Wall clock time and date at job start Tue Mar 31 2020 10:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36088 * 120.04906 * 2 1 4 4 C 1.40269 * 120.09314 * 179.97438 * 3 2 1 5 5 C 1.47190 * 119.91050 * 179.97438 * 4 3 2 6 6 C 1.36181 * 125.41790 * 359.95513 * 5 4 3 7 7 C 1.41562 * 107.73604 * 180.02562 * 6 5 4 8 8 C 1.40896 * 106.95936 * 0.02562 * 7 6 5 9 9 C 1.38981 * 119.54657 * 179.97438 * 8 7 6 10 10 C 1.37857 * 119.99360 * 359.97438 * 9 8 7 11 11 C 1.38828 * 120.66130 * 359.93536 * 10 9 8 12 12 C 1.37651 * 120.43891 * 0.10125 * 11 10 9 13 13 Cl 1.73595 * 120.16519 * 179.91313 * 12 11 10 14 14 N 1.37871 * 125.41651 * 179.97438 * 5 4 3 15 15 H 0.97001 * 125.60185 * 0.02562 * 14 5 4 16 16 C 1.40307 * 120.17899 * 0.26901 * 4 3 2 17 17 C 1.36063 * 120.08597 * 359.44345 * 16 4 3 18 18 C 1.41019 * 120.04479 * 179.97438 * 2 1 3 19 19 C 1.40858 * 120.08560 * 0.02562 * 18 2 1 20 20 H 1.07995 * 119.99949 * 25.75922 * 19 18 2 21 21 C 1.39939 * 119.99413 * 205.75995 * 19 18 2 22 22 N 1.30840 * 120.00534 * 15.54851 * 21 19 18 23 23 Si 1.86808 * 119.99646 * 195.55332 * 21 19 18 24 24 H 1.48498 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47025 * 119.99796 * 23 21 19 26 26 H 1.48494 * 109.47124 * 240.00040 * 23 21 19 27 27 H 1.08995 * 109.47090 * 90.00179 * 1 2 3 28 28 H 1.09003 * 109.47005 * 210.00771 * 1 2 3 29 29 H 1.09003 * 109.46646 * 329.99761 * 1 2 3 30 30 H 1.08002 * 119.94931 * 359.97438 * 3 2 1 31 31 H 1.08000 * 126.13184 * 0.02562 * 6 5 4 32 32 H 1.08010 * 120.00543 * 179.72080 * 9 8 7 33 33 H 1.07997 * 119.66826 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.78218 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.96004 * 179.70964 * 16 4 3 36 36 H 1.08004 * 120.04073 * 180.27069 * 17 16 4 37 37 H 0.97003 * 120.00037 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.1780 0.0000 4 6 3.5912 1.1790 0.0005 5 6 4.3242 2.4555 0.0000 6 6 3.7548 3.6925 -0.0019 7 6 4.7993 4.6480 -0.0025 8 6 6.0122 3.9310 -0.0014 9 6 7.2174 4.6231 -0.0021 10 6 7.2205 6.0017 -0.0044 11 6 6.0279 6.7123 -0.0074 12 6 4.8214 6.0498 -0.0060 13 17 3.3344 6.9455 -0.0074 14 7 5.6964 2.5888 0.0009 15 1 6.3347 1.8584 0.0017 16 6 4.2975 -0.0333 -0.0046 17 6 3.6236 -1.2153 0.0013 18 6 2.2131 -1.2207 0.0005 19 6 1.5116 -2.4422 0.0005 20 1 0.5124 -2.4910 -0.4063 21 6 2.1095 -3.5923 0.5278 22 7 3.1714 -3.4892 1.2851 23 14 1.3915 -5.2750 0.1501 24 1 0.1996 -5.1202 -0.7220 25 1 2.4097 -6.1030 -0.5449 26 1 0.9942 -5.9394 1.4173 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5140 29 1 -0.3633 0.8900 0.5139 30 1 1.6485 2.1133 -0.0004 31 1 2.6961 3.9063 -0.0029 32 1 8.1516 4.0809 0.0033 33 1 8.1601 6.5341 -0.0046 34 1 6.0469 7.7921 -0.0096 35 1 5.3774 -0.0283 -0.0089 36 1 4.1680 -2.1481 0.0017 37 1 3.5856 -4.2864 1.6508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245578355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:33 Heat of formation + Delta-G solvation = 47.903217 kcal Electronic energy + Delta-G solvation = -21579.433174 eV Core-core repulsion = 18311.401199 eV Total energy + Delta-G solvation = -3268.031975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01827 -38.08724 -36.89021 -35.88346 -34.00788 -31.91371 -31.71836 -30.24819 -29.12581 -27.98348 -26.20368 -25.12025 -22.51045 -21.85201 -21.32491 -19.85787 -19.43684 -17.64335 -17.45896 -15.95263 -15.67590 -15.29532 -14.39591 -14.35405 -14.21516 -14.12698 -13.79080 -13.21212 -12.85084 -12.76291 -12.55594 -12.39009 -11.98881 -11.86033 -11.65391 -11.34173 -11.26182 -11.14876 -11.10019 -10.99812 -10.76026 -10.65598 -10.50453 -9.80246 -9.60674 -9.50907 -9.30550 -8.25943 -7.68899 -7.62775 -7.09451 -6.84982 -4.57542 1.07744 1.72850 2.28834 2.43192 2.85094 2.89534 2.92065 2.96622 3.41398 3.54691 3.70267 4.00404 4.44690 4.97743 5.10712 5.27252 5.42206 5.45662 5.53856 5.82192 5.87399 5.98437 6.06648 6.13600 6.27787 6.33151 6.50683 6.53745 6.56327 6.63727 6.69987 6.80214 6.88222 6.98744 7.04958 7.20992 7.36198 7.42077 7.60893 7.80247 7.87182 7.92847 8.01536 8.32760 8.57643 8.68696 9.84205 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.003041 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.770889 B = 9204.468355 C =10189.265603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.200 4.200 3 C -0.041 4.041 4 C -0.200 4.200 5 C 0.207 3.793 6 C -0.247 4.247 7 C -0.069 4.069 8 C 0.084 3.916 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.007 4.007 13 Cl -0.081 7.081 14 N -0.592 5.592 15 H 0.416 0.584 16 C -0.080 4.080 17 C -0.167 4.167 18 C 0.125 3.875 19 C -0.434 4.434 20 H 0.088 0.912 21 C 0.071 3.929 22 N -0.775 5.775 23 Si 0.913 3.087 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 9.297 -1.612 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.201 4.201 3 C -0.060 4.060 4 C -0.203 4.203 5 C 0.099 3.901 6 C -0.270 4.270 7 C -0.075 4.075 8 C -0.023 4.023 9 C -0.138 4.138 10 C -0.138 4.138 11 C -0.155 4.155 12 C -0.034 4.034 13 Cl -0.053 7.053 14 N -0.195 5.195 15 H 0.253 0.747 16 C -0.099 4.099 17 C -0.186 4.186 18 C 0.122 3.878 19 C -0.462 4.462 20 H 0.106 0.894 21 C -0.149 4.149 22 N -0.399 5.399 23 Si 0.736 3.264 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.197 1.197 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.801 9.112 -1.457 10.402 hybrid contribution 0.129 -1.062 -0.004 1.070 sum 4.930 8.050 -1.461 9.552 Atomic orbital electron populations 1.20426 0.93077 1.00879 0.99949 1.19414 0.94707 0.92796 1.13229 1.20145 0.91913 0.96534 0.97404 1.17404 0.92436 0.88220 1.22203 1.19225 0.80494 0.94691 0.95704 1.20458 0.98157 0.89496 1.18880 1.17872 0.93750 0.91063 1.04806 1.18087 0.94504 0.83552 1.06177 1.20025 0.94721 0.94019 1.04997 1.20520 0.97244 0.92703 1.03323 1.20618 0.90485 0.99662 1.04735 1.20291 0.86698 0.89888 1.06566 1.98326 1.35088 1.74899 1.96951 1.42064 1.07004 1.05300 1.65134 0.74667 1.20355 0.96679 0.92685 1.00227 1.20952 0.94543 0.96568 1.06510 1.17634 0.91855 0.91810 0.86540 1.19782 1.01869 0.92363 1.32199 0.89434 1.26083 0.94208 1.02016 0.92602 1.69825 1.16999 1.32244 1.20788 0.86167 0.80281 0.80436 0.79480 1.18038 1.19436 1.19658 0.93756 0.91970 0.93982 0.88387 0.84157 0.86328 0.85543 0.85705 0.89900 0.86081 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.39 36.01 0.34 -1.32 16 2 C -0.20 -4.48 5.90 -104.34 -0.62 -5.09 16 3 C -0.04 -0.87 9.11 -39.59 -0.36 -1.23 16 4 C -0.20 -4.23 5.89 -104.72 -0.62 -4.85 16 5 C 0.21 3.97 6.87 -82.25 -0.56 3.41 16 6 C -0.25 -4.61 10.05 -39.06 -0.39 -5.00 16 7 C -0.07 -1.20 6.04 -106.89 -0.65 -1.85 16 8 C 0.08 1.37 7.25 -83.86 -0.61 0.76 16 9 C -0.12 -1.55 10.06 -39.45 -0.40 -1.95 16 10 C -0.12 -1.43 10.02 -39.50 -0.40 -1.82 16 11 C -0.13 -1.77 9.80 -39.58 -0.39 -2.16 16 12 C -0.01 -0.12 6.36 -39.06 -0.25 -0.36 16 13 Cl -0.08 -1.17 28.86 -51.86 -1.50 -2.67 16 14 N -0.59 -9.82 6.05 -7.27 -0.04 -9.86 16 15 H 0.42 5.91 7.97 -40.82 -0.33 5.58 16 16 C -0.08 -1.74 9.62 -39.59 -0.38 -2.12 16 17 C -0.17 -3.96 8.61 -39.30 -0.34 -4.30 16 18 C 0.12 3.03 5.57 -106.79 -0.59 2.43 16 19 C -0.43 -10.32 8.10 -37.95 -0.31 -10.62 16 20 H 0.09 1.98 6.85 -52.49 -0.36 1.63 16 21 C 0.07 1.61 5.17 -17.34 -0.09 1.53 16 22 N -0.78 -18.17 10.88 55.55 0.60 -17.56 16 23 Si 0.91 16.88 29.59 -169.99 -5.03 11.85 16 24 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 25 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 26 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.21 6.76 -51.93 -0.35 0.85 16 29 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.10 1.90 6.88 -52.49 -0.36 1.54 16 31 H 0.14 2.53 7.14 -52.49 -0.38 2.16 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.08 1.56 7.07 -52.49 -0.37 1.19 16 36 H 0.12 2.95 6.14 -52.48 -0.32 2.63 16 37 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -25.52 328.02 -11.34 -36.85 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.71 Total: 11.01 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -6.61 Total: -34.56 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: 0.56 Total: -27.43 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.52 -11.34 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245578355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.758 kcal (2) G-P(sol) polarization free energy of solvation -25.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds