Wall clock time and date at job start Tue Mar 31 2020 10:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81401 * 109.47391 * 2 1 4 4 O 1.42098 * 110.53916 * 291.62434 * 3 2 1 5 5 O 1.42098 * 110.54206 * 68.37419 * 3 2 1 6 6 C 1.76200 * 104.45100 * 179.97438 * 3 2 1 7 7 C 1.37974 * 120.07405 * 114.99659 * 6 3 2 8 8 C 1.38335 * 120.14432 * 179.97438 * 7 6 3 9 9 C 1.38383 * 120.29594 * 0.02562 * 8 7 6 10 10 C 1.37937 * 120.14260 * 359.97438 * 9 8 7 11 11 C 1.39561 * 120.06939 * 294.72254 * 6 3 2 12 12 C 1.47839 * 120.14925 * 0.02562 * 11 6 3 13 13 O 1.21559 * 119.99759 * 303.37682 * 12 11 6 14 14 N 1.34771 * 120.00155 * 123.36963 * 12 11 6 15 15 C 1.46503 * 120.00235 * 4.45222 * 14 12 11 16 16 C 1.46502 * 119.99910 * 184.45346 * 14 12 11 17 17 C 1.50695 * 109.47393 * 90.00067 * 16 14 12 18 18 H 1.08001 * 119.99781 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00393 * 179.97438 * 17 16 14 20 20 N 1.31519 * 119.99604 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00328 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47541 * 89.99752 * 21 19 17 23 23 H 1.48497 * 109.46989 * 210.00160 * 21 19 17 24 24 H 1.48505 * 109.46851 * 329.99504 * 21 19 17 25 25 H 1.09002 * 109.47056 * 300.00129 * 1 2 3 26 26 H 1.09005 * 109.46918 * 60.00119 * 1 2 3 27 27 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46918 * 119.99881 * 2 1 3 29 29 H 1.09002 * 109.47056 * 239.99870 * 2 1 3 30 30 H 1.08001 * 119.92833 * 0.02562 * 7 6 3 31 31 H 1.08000 * 119.85731 * 180.02562 * 8 7 6 32 32 H 1.07993 * 119.93378 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.07567 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.46978 * 84.75747 * 15 14 12 35 35 H 1.08992 * 109.47182 * 204.76303 * 15 14 12 36 36 H 1.08998 * 109.47033 * 324.76293 * 15 14 12 37 37 H 1.09004 * 109.46922 * 210.00083 * 16 14 12 38 38 H 1.08999 * 109.47060 * 329.99797 * 16 14 12 39 39 H 0.97001 * 119.99820 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3437 -1.2370 5 8 1.8386 2.3438 1.2370 6 6 3.8900 1.5560 0.0008 7 6 4.6233 1.9979 -1.0812 8 6 6.0015 1.8779 -1.0819 9 6 6.6537 1.3143 0.0006 10 6 5.9324 0.8685 1.0886 11 6 4.5418 0.9917 1.0982 12 6 3.7628 0.5211 2.2632 13 8 3.0219 1.2868 2.8483 14 7 3.8740 -0.7569 2.6765 15 6 4.8383 -1.6533 2.0339 16 6 3.0307 -1.2497 3.7684 17 6 1.7513 -1.8091 3.2017 18 1 1.5834 -1.7991 2.1349 19 6 0.7955 -2.3348 4.0451 20 7 1.0007 -2.3484 5.3441 21 14 -0.7900 -3.0290 3.3426 22 1 -0.6110 -4.4737 3.0496 23 1 -1.8861 -2.8561 4.3295 24 1 -1.1336 -2.3087 2.0902 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 4.1204 2.4391 -1.9290 31 1 6.5710 2.2258 -1.9310 32 1 7.7298 1.2231 -0.0063 33 1 6.4426 0.4291 1.9330 34 1 5.8174 -1.5247 2.4953 35 1 4.5117 -2.6860 2.1561 36 1 4.9031 -1.4161 0.9720 37 1 3.5602 -2.0323 4.3117 38 1 2.7991 -0.4290 4.4473 39 1 0.3282 -2.7179 5.9374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070870607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:19 Heat of formation + Delta-G solvation = -61.912034 kcal Electronic energy + Delta-G solvation = -25117.977221 eV Core-core repulsion = 21539.918086 eV Total energy + Delta-G solvation = -3578.059135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.06243 -38.12586 -36.63276 -35.52211 -34.95846 -32.88167 -32.75796 -31.44600 -31.25809 -27.87532 -26.08977 -24.21650 -24.08500 -22.78828 -22.34264 -19.49133 -18.56388 -17.54263 -16.76890 -16.66209 -16.17520 -15.96519 -15.31881 -15.06892 -14.93903 -14.59828 -14.23233 -14.04551 -13.82793 -13.11374 -13.00413 -12.84738 -12.46479 -12.32228 -12.20770 -12.20112 -11.99369 -11.67473 -11.63839 -11.43264 -11.30999 -11.23489 -10.95525 -10.66493 -10.60843 -10.22088 -10.15271 -9.68635 -9.43672 -9.18042 -8.93682 -8.51959 -7.78396 -6.13515 -4.19744 0.30702 0.72276 1.05935 3.03146 3.13343 3.22732 3.30204 3.31701 3.41448 3.71090 4.04756 4.34775 4.48341 4.69334 4.76123 4.77690 4.92854 5.03077 5.14581 5.21941 5.36090 5.48065 5.49589 5.55233 5.70572 5.79646 5.86215 5.96525 6.04331 6.08415 6.10299 6.16920 6.27194 6.64966 6.91511 7.33638 7.39083 7.81534 8.10089 8.17481 8.71472 8.87811 9.45646 10.94554 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.006396 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.551943 B = 4376.393267 C = 5462.050050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.612 4.612 3 S 2.474 3.526 4 O -0.953 6.953 5 O -0.886 6.886 6 C -0.625 4.625 7 C -0.029 4.029 8 C -0.134 4.134 9 C -0.073 4.073 10 C -0.114 4.114 11 C -0.016 4.016 12 C 0.498 3.502 13 O -0.468 6.468 14 N -0.594 5.594 15 C 0.077 3.923 16 C 0.242 3.758 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 2.463 -13.389 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.742 4.742 3 S 2.652 3.348 4 O -0.951 6.951 5 O -0.883 6.883 6 C -0.711 4.711 7 C -0.048 4.048 8 C -0.152 4.152 9 C -0.091 4.091 10 C -0.133 4.133 11 C -0.020 4.020 12 C 0.281 3.719 13 O -0.340 6.340 14 N -0.328 5.328 15 C -0.067 4.067 16 C 0.123 3.877 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.194 1.194 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.172 0.828 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.938 3.578 -12.846 16.054 hybrid contribution 0.024 -1.289 -0.331 1.331 sum 8.963 2.289 -13.177 16.100 Atomic orbital electron populations 1.21471 0.90076 1.05325 1.03036 1.30303 1.07700 1.23394 1.12835 1.06280 0.74563 0.78657 0.75284 1.93504 1.83243 1.72752 1.45570 1.93783 1.81719 1.71091 1.41704 1.30809 1.26976 1.12459 1.00840 1.20959 0.94385 0.93521 0.95919 1.21377 0.94451 1.00356 0.99062 1.21374 1.00200 0.94693 0.92860 1.21441 0.92671 1.00066 0.99145 1.20021 0.94994 0.94181 0.92836 1.18587 0.84003 0.83850 0.85460 1.91077 1.35753 1.53098 1.54109 1.48196 1.38668 1.08899 1.37001 1.21798 0.92107 0.95974 0.96824 1.19435 0.88585 0.95548 0.84108 1.21412 1.02116 1.40249 0.93564 0.92039 1.24902 0.98322 0.95762 0.94736 1.69920 1.35301 1.45159 1.02326 0.86614 0.83151 0.79201 0.79232 1.20615 1.20925 1.19401 0.90404 0.91602 0.89683 0.82793 0.85426 0.83520 0.84941 0.84912 0.84525 0.93390 0.90139 0.92506 0.94506 0.93200 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.92 37.16 0.37 -1.86 16 2 C -0.61 -9.99 6.51 37.16 0.24 -9.75 16 3 S 2.47 44.27 4.62 -107.50 -0.50 43.78 16 4 O -0.95 -17.01 16.74 -57.54 -0.96 -17.98 16 5 O -0.89 -19.96 14.50 -67.21 -0.97 -20.93 16 6 C -0.63 -10.10 5.61 -39.18 -0.22 -10.32 16 7 C -0.03 -0.38 9.49 -39.64 -0.38 -0.75 16 8 C -0.13 -1.38 10.04 -39.49 -0.40 -1.78 16 9 C -0.07 -0.74 10.03 -39.64 -0.40 -1.14 16 10 C -0.11 -1.48 8.05 -39.18 -0.32 -1.79 16 11 C -0.02 -0.27 4.62 -104.97 -0.48 -0.75 16 12 C 0.50 10.37 4.94 -12.33 -0.06 10.31 16 13 O -0.47 -11.91 13.28 -19.05 -0.25 -12.16 16 14 N -0.59 -11.91 2.74 -184.08 -0.50 -12.42 16 15 C 0.08 1.14 9.21 59.85 0.55 1.69 16 16 C 0.24 5.96 5.17 -5.19 -0.03 5.94 16 17 C -0.53 -14.00 9.26 -34.44 -0.32 -14.32 16 18 H 0.06 1.53 5.70 -52.49 -0.30 1.23 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 21 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.15 2.92 4.31 -51.92 -0.22 2.70 16 29 H 0.13 1.58 8.14 -51.92 -0.42 1.15 16 30 H 0.15 1.69 7.21 -52.49 -0.38 1.31 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.54 7.06 -52.49 -0.37 1.17 16 34 H 0.05 0.59 7.42 -51.93 -0.39 0.20 16 35 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 36 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 37 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.05 1.41 7.36 -51.93 -0.38 1.02 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -34.98 333.03 -8.88 -43.86 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.89 Total: 2.74 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -1.53 Total: -22.85 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.23 Total: -37.05 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.19 Total: -51.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 44.27 SS G_CDS: -0.50 Total: 43.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.98 -8.88 -43.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.051 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds