Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86797 * 119.99666 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99648 * 3 2 1 5 5 H 1.48496 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46937 * 120.00125 * 3 2 1 7 7 C 1.38639 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.35705 * 116.99481 * 185.05552 * 9 7 2 11 11 C 1.38992 * 119.94793 * 354.45564 * 10 9 7 12 12 C 1.37838 * 120.05714 * 180.23123 * 11 10 9 13 13 C 1.39472 * 119.94074 * 359.49475 * 12 11 10 14 14 C 1.48243 * 120.05321 * 180.25287 * 13 12 11 15 15 C 1.39518 * 120.22274 * 130.25020 * 14 13 12 16 16 C 1.37972 * 120.05732 * 179.97438 * 15 14 13 17 17 C 1.38463 * 120.40611 * 359.97438 * 16 15 14 18 18 C 1.38422 * 120.14346 * 0.02562 * 17 16 15 19 19 C 1.39270 * 119.94664 * 359.77574 * 18 17 16 20 20 N 1.40004 * 119.35572 * 179.67017 * 19 18 17 21 21 C 1.35098 * 118.94187 * 16.00286 * 20 19 18 22 22 O 1.21286 * 120.15226 * 181.38949 * 21 20 19 23 23 C 1.50767 * 119.70022 * 1.40830 * 21 20 19 24 24 O 1.36018 * 120.62123 * 180.02562 * 18 17 16 25 25 C 1.39470 * 119.88824 * 0.50299 * 13 12 11 26 26 C 1.37833 * 119.94570 * 359.74841 * 25 13 12 27 27 H 0.96992 * 120.00430 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97173 * 359.95021 * 11 10 9 29 29 H 1.07995 * 120.02601 * 179.71696 * 12 11 10 30 30 H 1.07998 * 119.96992 * 359.96385 * 15 14 13 31 31 H 1.07998 * 119.80061 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.92884 * 180.02562 * 17 16 15 33 33 H 0.96997 * 120.56159 * 195.76641 * 20 19 18 34 34 H 1.09005 * 109.44719 * 208.66521 * 23 21 20 35 35 H 1.09009 * 109.44467 * 88.75434 * 23 21 20 36 36 H 1.07995 * 120.02442 * 179.73394 * 25 13 12 37 37 H 1.07993 * 119.97214 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0700 -3.5039 0.1055 11 6 3.4582 -3.4357 0.0915 12 6 4.2071 -4.5883 0.1942 13 6 3.5708 -5.8227 0.3229 14 6 4.3739 -7.0634 0.4392 15 6 4.1079 -7.9792 1.4575 16 6 4.8571 -9.1331 1.5623 17 6 5.8756 -9.3916 0.6606 18 6 6.1503 -8.4916 -0.3545 19 6 5.3978 -7.3256 -0.4724 20 7 5.6908 -6.4205 -1.4996 21 6 6.4567 -6.8311 -2.5340 22 8 6.7450 -6.0582 -3.4231 23 6 6.9510 -8.2548 -2.5785 24 8 7.1482 -8.7360 -1.2459 25 6 2.1777 -5.8885 0.3367 26 6 1.4333 -4.7335 0.2285 27 1 -0.4850 0.8399 -0.0004 28 1 3.9504 -2.4792 -0.0045 29 1 5.2856 -4.5352 0.1787 30 1 3.3150 -7.7847 2.1645 31 1 4.6474 -9.8394 2.3519 32 1 6.4570 -10.2974 0.7496 33 1 5.3468 -5.5141 -1.4713 34 1 7.8952 -8.2943 -3.1217 35 1 6.2149 -8.8789 -3.0852 36 1 1.6827 -6.8436 0.4319 37 1 0.3546 -4.7839 0.2387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = -61.907720 kcal Electronic energy + Delta-G solvation = -24413.220116 eV Core-core repulsion = 20699.717217 eV Total energy + Delta-G solvation = -3713.502899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53580 -40.88191 -39.95169 -39.01876 -37.68940 -36.22828 -34.39840 -32.64612 -32.00161 -31.00298 -29.25841 -28.65756 -27.40677 -24.83408 -24.22582 -23.45827 -22.23883 -20.87375 -20.00761 -19.73865 -18.95565 -18.81150 -18.00749 -17.17461 -16.54312 -16.42078 -16.26633 -16.23063 -15.79370 -15.65777 -15.51552 -15.30924 -15.17391 -14.58086 -14.36209 -14.04236 -13.89133 -13.59113 -13.33200 -13.10228 -12.92097 -12.60731 -12.46200 -12.20327 -12.17294 -12.04716 -11.85643 -11.30970 -11.22592 -10.87180 -9.95174 -9.79819 -9.02751 -8.74859 -8.53084 -6.20986 -0.09507 0.13861 0.44610 0.74156 1.21692 1.32529 1.42365 1.48094 1.72152 2.13307 2.28272 2.62999 2.83091 2.94563 3.08291 3.39912 3.51948 3.90243 3.95001 4.00889 4.05918 4.14708 4.19646 4.38330 4.43307 4.57522 4.62705 4.73190 4.89612 4.99248 5.08047 5.10469 5.24134 5.40837 5.43823 5.50958 5.58058 5.60973 5.71560 5.83885 5.95174 6.04229 6.27151 6.61583 6.91257 7.68399 8.69092 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.003422 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.252733 B = 8181.088025 C = 9181.394542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.418 4.418 8 H 0.101 0.899 9 O -0.223 6.223 10 C 0.121 3.879 11 C -0.237 4.237 12 C -0.071 4.071 13 C -0.133 4.133 14 C -0.036 4.036 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.108 4.108 18 C 0.066 3.934 19 C 0.076 3.924 20 N -0.664 5.664 21 C 0.479 3.521 22 O -0.557 6.557 23 C 0.058 3.942 24 O -0.305 6.305 25 C -0.042 4.042 26 C -0.194 4.194 27 H 0.275 0.725 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.411 0.589 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -21.397 2.252 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.119 0.881 9 O -0.129 6.129 10 C 0.070 3.930 11 C -0.256 4.256 12 C -0.089 4.089 13 C -0.134 4.134 14 C -0.039 4.039 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.126 4.126 18 C 0.020 3.980 19 C -0.019 4.019 20 N -0.311 5.311 21 C 0.268 3.732 22 O -0.436 6.436 23 C -0.020 4.020 24 O -0.219 6.219 25 C -0.060 4.060 26 C -0.213 4.213 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.252 0.748 34 H 0.186 0.814 35 H 0.142 0.858 36 H 0.175 0.825 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.327 -21.034 1.708 24.439 hybrid contribution -0.342 2.134 -0.352 2.189 sum 11.985 -18.900 1.355 22.421 Atomic orbital electron populations 1.70158 1.07935 1.29078 1.48079 1.26544 0.96824 1.02630 0.95579 0.84692 0.77498 0.74453 0.79895 1.18424 1.19355 1.18108 1.21784 0.92539 0.81421 1.53650 0.88131 1.83933 1.35882 1.12575 1.80516 1.20024 0.91304 0.88186 0.93500 1.21148 0.93282 0.99705 1.11452 1.20949 0.98886 0.91322 0.97723 1.18434 0.93126 0.91634 1.10195 1.18267 0.94303 0.94976 0.96310 1.21406 1.00868 0.93418 0.96709 1.21316 0.93803 0.96959 0.99041 1.20909 0.98855 0.98672 0.94194 1.18764 0.90957 0.93372 0.94896 1.18226 0.99368 0.91843 0.92511 1.44176 1.50431 1.15700 1.20822 1.22377 0.77290 0.92983 0.80549 1.90787 1.57736 1.57110 1.37923 1.23387 1.07344 0.87591 0.83664 1.86242 1.39966 1.76565 1.19164 1.21044 0.92132 0.97397 0.95451 1.20464 1.00396 0.90088 1.10391 0.91625 0.86148 0.85709 0.83562 0.81162 0.81762 0.74801 0.81355 0.85845 0.82507 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 2 C -0.02 -0.97 5.49 84.83 0.47 -0.51 16 3 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.42 -24.12 9.48 67.92 0.64 -23.48 16 8 H 0.10 5.35 5.19 -2.91 -0.02 5.33 16 9 O -0.22 -13.17 9.75 -22.14 -0.22 -13.39 16 10 C 0.12 5.86 6.65 22.64 0.15 6.01 16 11 C -0.24 -10.20 9.15 22.36 0.20 -9.99 16 12 C -0.07 -2.46 7.76 22.47 0.17 -2.29 16 13 C -0.13 -4.09 5.22 -20.02 -0.10 -4.19 16 14 C -0.04 -0.88 5.48 -19.98 -0.11 -0.99 16 15 C -0.11 -1.89 9.51 22.52 0.21 -1.68 16 16 C -0.09 -1.17 10.02 22.26 0.22 -0.94 16 17 C -0.11 -1.52 9.99 22.37 0.22 -1.29 16 18 C 0.07 1.33 6.44 22.56 0.15 1.47 16 19 C 0.08 1.86 6.45 38.41 0.25 2.10 16 20 N -0.66 -18.49 5.21 -302.13 -1.57 -20.06 16 21 C 0.48 12.79 7.94 87.63 0.70 13.49 16 22 O -0.56 -19.00 17.95 -3.05 -0.05 -19.05 16 23 C 0.06 0.96 7.17 71.26 0.51 1.47 16 24 O -0.30 -5.71 10.45 -93.76 -0.98 -6.69 16 25 C -0.04 -1.33 9.51 22.47 0.21 -1.11 16 26 C -0.19 -7.80 9.98 22.36 0.22 -7.58 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 29 H 0.13 3.89 7.24 -2.91 -0.02 3.87 16 30 H 0.15 2.23 8.04 -2.91 -0.02 2.21 16 31 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.41 12.68 5.65 -92.71 -0.52 12.16 16 34 H 0.17 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.16 3.66 8.04 -2.91 -0.02 3.64 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -75.18 322.70 4.24 -70.94 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.62 Total: 28.21 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 4.12 Total: -29.51 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.28 Total: -75.22 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.25 Total: -39.13 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -75.18 4.24 -70.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.032 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds