Wall clock time and date at job start Tue Mar 31 2020 10:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36088 * 120.04906 * 2 1 4 4 C 1.40269 * 120.09314 * 179.97438 * 3 2 1 5 5 C 1.47190 * 119.91050 * 179.97438 * 4 3 2 6 6 C 1.36181 * 125.41790 * 359.95513 * 5 4 3 7 7 C 1.41562 * 107.73604 * 180.02562 * 6 5 4 8 8 C 1.40896 * 106.95936 * 0.02562 * 7 6 5 9 9 C 1.38981 * 119.54657 * 179.97438 * 8 7 6 10 10 C 1.37857 * 119.99360 * 359.97438 * 9 8 7 11 11 C 1.38828 * 120.66130 * 359.93536 * 10 9 8 12 12 C 1.37651 * 120.43891 * 0.10125 * 11 10 9 13 13 Cl 1.73595 * 120.16519 * 179.91313 * 12 11 10 14 14 N 1.37871 * 125.41651 * 179.97438 * 5 4 3 15 15 H 0.97001 * 125.60185 * 0.02562 * 14 5 4 16 16 C 1.40307 * 120.17899 * 0.26901 * 4 3 2 17 17 C 1.36063 * 120.08597 * 359.44345 * 16 4 3 18 18 C 1.41019 * 120.04479 * 179.97438 * 2 1 3 19 19 C 1.40858 * 120.08560 * 0.02562 * 18 2 1 20 20 H 1.07995 * 119.99949 * 25.75922 * 19 18 2 21 21 C 1.39939 * 119.99413 * 205.75995 * 19 18 2 22 22 N 1.30840 * 120.00534 * 15.54851 * 21 19 18 23 23 Si 1.86808 * 119.99646 * 195.55332 * 21 19 18 24 24 H 1.48498 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47025 * 119.99796 * 23 21 19 26 26 H 1.48494 * 109.47124 * 240.00040 * 23 21 19 27 27 H 1.08995 * 109.47090 * 90.00179 * 1 2 3 28 28 H 1.09003 * 109.47005 * 210.00771 * 1 2 3 29 29 H 1.09003 * 109.46646 * 329.99761 * 1 2 3 30 30 H 1.08002 * 119.94931 * 359.97438 * 3 2 1 31 31 H 1.08000 * 126.13184 * 0.02562 * 6 5 4 32 32 H 1.08010 * 120.00543 * 179.72080 * 9 8 7 33 33 H 1.07997 * 119.66826 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.78218 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.96004 * 179.70964 * 16 4 3 36 36 H 1.08004 * 120.04073 * 180.27069 * 17 16 4 37 37 H 0.97003 * 120.00037 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.1780 0.0000 4 6 3.5912 1.1790 0.0005 5 6 4.3242 2.4555 0.0000 6 6 3.7548 3.6925 -0.0019 7 6 4.7993 4.6480 -0.0025 8 6 6.0122 3.9310 -0.0014 9 6 7.2174 4.6231 -0.0021 10 6 7.2205 6.0017 -0.0044 11 6 6.0279 6.7123 -0.0074 12 6 4.8214 6.0498 -0.0060 13 17 3.3344 6.9455 -0.0074 14 7 5.6964 2.5888 0.0009 15 1 6.3347 1.8584 0.0017 16 6 4.2975 -0.0333 -0.0046 17 6 3.6236 -1.2153 0.0013 18 6 2.2131 -1.2207 0.0005 19 6 1.5116 -2.4422 0.0005 20 1 0.5124 -2.4910 -0.4063 21 6 2.1095 -3.5923 0.5278 22 7 3.1714 -3.4892 1.2851 23 14 1.3915 -5.2750 0.1501 24 1 0.1996 -5.1202 -0.7220 25 1 2.4097 -6.1030 -0.5449 26 1 0.9942 -5.9394 1.4173 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5140 29 1 -0.3633 0.8900 0.5139 30 1 1.6485 2.1133 -0.0004 31 1 2.6961 3.9063 -0.0029 32 1 8.1516 4.0809 0.0033 33 1 8.1601 6.5341 -0.0046 34 1 6.0469 7.7921 -0.0096 35 1 5.3774 -0.0283 -0.0089 36 1 4.1680 -2.1481 0.0017 37 1 3.5856 -4.2864 1.6508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245578355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:32 Heat of formation + Delta-G solvation = 38.540017 kcal Electronic energy + Delta-G solvation = -21579.839193 eV Core-core repulsion = 18311.401199 eV Total energy + Delta-G solvation = -3268.437994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28864 -39.70633 -38.09661 -37.02885 -35.65541 -33.53460 -32.99390 -31.82911 -30.30906 -29.42455 -27.77093 -26.69677 -23.93450 -23.09013 -22.75350 -21.34999 -20.93916 -19.16452 -18.88213 -17.26757 -17.20792 -16.53598 -15.80598 -15.65118 -15.62909 -15.37243 -15.30425 -14.68434 -14.36836 -14.28039 -13.92597 -13.60936 -13.58166 -13.24906 -12.98735 -12.90553 -12.81276 -12.64149 -12.52957 -12.17625 -12.11987 -11.87928 -11.78668 -11.45616 -11.27953 -11.13553 -10.59619 -9.72126 -9.34178 -8.95347 -8.73513 -8.32255 -6.32269 -0.15800 0.56244 0.81453 1.14988 1.29856 1.38348 1.41509 1.53461 2.03461 2.15659 2.17139 2.76751 2.86574 3.68962 3.85097 3.98674 4.18477 4.25964 4.29499 4.38217 4.44081 4.59404 4.70716 4.82047 4.89426 4.92441 5.03223 5.05346 5.10622 5.21488 5.33403 5.38285 5.45022 5.49626 5.66664 5.72728 5.76453 5.91980 6.06609 6.09124 6.26405 6.30114 6.59762 6.64856 6.85034 6.96543 8.21792 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.003041 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.770889 B = 9204.468355 C =10189.265603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.214 4.214 3 C -0.056 4.056 4 C -0.192 4.192 5 C 0.176 3.824 6 C -0.244 4.244 7 C -0.104 4.104 8 C 0.077 3.923 9 C -0.120 4.120 10 C -0.099 4.099 11 C -0.131 4.131 12 C -0.022 4.022 13 Cl -0.079 7.079 14 N -0.586 5.586 15 H 0.424 0.576 16 C -0.087 4.087 17 C -0.190 4.190 18 C 0.093 3.907 19 C -0.467 4.467 20 H 0.088 0.912 21 C 0.034 3.966 22 N -0.811 5.811 23 Si 0.982 3.018 24 H -0.255 1.255 25 H -0.265 1.265 26 H -0.266 1.266 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 11.511 -1.852 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.215 4.215 3 C -0.075 4.075 4 C -0.194 4.194 5 C 0.067 3.933 6 C -0.267 4.267 7 C -0.109 4.109 8 C -0.031 4.031 9 C -0.141 4.141 10 C -0.118 4.118 11 C -0.151 4.151 12 C -0.049 4.049 13 Cl -0.050 7.050 14 N -0.190 5.190 15 H 0.263 0.737 16 C -0.106 4.106 17 C -0.209 4.209 18 C 0.090 3.910 19 C -0.495 4.495 20 H 0.106 0.894 21 C -0.183 4.183 22 N -0.436 5.436 23 Si 0.803 3.197 24 H -0.178 1.178 25 H -0.190 1.190 26 H -0.191 1.191 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.441 11.336 -1.699 13.148 hybrid contribution -0.180 -1.304 0.066 1.318 sum 6.261 10.032 -1.632 11.937 Atomic orbital electron populations 1.20408 0.91167 1.01391 1.00847 1.19817 0.96416 0.92594 1.12664 1.20397 0.92393 0.96938 0.97733 1.17660 0.92750 0.89090 1.19940 1.18971 0.81803 0.93841 0.98669 1.20585 0.98521 0.90001 1.17613 1.18055 0.93823 0.92061 1.06981 1.18496 0.95403 0.83100 1.06112 1.20477 0.94746 0.94777 1.04056 1.21095 0.98553 0.92300 0.99855 1.21072 0.89891 1.01223 1.02913 1.20553 0.87846 0.89456 1.07012 1.98325 1.35202 1.74558 1.96958 1.41986 1.06162 1.06090 1.64745 0.73671 1.20572 0.97898 0.92269 0.99820 1.20950 0.94836 0.96777 1.08344 1.17980 0.92383 0.92920 0.87693 1.19951 1.02333 0.93249 1.34004 0.89400 1.26855 0.94404 1.05160 0.91867 1.69874 1.18409 1.33406 1.21916 0.85138 0.79462 0.75845 0.79266 1.17797 1.18980 1.19124 0.92564 0.92713 0.92096 0.86766 0.84509 0.83368 0.81298 0.83009 0.87707 0.87545 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.17 9.39 71.24 0.67 -2.50 16 2 C -0.21 -9.87 5.90 -19.68 -0.12 -9.98 16 3 C -0.06 -2.43 9.11 22.26 0.20 -2.23 16 4 C -0.19 -8.29 5.89 -19.93 -0.12 -8.41 16 5 C 0.18 6.75 6.87 40.07 0.28 7.03 16 6 C -0.24 -9.03 10.05 22.61 0.23 -8.80 16 7 C -0.10 -3.46 6.04 -21.33 -0.13 -3.59 16 8 C 0.08 2.32 7.25 39.02 0.28 2.60 16 9 C -0.12 -2.69 10.06 22.36 0.22 -2.47 16 10 C -0.10 -1.87 10.02 22.32 0.22 -1.65 16 11 C -0.13 -2.90 9.80 22.27 0.22 -2.68 16 12 C -0.02 -0.62 6.36 22.61 0.14 -0.48 16 13 Cl -0.08 -2.15 28.86 -2.72 -0.08 -2.23 16 14 N -0.59 -18.87 6.05 -176.90 -1.07 -19.94 16 15 H 0.42 11.63 7.97 -92.71 -0.74 10.90 16 16 C -0.09 -3.87 9.62 22.27 0.21 -3.65 16 17 C -0.19 -9.49 8.61 22.45 0.19 -9.29 16 18 C 0.09 4.73 5.57 -21.27 -0.12 4.62 16 19 C -0.47 -23.23 8.10 23.32 0.19 -23.04 16 20 H 0.09 4.17 6.85 -2.91 -0.02 4.15 16 21 C 0.03 1.59 5.17 85.25 0.44 2.03 16 22 N -0.81 -39.73 10.88 21.83 0.24 -39.49 16 23 Si 0.98 35.46 29.59 68.60 2.03 37.49 16 24 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 25 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 26 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.18 6.76 -2.39 -0.02 2.16 16 29 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 30 H 0.11 4.48 6.88 -2.91 -0.02 4.46 16 31 H 0.14 4.98 7.14 -2.91 -0.02 4.95 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.10 4.02 7.07 -2.91 -0.02 4.00 16 36 H 0.11 5.53 6.14 -2.91 -0.02 5.51 16 37 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 Total: -1.00 -57.65 328.02 4.53 -53.12 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.39 Total: 33.55 kcal Atomic # 6 Polarization: -65.53 SS G_CDS: 3.02 Total: -62.50 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.83 Total: -59.43 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -57.65 4.53 -53.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245578355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.659 kcal (2) G-P(sol) polarization free energy of solvation -57.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds