5539 -2.1568 29 1 -2.2188 -5.3902 -2.6853 30 1 -0.1235 -9.8883 -0.7057 31 1 -0.7168 -10.0893 -2.3718 32 1 -3.2496 -10.4776 -2.7046 33 1 -5.2930 -11.2523 -1.3981 34 1 -5.0135 -11.1686 1.1227 35 1 0.7367 -7.5246 -0.3925 36 1 2.7070 -3.6985 0.7039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242088902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:09 Heat of formation + Delta-G solvation = 135.069423 kcal Electronic energy + Delta-G solvation = -21122.827119 eV Core-core repulsion = 17892.911412 eV Total energy + Delta-G solvation = -3229.915707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.079 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60404 -38.20141 -37.90833 -34.28391 -33.66553 -30.89143 -30.63313 -29.99915 -28.52148 -26.38858 -25.04097 -23.37830 -22.04799 -21.74545 -20.05057 -19.76085 -19.37515 -17.43170 -17.35178 -16.70846 -15.77805 -15.47178 -14.71916 -14.66380 -14.35793 -14.08794 -13.63324 -13.39796 -12.99226 -12.86012 -12.63390 -12.55762 -12.26358 -12.03945 -11.89945 -11.64514 -11.55007 -11.30683 -11.06325 -10.91118 -10.63605 -10.24615 -9.80861 -9.46917 -9.04314 -8.93911 -8.60735 -8.52894 -8.25059 -8.02072 -7.10484 -6.85310 -4.44119 0.74047 1.45019 1.82605 2.13989 2.47307 2.57734 2.96002 3.00213 3.02871 3.04266 3.05925 3.70229 3.81591 4.43841 4.63258 4.65396 4.88115 5.16111 5.32664 5.37793 5.41650 5.43297 5.72217 5.76698 5.92569 6.05081 6.12860 6.27773 6.30749 6.37604 6.69610 6.85756 6.98111 7.04210 7.09492 7.27907 7.40987 7.77565 7.86329 7.95414 8.18289 8.41427 8.62980 8.71707 9.64510 9.99442 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002470 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.998158 B =11331.721516 C =11356.349963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.063 3.937 10 C -0.138 4.138 11 C -0.130 4.130 12 C 0.048 3.952 13 C -0.133 4.133 14 C 0.052 3.948 15 N -0.301 5.301 16 N -0.378 5.378 17 C 0.213 3.787 18 C -0.199 4.199 19 C -0.103 4.103 20 C -0.138 4.138 21 C -0.210 4.210 22 S 0.110 5.890 23 C 0.049 3.951 24 N -0.461 5.461 25 C -0.019 4.019 26 H 0.284 0.716 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.179 0.821 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 -16.014 -1.438 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.059 3.941 10 C -0.163 4.163 11 C -0.150 4.150 12 C -0.088 4.088 13 C -0.145 4.145 14 C -0.135 4.135 15 N -0.122 5.122 16 N -0.161 5.161 17 C 0.089 3.911 18 C -0.317 4.317 19 C -0.135 4.135 20 C -0.169 4.169 21 C -0.346 4.346 22 S 0.374 5.626 23 C -0.096 4.096 24 N -0.169 5.169 25 C -0.182 4.182 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.196 0.804 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.191 0.809 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.334 -17.408 -0.226 18.209 hybrid contribution -0.387 2.123 -1.113 2.429 sum -5.721 -15.285 -1.339 16.375 Atomic orbital electron populations 1.69815 1.07764 1.29661 1.33546 1.26018 0.94791 1.01731 0.92096 0.86191 0.81035 0.80460 0.78723 1.18164 1.19550 1.19813 1.19594 0.98243 0.91020 1.38339 0.89782 1.18557 0.92214 0.93645 0.89729 1.21319 0.98531 0.96980 0.99488 1.21177 0.99567 0.93284 1.00984 1.18093 0.96613 0.89409 1.04724 1.18986 0.98469 0.91921 1.05087 1.23887 0.96828 0.93657 0.99166 1.76974 1.12941 1.05226 1.17043 1.48170 1.22805 1.05201 1.39962 1.19854 0.92859 0.76338 1.02003 1.24503 1.01166 1.09768 0.96222 1.20138 0.91987 0.99996 1.01364 1.20180 1.00016 1.03544 0.93151 1.25676 1.00651 1.08556 0.99684 1.84393 1.08900 1.63384 1.05964 1.22774 0.96870 0.89046 1.00917 1.66936 1.07199 1.32230 1.10576 1.22375 1.02582 0.87890 1.05344 0.90514 0.85640 0.88426 0.80394 0.87901 0.88375 0.84087 0.84246 0.81912 0.80883 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.35 10.92 55.55 0.61 -18.75 16 2 C 0.07 1.74 5.17 -17.34 -0.09 1.65 16 3 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.44 -11.18 9.06 -37.87 -0.34 -11.52 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 9 C 0.06 1.64 5.59 -106.64 -0.60 1.04 16 10 C -0.14 -3.49 8.74 -39.02 -0.34 -3.83 16 11 C -0.13 -3.02 9.54 -39.55 -0.38 -3.40 16 12 C 0.05 1.13 6.76 -82.74 -0.56 0.57 16 13 C -0.13 -2.68 6.10 -104.96 -0.64 -3.32 16 14 C 0.05 0.94 11.40 -17.01 -0.19 0.75 16 15 N -0.30 -5.23 12.34 30.84 0.38 -4.85 16 16 N -0.38 -5.88 3.65 -61.94 -0.23 -6.11 16 17 C 0.21 2.40 6.98 -5.19 -0.04 2.37 16 18 C -0.20 -2.29 5.94 -36.00 -0.21 -2.51 16 19 C -0.10 -1.13 10.05 -41.21 -0.41 -1.54 16 20 C -0.14 -1.36 10.18 -41.21 -0.42 -1.78 16 21 C -0.21 -2.04 11.23 29.04 0.33 -1.71 16 22 S 0.11 1.21 23.33 -107.50 -2.51 -1.30 16 23 C 0.05 0.86 11.22 -16.46 -0.18 0.67 16 24 N -0.46 -11.21 10.04 -9.10 -0.09 -11.30 16 25 C -0.02 -0.47 10.97 -16.77 -0.18 -0.65 16 26 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 27 H 0.13 3.22 6.19 -52.49 -0.32 2.90 16 28 H 0.10 1.99 7.00 -52.49 -0.37 1.63 16 29 H 0.18 2.83 7.31 -52.49 -0.38 2.45 16 30 H 0.10 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 36 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -29.51 333.31 -9.69 -39.20 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.58 Total: 8.59 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -4.27 Total: -23.20 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.67 Total: -41.00 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.51 -9.69 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242088902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.269 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds