Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86797 * 119.99666 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99648 * 3 2 1 5 5 H 1.48496 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46937 * 120.00125 * 3 2 1 7 7 C 1.38639 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.35705 * 116.99481 * 185.05552 * 9 7 2 11 11 C 1.38992 * 119.94793 * 354.45564 * 10 9 7 12 12 C 1.37838 * 120.05714 * 180.23123 * 11 10 9 13 13 C 1.39472 * 119.94074 * 359.49475 * 12 11 10 14 14 C 1.48243 * 120.05321 * 180.25287 * 13 12 11 15 15 C 1.39518 * 120.22274 * 130.25020 * 14 13 12 16 16 C 1.37972 * 120.05732 * 179.97438 * 15 14 13 17 17 C 1.38463 * 120.40611 * 359.97438 * 16 15 14 18 18 C 1.38422 * 120.14346 * 0.02562 * 17 16 15 19 19 C 1.39270 * 119.94664 * 359.77574 * 18 17 16 20 20 N 1.40004 * 119.35572 * 179.67017 * 19 18 17 21 21 C 1.35098 * 118.94187 * 16.00286 * 20 19 18 22 22 O 1.21286 * 120.15226 * 181.38949 * 21 20 19 23 23 C 1.50767 * 119.70022 * 1.40830 * 21 20 19 24 24 O 1.36018 * 120.62123 * 180.02562 * 18 17 16 25 25 C 1.39470 * 119.88824 * 0.50299 * 13 12 11 26 26 C 1.37833 * 119.94570 * 359.74841 * 25 13 12 27 27 H 0.96992 * 120.00430 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97173 * 359.95021 * 11 10 9 29 29 H 1.07995 * 120.02601 * 179.71696 * 12 11 10 30 30 H 1.07998 * 119.96992 * 359.96385 * 15 14 13 31 31 H 1.07998 * 119.80061 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.92884 * 180.02562 * 17 16 15 33 33 H 0.96997 * 120.56159 * 195.76641 * 20 19 18 34 34 H 1.09005 * 109.44719 * 208.66521 * 23 21 20 35 35 H 1.09009 * 109.44467 * 88.75434 * 23 21 20 36 36 H 1.07995 * 120.02442 * 179.73394 * 25 13 12 37 37 H 1.07993 * 119.97214 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0700 -3.5039 0.1055 11 6 3.4582 -3.4357 0.0915 12 6 4.2071 -4.5883 0.1942 13 6 3.5708 -5.8227 0.3229 14 6 4.3739 -7.0634 0.4392 15 6 4.1079 -7.9792 1.4575 16 6 4.8571 -9.1331 1.5623 17 6 5.8756 -9.3916 0.6606 18 6 6.1503 -8.4916 -0.3545 19 6 5.3978 -7.3256 -0.4724 20 7 5.6908 -6.4205 -1.4996 21 6 6.4567 -6.8311 -2.5340 22 8 6.7450 -6.0582 -3.4231 23 6 6.9510 -8.2548 -2.5785 24 8 7.1482 -8.7360 -1.2459 25 6 2.1777 -5.8885 0.3367 26 6 1.4333 -4.7335 0.2285 27 1 -0.4850 0.8399 -0.0004 28 1 3.9504 -2.4792 -0.0045 29 1 5.2856 -4.5352 0.1787 30 1 3.3150 -7.7847 2.1645 31 1 4.6474 -9.8394 2.3519 32 1 6.4570 -10.2974 0.7496 33 1 5.3468 -5.5141 -1.4713 34 1 7.8952 -8.2943 -3.1217 35 1 6.2149 -8.8789 -3.0852 36 1 1.6827 -6.8436 0.4319 37 1 0.3546 -4.7839 0.2387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -41.504664 kcal Electronic energy + Delta-G solvation = -24412.335373 eV Core-core repulsion = 20699.717217 eV Total energy + Delta-G solvation = -3712.618156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55339 -39.33619 -38.81360 -37.83599 -36.32335 -35.15429 -32.54047 -31.41786 -30.49359 -30.05011 -28.00570 -27.68660 -25.55455 -23.79155 -23.01348 -21.96180 -20.94842 -19.88104 -18.82983 -18.13476 -17.82945 -17.22063 -17.03022 -16.06717 -15.48739 -15.26865 -14.80859 -14.75593 -14.61577 -14.45099 -14.31655 -13.80395 -13.73103 -13.21918 -13.01867 -12.94438 -12.67077 -12.26413 -11.94803 -11.81033 -11.49075 -11.33402 -10.99026 -10.88485 -10.85430 -10.82154 -10.54951 -10.15926 -9.54431 -9.06251 -8.64001 -8.43458 -8.05301 -7.24145 -6.60099 -4.18032 0.93739 1.06969 1.98797 2.14309 2.20920 2.73362 3.06466 3.06890 3.10057 3.14707 3.63648 3.85481 3.87205 4.35376 4.53644 4.69943 4.85267 4.92172 4.99631 5.00905 5.10202 5.20968 5.34528 5.41087 5.53678 5.67928 5.90419 6.00110 6.06924 6.19165 6.34542 6.43699 6.49617 6.50519 6.68465 6.78953 6.87453 7.04736 7.11835 7.19063 7.25447 7.58374 7.71028 7.83910 8.84718 9.50758 10.56794 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.003422 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.252733 B = 8181.088025 C = 9181.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.167 6.167 10 C 0.159 3.841 11 C -0.229 4.229 12 C -0.068 4.068 13 C -0.167 4.167 14 C -0.006 4.006 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.123 4.123 18 C 0.076 3.924 19 C 0.089 3.911 20 N -0.653 5.653 21 C 0.486 3.514 22 O -0.516 6.516 23 C 0.051 3.949 24 O -0.305 6.305 25 C -0.050 4.050 26 C -0.189 4.189 27 H 0.273 0.727 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.421 0.579 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.932 -17.291 1.175 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.069 6.069 10 C 0.104 3.896 11 C -0.248 4.248 12 C -0.087 4.087 13 C -0.169 4.169 14 C -0.009 4.009 15 C -0.128 4.128 16 C -0.127 4.127 17 C -0.142 4.142 18 C 0.030 3.970 19 C -0.006 4.006 20 N -0.303 5.303 21 C 0.272 3.728 22 O -0.391 6.391 23 C -0.027 4.027 24 O -0.219 6.219 25 C -0.068 4.068 26 C -0.208 4.208 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.265 0.735 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.904 -16.838 0.607 19.544 hybrid contribution 0.180 1.418 -0.081 1.431 sum 10.084 -15.420 0.527 18.432 Atomic orbital electron populations 1.70022 1.06050 1.28200 1.44672 1.25336 0.95881 0.99015 0.96107 0.85750 0.78772 0.79427 0.79389 1.19309 1.20099 1.19320 1.21350 0.91939 0.80667 1.53120 0.88825 1.83962 1.34574 1.11607 1.76766 1.19483 0.90205 0.88095 0.91821 1.21099 0.93794 0.98846 1.11089 1.20755 0.98091 0.91697 0.98137 1.18045 0.92820 0.90830 1.15156 1.18350 0.93272 0.95186 0.94080 1.21178 1.00476 0.93551 0.97566 1.20892 0.95318 0.97522 0.98921 1.20436 0.99351 0.98547 0.95838 1.18493 0.90933 0.93548 0.94033 1.18049 0.98843 0.91200 0.92551 1.44017 1.50345 1.15835 1.20089 1.21553 0.78149 0.91541 0.81517 1.90810 1.56170 1.55617 1.36483 1.23174 1.05363 0.90410 0.83774 1.86234 1.40037 1.76885 1.18754 1.20637 0.91996 0.97013 0.97190 1.20182 0.99803 0.90085 1.10755 0.91668 0.85085 0.87459 0.84918 0.85032 0.84760 0.73496 0.83940 0.88430 0.86515 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.40 -10.64 9.48 30.88 0.29 -10.34 16 8 H 0.09 2.32 5.19 -52.49 -0.27 2.05 16 9 O -0.17 -4.57 9.75 0.22 0.00 -4.56 16 10 C 0.16 3.64 6.65 -39.02 -0.26 3.38 16 11 C -0.23 -4.71 9.15 -39.45 -0.36 -5.07 16 12 C -0.07 -1.19 7.76 -39.27 -0.30 -1.50 16 13 C -0.17 -2.72 5.22 -104.87 -0.55 -3.26 16 14 C -0.01 -0.09 5.48 -104.81 -0.57 -0.66 16 15 C -0.11 -1.24 9.51 -39.20 -0.37 -1.62 16 16 C -0.11 -1.01 10.02 -39.60 -0.40 -1.41 16 17 C -0.12 -1.22 9.99 -39.43 -0.39 -1.62 16 18 C 0.08 0.92 6.44 -39.13 -0.25 0.67 16 19 C 0.09 1.22 6.45 -83.24 -0.54 0.69 16 20 N -0.65 -9.47 5.21 -9.49 -0.05 -9.52 16 21 C 0.49 6.78 7.94 -10.81 -0.09 6.69 16 22 O -0.52 -8.79 17.95 5.55 0.10 -8.69 16 23 C 0.05 0.51 7.17 36.04 0.26 0.76 16 24 O -0.30 -3.46 10.45 -19.80 -0.21 -3.66 16 25 C -0.05 -0.83 9.51 -39.27 -0.37 -1.20 16 26 C -0.19 -3.72 9.98 -39.44 -0.39 -4.11 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.13 2.71 5.62 -52.49 -0.30 2.41 16 29 H 0.11 1.69 7.24 -52.49 -0.38 1.31 16 30 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.42 6.51 5.65 -40.82 -0.23 6.28 16 34 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.12 1.59 8.04 -52.49 -0.42 1.16 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -31.24 322.70 -7.22 -38.47 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.27 Total: 9.32 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -4.40 Total: -17.57 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.71 Total: -33.06 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.11 Total: -16.92 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.24 -7.22 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds