Wall clock time and date at job start Tue Mar 31 2020 10:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86804 * 119.99466 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47282 * 299.99858 * 3 2 1 6 6 H 1.48499 * 109.47271 * 60.00438 * 3 2 1 7 7 C 1.39947 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00188 * 197.65930 * 7 2 1 9 9 C 1.41063 * 120.00317 * 17.66274 * 7 2 1 10 10 C 1.41331 * 120.54593 * 23.70942 * 9 7 2 11 11 C 1.36545 * 118.42443 * 179.97438 * 10 9 7 12 12 C 1.39963 * 119.46300 * 0.02562 * 11 10 9 13 13 C 1.47908 * 119.45431 * 179.97438 * 12 11 10 14 14 C 1.41135 * 126.37541 * 0.02562 * 13 12 11 15 15 N 1.30528 * 108.10278 * 179.75805 * 14 13 12 16 16 N 1.39950 * 108.85960 * 0.38171 * 15 14 13 17 17 C 1.46508 * 125.80007 * 179.87593 * 16 15 14 18 18 C 1.50700 * 109.46972 * 304.68736 * 17 16 15 19 19 C 1.33385 * 125.20022 * 90.00330 * 18 17 16 20 20 C 1.38428 * 114.92235 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.91742 * 0.24422 * 20 19 18 22 22 S 1.75882 * 125.20257 * 269.95926 * 18 17 16 23 23 C 1.34612 * 108.39749 * 359.60813 * 16 15 14 24 24 N 1.33033 * 121.09401 * 0.25639 * 12 11 10 25 25 C 1.31308 * 121.70649 * 359.47024 * 24 12 11 26 26 H 0.97000 * 120.00446 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.79065 * 359.96374 * 10 9 7 28 28 H 1.07996 * 120.26541 * 179.97438 * 11 10 9 29 29 H 1.08001 * 125.94895 * 0.02915 * 14 13 12 30 30 H 1.08998 * 109.46784 * 184.68783 * 17 16 15 31 31 H 1.08994 * 109.47141 * 64.68702 * 17 16 15 32 32 H 1.08000 * 122.54102 * 359.97438 * 19 18 17 33 33 H 1.08000 * 122.54286 * 179.97438 * 20 19 18 34 34 H 1.08002 * 125.20727 * 179.75098 * 21 20 19 35 35 H 1.07999 * 126.30569 * 180.20769 * 23 16 15 36 36 H 1.08002 * 119.79392 * 180.28885 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7023 1.3466 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0082 -1.2119 -0.0005 8 1 3.0501 -1.2340 0.2832 9 6 1.3529 -2.4047 -0.3717 10 6 0.2054 -2.3673 -1.1959 11 6 -0.3944 -3.5479 -1.5290 12 6 0.1383 -4.7500 -1.0494 13 6 -0.5118 -6.0287 -1.4098 14 6 -1.6582 -6.1862 -2.2179 15 7 -1.9197 -7.4620 -2.3067 16 7 -0.9704 -8.1712 -1.5620 17 6 -0.9174 -9.6269 -1.4054 18 6 -2.2378 -10.1235 -0.8753 19 6 -3.2747 -10.4999 -1.6251 20 6 -4.3857 -10.9213 -0.9148 21 6 -4.2525 -10.8822 0.4118 22 16 -2.6468 -10.2963 0.8266 23 6 -0.1108 -7.2889 -1.0191 24 7 1.2164 -4.7613 -0.2701 25 6 1.8313 -3.6531 0.0734 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1879 -1.4272 -1.5536 28 1 -1.2731 -3.5539 -2.1568 29 1 -2.2188 -5.3902 -2.6853 30 1 -0.1235 -9.8883 -0.7057 31 1 -0.7168 -10.0893 -2.3718 32 1 -3.2496 -10.4776 -2.7046 33 1 -5.2930 -11.2523 -1.3981 34 1 -5.0135 -11.1686 1.1227 35 1 0.7367 -7.5246 -0.3925 36 1 2.7070 -3.6985 0.7039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242088902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:08 Heat of formation + Delta-G solvation = 120.197111 kcal Electronic energy + Delta-G solvation = -21123.472031 eV Core-core repulsion = 17892.911412 eV Total energy + Delta-G solvation = -3230.560619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.079 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96880 -39.96340 -38.78462 -36.03142 -34.83335 -32.62198 -32.40686 -31.18331 -30.02954 -27.56640 -26.60492 -24.37467 -23.65737 -23.47594 -21.39166 -21.28398 -20.21146 -19.25578 -18.51271 -17.83003 -17.21155 -16.63495 -16.31892 -16.11250 -15.84058 -15.56358 -15.05424 -14.48711 -14.28304 -14.14588 -13.77749 -13.68389 -13.56643 -13.51817 -13.40725 -13.22198 -13.06387 -12.74372 -12.58247 -12.21626 -11.75175 -11.72301 -11.49520 -11.22771 -10.32994 -10.23616 -10.12202 -9.89680 -9.75724 -9.43524 -8.83124 -8.60005 -6.32685 -0.08658 0.52858 0.65416 1.02860 1.06180 1.14839 1.40624 1.45974 1.54944 1.56498 2.01002 2.08307 2.20008 2.85168 3.49124 3.75339 3.83727 3.95433 4.10340 4.17255 4.20995 4.35832 4.54452 4.61087 4.65918 4.71372 4.79606 4.84156 5.07055 5.15908 5.22657 5.25566 5.31305 5.43149 5.52433 5.62026 5.91151 5.97089 6.08789 6.15984 6.53314 6.76517 6.79589 6.84558 7.76286 8.24377 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002470 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.998158 B =11331.721516 C =11356.349963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.475 4.475 8 H 0.086 0.914 9 C 0.034 3.966 10 C -0.155 4.155 11 C -0.137 4.137 12 C 0.053 3.947 13 C -0.176 4.176 14 C 0.050 3.950 15 N -0.306 5.306 16 N -0.365 5.365 17 C 0.202 3.798 18 C -0.216 4.216 19 C -0.105 4.105 20 C -0.147 4.147 21 C -0.204 4.204 22 S 0.083 5.917 23 C 0.067 3.933 24 N -0.470 5.470 25 C -0.036 4.036 26 H 0.293 0.707 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.194 0.806 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -17.210 -1.794 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.030 3.970 10 C -0.180 4.180 11 C -0.157 4.157 12 C -0.084 4.084 13 C -0.188 4.188 14 C -0.137 4.137 15 N -0.127 5.127 16 N -0.147 5.147 17 C 0.081 3.919 18 C -0.334 4.334 19 C -0.137 4.137 20 C -0.177 4.177 21 C -0.340 4.340 22 S 0.347 5.653 23 C -0.081 4.081 24 N -0.179 5.179 25 C -0.198 4.198 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.211 0.789 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.180 0.820 34 H 0.204 0.796 35 H 0.205 0.795 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.994 -18.647 -0.582 19.595 hybrid contribution -0.317 2.207 -1.020 2.452 sum -6.311 -16.440 -1.602 17.682 Atomic orbital electron populations 1.69852 1.09194 1.31084 1.33972 1.26872 0.95512 1.04836 0.91004 0.85070 0.79509 0.75674 0.78981 1.17854 1.18844 1.19030 1.19836 0.98618 0.91925 1.40026 0.89555 1.18861 0.93013 0.94510 0.90621 1.21360 0.99099 0.97361 1.00207 1.21457 1.00273 0.92804 1.01165 1.18602 0.95825 0.90896 1.03125 1.18968 1.00302 0.91557 1.08008 1.24100 0.96344 0.94402 0.98848 1.76952 1.13445 1.04927 1.17373 1.48543 1.21366 1.06643 1.38162 1.20311 0.93844 0.73731 1.04004 1.24517 1.01489 1.11047 0.96302 1.20405 0.92119 0.99231 1.01913 1.20471 1.00607 1.03374 0.93254 1.26011 1.00141 1.07592 1.00249 1.84482 1.10474 1.64042 1.06329 1.22974 0.96767 0.88770 0.99582 1.66993 1.07798 1.31895 1.11185 1.22590 1.03284 0.87972 1.05925 0.89661 0.86628 0.85895 0.78944 0.85589 0.86177 0.83347 0.81964 0.79623 0.79534 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.07 10.92 21.83 0.24 -40.84 16 2 C 0.03 1.65 5.17 85.26 0.44 2.09 16 3 Si 0.99 36.36 29.59 68.60 2.03 38.39 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.47 -24.67 9.06 23.38 0.21 -24.46 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 9 C 0.03 1.84 5.59 -21.17 -0.12 1.73 16 10 C -0.15 -8.07 8.74 22.64 0.20 -7.88 16 11 C -0.14 -6.46 9.54 22.29 0.21 -6.25 16 12 C 0.05 2.49 6.76 41.94 0.28 2.77 16 13 C -0.18 -6.95 6.10 -20.08 -0.12 -7.07 16 14 C 0.05 1.73 11.40 85.60 0.98 2.71 16 15 N -0.31 -10.03 12.34 -56.34 -0.69 -10.73 16 16 N -0.36 -10.57 3.65 -349.86 -1.28 -11.84 16 17 C 0.20 4.05 6.98 85.63 0.60 4.65 16 18 C -0.22 -4.52 5.94 24.59 0.15 -4.37 16 19 C -0.10 -2.03 10.05 21.22 0.21 -1.82 16 20 C -0.15 -2.49 10.18 21.22 0.22 -2.28 16 21 C -0.20 -3.47 11.23 66.72 0.75 -2.73 16 22 S 0.08 1.70 23.33 -56.49 -1.32 0.38 16 23 C 0.07 2.23 11.22 84.19 0.94 3.17 16 24 N -0.47 -23.10 10.04 -182.71 -1.83 -24.93 16 25 C -0.04 -1.83 10.97 85.42 0.94 -0.90 16 26 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 27 H 0.12 6.16 6.19 -2.91 -0.02 6.14 16 28 H 0.12 5.00 7.00 -2.91 -0.02 4.98 16 29 H 0.19 5.88 7.31 -2.91 -0.02 5.85 16 30 H 0.13 1.93 8.06 -2.39 -0.02 1.91 16 31 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.19 5.66 8.06 -2.91 -0.02 5.64 16 36 H 0.14 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -64.06 333.31 4.14 -59.91 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 1.11 Total: 30.28 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 5.89 Total: -40.62 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.57 Total: -88.34 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.32 Total: 0.38 kcal Total: -64.06 4.14 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242088902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.110 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds