Wall clock time and date at job start Tue Mar 31 2020 11:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86802 * 120.00132 * 2 1 4 4 H 1.48505 * 109.47099 * 85.29918 * 3 2 1 5 5 H 1.48503 * 109.47141 * 205.30149 * 3 2 1 6 6 H 1.48500 * 109.46938 * 325.29958 * 3 2 1 7 7 C 1.39894 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99927 * 189.80163 * 7 2 1 9 9 C 1.40984 * 119.99894 * 9.79750 * 7 2 1 10 10 C 1.40742 * 120.31592 * 24.81213 * 9 7 2 11 11 C 1.36415 * 119.96134 * 180.02562 * 10 9 7 12 12 C 1.38951 * 120.61383 * 359.97438 * 11 10 9 13 13 C 1.38073 * 120.64013 * 0.02562 * 12 11 10 14 14 C 1.38874 * 120.02079 * 359.67444 * 13 12 11 15 15 N 1.38539 * 120.30649 * 180.29523 * 14 13 12 16 16 C 1.40498 * 120.00005 * 352.13520 * 15 14 13 17 17 C 1.40316 * 126.09310 * 315.68773 * 16 15 14 18 18 N 1.30814 * 108.33811 * 179.87705 * 17 16 15 19 19 N 1.40069 * 108.39773 * 0.38483 * 18 17 16 20 20 C 1.46501 * 126.04431 * 179.73357 * 19 18 17 21 21 C 1.52995 * 109.47358 * 305.02302 * 20 19 18 22 22 F 1.39901 * 109.47120 * 59.99852 * 21 20 19 23 23 F 1.39899 * 109.47483 * 180.02562 * 21 20 19 24 24 F 1.39898 * 109.46962 * 299.99953 * 21 20 19 25 25 C 1.35839 * 107.90585 * 359.75127 * 19 18 17 26 26 H 0.97000 * 119.99782 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.02011 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.69346 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.67780 * 180.02562 * 12 11 10 30 30 H 1.08008 * 119.99317 * 179.97438 * 13 12 11 31 31 H 0.97004 * 119.99969 * 172.13345 * 15 14 13 32 32 H 1.07998 * 125.82525 * 0.02562 * 17 16 15 33 33 H 1.09005 * 109.47220 * 65.02317 * 20 19 18 34 34 H 1.09002 * 109.46848 * 185.02153 * 20 19 18 35 35 H 1.08002 * 126.22715 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3912 2.1038 1.3954 5 1 3.5868 1.4135 -0.5984 6 1 1.4937 2.6219 -0.7970 7 6 2.0085 -1.2115 0.0005 8 1 3.0767 -1.2183 0.1598 9 6 1.3190 -2.4236 -0.2067 10 6 0.0985 -2.4359 -0.9076 11 6 -0.5628 -3.6128 -1.1035 12 6 -0.0429 -4.8061 -0.6172 13 6 1.1523 -4.8231 0.0739 14 6 1.8508 -3.6412 0.2830 15 7 3.0537 -3.6523 0.9703 16 6 3.4914 -4.8288 1.6013 17 6 2.7048 -5.6905 2.3808 18 7 3.4597 -6.6755 2.7945 19 7 4.7560 -6.4756 2.3030 20 6 5.9108 -7.3460 2.5380 21 6 6.1112 -7.5320 4.0433 22 9 4.9669 -8.1156 4.5976 23 9 7.2143 -8.3626 4.2678 24 9 6.3361 -6.2873 4.6412 25 6 4.7531 -5.3318 1.5702 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3141 -1.5140 -1.2902 28 1 -1.4992 -3.6171 -1.6416 29 1 -0.5790 -5.7292 -0.7813 30 1 1.5466 -5.7566 0.4477 31 1 3.5937 -2.8478 1.0158 32 1 1.6549 -5.5635 2.5997 33 1 5.7357 -8.3158 2.0722 34 1 6.8023 -6.8912 2.1062 35 1 5.5997 -4.9005 1.0568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248666245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:17 Heat of formation + Delta-G solvation = -42.310831 kcal Electronic energy + Delta-G solvation = -24836.056676 eV Core-core repulsion = 20613.839573 eV Total energy + Delta-G solvation = -4222.217104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.29896 -47.87191 -47.70871 -41.00393 -37.94625 -34.92565 -33.57790 -33.31718 -29.99928 -29.61389 -28.41272 -26.83230 -25.08045 -23.95180 -21.61355 -21.16183 -20.41269 -19.78912 -18.78551 -18.69669 -17.84085 -17.23604 -16.68875 -16.24798 -15.29486 -14.91957 -14.84536 -14.60125 -14.53336 -14.20986 -14.13366 -14.01394 -13.90216 -13.86904 -13.15001 -12.91048 -12.75260 -12.55179 -12.45513 -12.09181 -11.88509 -11.34563 -11.04316 -11.03661 -10.73405 -10.42739 -9.76919 -9.65126 -9.52454 -9.27872 -9.20491 -8.04214 -7.36974 -6.68099 -6.27737 -4.21794 1.76583 2.14365 2.52506 2.78434 2.90057 3.07725 3.10532 3.22038 3.37504 3.43727 3.66080 3.94418 3.95002 4.33294 4.56024 4.68541 4.71737 4.97190 5.30291 5.70388 5.73328 6.02954 6.25256 6.46027 6.52907 6.68956 6.88643 7.00510 7.18285 7.26113 7.48153 7.69556 7.77707 7.82560 8.16597 8.17684 8.43577 8.68563 8.76108 8.94564 9.05797 10.26709 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.003383 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.191346 B = 8273.749113 C = 9360.733910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.460 4.460 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.200 4.200 13 C -0.160 4.160 14 C 0.090 3.910 15 N -0.659 5.659 16 C 0.066 3.934 17 C 0.051 3.949 18 N -0.278 5.278 19 N -0.397 5.397 20 C 0.111 3.889 21 C 0.441 3.559 22 F -0.165 7.165 23 F -0.182 7.182 24 F -0.178 7.178 25 C -0.007 4.007 26 H 0.277 0.723 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.405 0.595 32 H 0.189 0.811 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.573 -9.993 3.785 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.491 4.491 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.161 4.161 11 C -0.159 4.159 12 C -0.221 4.221 13 C -0.182 4.182 14 C -0.007 4.007 15 N -0.286 5.286 16 C -0.041 4.041 17 C -0.139 4.139 18 N -0.098 5.098 19 N -0.185 5.185 20 C -0.015 4.015 21 C 0.386 3.614 22 F -0.146 7.146 23 F -0.163 7.163 24 F -0.160 7.160 25 C -0.150 4.150 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.242 0.758 32 H 0.205 0.795 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.484 -11.044 4.506 16.558 hybrid contribution 0.558 1.793 -0.121 1.882 sum 12.042 -9.251 4.385 15.806 Atomic orbital electron populations 1.69804 1.07247 1.28576 1.37496 1.25769 0.94799 1.00899 0.92769 0.86311 0.80417 0.81130 0.78870 1.19787 1.18737 1.20204 1.19148 0.95025 0.90548 1.44421 0.91167 1.17245 0.93268 0.90031 0.92576 1.21111 0.97086 0.97221 1.00633 1.20389 0.99215 0.93518 1.02753 1.20190 0.98094 0.96410 1.07357 1.20232 0.97467 0.95035 1.05493 1.17819 0.88556 0.94491 0.99866 1.40857 1.22422 1.08666 1.56623 1.17599 0.92079 0.93466 1.01002 1.24202 1.00836 0.93183 0.95719 1.77381 0.87663 1.23256 1.21456 1.47563 1.06955 1.19776 1.44175 1.22545 0.89493 0.99060 0.90371 1.20799 0.74291 0.74264 0.92068 1.93277 1.49810 1.84119 1.87400 1.93202 1.54655 1.72711 1.95773 1.93225 1.94435 1.42265 1.86067 1.22134 1.00744 0.89222 1.02923 0.91167 0.85205 0.89712 0.89609 0.88833 0.75809 0.79469 0.85775 0.84637 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.32 10.53 55.55 0.58 -19.73 16 2 C 0.07 1.77 5.30 -17.33 -0.09 1.68 16 3 Si 0.91 18.21 29.57 -169.99 -5.03 13.18 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -11.44 8.60 -37.92 -0.33 -11.77 16 8 H 0.07 1.63 6.55 -52.48 -0.34 1.28 16 9 C 0.07 1.85 5.62 -106.63 -0.60 1.25 16 10 C -0.14 -3.56 8.64 -39.29 -0.34 -3.90 16 11 C -0.14 -3.24 9.96 -39.97 -0.40 -3.64 16 12 C -0.20 -4.44 10.03 -39.38 -0.40 -4.84 16 13 C -0.16 -3.51 8.62 -39.41 -0.34 -3.85 16 14 C 0.09 2.05 6.60 -83.31 -0.55 1.50 16 15 N -0.66 -12.88 5.51 -8.22 -0.05 -12.92 16 16 C 0.07 1.13 6.04 -83.95 -0.51 0.62 16 17 C 0.05 0.87 9.64 -17.20 -0.17 0.71 16 18 N -0.28 -4.46 11.49 30.71 0.35 -4.10 16 19 N -0.40 -5.19 3.63 -60.99 -0.22 -5.41 16 20 C 0.11 0.94 6.51 -4.04 -0.03 0.91 16 21 C 0.44 4.57 3.28 37.15 0.12 4.69 16 22 F -0.16 -2.13 16.28 2.25 0.04 -2.10 16 23 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 24 F -0.18 -2.19 17.23 2.25 0.04 -2.15 16 25 C -0.01 -0.09 11.52 -16.63 -0.19 -0.28 16 26 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.13 3.43 5.86 -52.48 -0.31 3.12 16 28 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.90 5.61 -52.48 -0.29 1.61 16 31 H 0.40 7.65 7.04 -40.82 -0.29 7.36 16 32 H 0.19 3.17 7.64 -52.49 -0.40 2.77 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.14 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -28.94 314.65 -6.19 -35.12 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -2.88 Total: 11.93 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -3.81 Total: -16.92 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.67 Total: -42.16 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.89 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.94 -6.19 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248666245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.188 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds