Wall clock time and date at job start Tue Mar 31 2020 09:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46502 * 110.01490 * 58.60536 * 5 4 3 7 7 C 1.34772 * 120.00305 * 300.70688 * 6 5 4 8 8 O 1.21284 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00454 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47335 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99815 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00054 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99621 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00248 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99500 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47294 * 60.00332 * 15 13 11 17 17 H 1.48508 * 109.46859 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47071 * 299.99815 * 15 13 11 19 19 C 1.54268 * 110.03266 * 297.16946 * 5 4 3 20 20 C 1.54888 * 104.19449 * 217.10119 * 19 5 4 21 21 C 1.54890 * 102.74929 * 37.94319 * 20 19 5 22 22 C 1.53869 * 110.03790 * 179.97438 * 5 4 3 23 23 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 24 24 O 1.21305 * 110.24918 * 359.70797 * 23 4 3 25 25 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 28 28 H 0.96999 * 119.99617 * 120.70051 * 6 5 4 29 29 H 1.09006 * 109.46864 * 299.99801 * 9 7 6 30 30 H 1.09000 * 109.46689 * 59.99355 * 9 7 6 31 31 H 0.96999 * 120.00015 * 179.97438 * 14 13 11 32 32 H 1.08997 * 110.48444 * 335.78016 * 19 5 4 33 33 H 1.08998 * 110.48721 * 98.42587 * 19 5 4 34 34 H 1.08997 * 110.75547 * 279.62710 * 20 19 5 35 35 H 1.09001 * 110.75755 * 156.25624 * 20 19 5 36 36 H 1.09004 * 110.48433 * 203.38267 * 21 20 19 37 37 H 1.08996 * 110.60219 * 80.78580 * 21 20 19 38 38 H 1.08998 * 110.03782 * 238.57356 * 22 5 4 39 39 H 1.09001 * 110.03024 * 359.95399 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 4.8444 2.2638 1.1747 7 6 3.8677 3.1726 1.3658 8 8 2.9614 3.2662 0.5652 9 6 3.9015 4.0725 2.5742 10 16 2.4653 5.1736 2.5468 11 6 2.7503 6.0850 4.0277 12 1 3.6181 5.8721 4.6342 13 6 1.8600 7.0772 4.4141 14 7 0.8026 7.3370 3.6746 15 14 2.1625 8.0438 5.9837 16 1 3.4659 8.7490 5.8873 17 1 1.0744 9.0371 6.1708 18 1 2.1873 7.1136 7.1409 19 6 4.8975 2.2303 -1.2897 20 6 6.4025 2.2114 -1.6555 21 6 6.8254 0.7674 -1.2883 22 6 6.0370 0.4586 0.0018 23 7 3.4646 -0.7242 0.0015 24 8 2.3029 -1.0736 0.0073 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 5.5693 2.1891 1.8148 29 1 3.8776 3.4659 3.4796 30 1 4.8150 4.6668 2.5590 31 1 0.1802 8.0302 3.9449 32 1 4.3063 1.7736 -2.0834 33 1 4.5632 3.2507 -1.1025 34 1 6.9539 2.9388 -1.0597 35 1 6.5436 2.3963 -2.7204 36 1 7.8981 0.7202 -1.1001 37 1 6.5472 0.0730 -2.0810 38 1 6.6569 0.6591 0.8757 39 1 5.7154 -0.5829 0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041795091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:47 Heat of formation + Delta-G solvation = 39.622144 kcal Electronic energy + Delta-G solvation = -23862.724044 eV Core-core repulsion = 20321.360513 eV Total energy + Delta-G solvation = -3541.363532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.43501 -40.05571 -37.54644 -35.47566 -33.54571 -33.10540 -32.40909 -29.70925 -29.30929 -28.52202 -27.31129 -25.43960 -23.83186 -22.54046 -21.43106 -20.17899 -19.42135 -18.05081 -17.77872 -17.62684 -16.35412 -15.96883 -15.66746 -14.91990 -14.78683 -14.60087 -14.38663 -13.94594 -13.48277 -13.43707 -13.19373 -12.97094 -12.65071 -12.51967 -12.17033 -11.89921 -11.64912 -11.41724 -11.35604 -11.18589 -11.07546 -11.02639 -11.00851 -10.76258 -10.73021 -10.62005 -9.81440 -9.75623 -9.10096 -9.04228 -8.92331 -8.19696 -6.45920 -6.19659 -3.89191 1.24849 2.37155 2.93675 3.09859 3.20848 3.24387 3.28472 3.33157 3.66431 3.73980 3.95271 4.22891 4.43151 4.47991 4.81011 5.01938 5.15329 5.16906 5.22408 5.24670 5.26298 5.33042 5.39828 5.47534 5.60555 5.65528 5.68672 5.75975 5.85517 5.89995 5.93935 5.97584 6.14887 6.17827 6.21936 6.24172 6.69778 7.61077 7.75490 8.32802 8.36906 8.76009 9.25662 10.87628 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.003886 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.377085 B = 7204.203140 C = 8321.340315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.160 3.840 3 N -0.419 5.419 4 C 0.168 3.832 5 C 0.271 3.729 6 N -0.731 5.731 7 C 0.517 3.483 8 O -0.466 6.466 9 C -0.151 4.151 10 S -0.054 6.054 11 C -0.537 4.537 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.868 5.868 15 Si 0.917 3.083 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.127 4.127 23 N -0.389 5.389 24 O 0.066 5.934 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.400 0.600 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.268 0.732 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -16.327 -9.032 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 N -0.151 5.151 4 C -0.106 4.106 5 C 0.182 3.818 6 N -0.388 5.388 7 C 0.302 3.698 8 O -0.335 6.335 9 C -0.302 4.302 10 S 0.172 5.828 11 C -0.685 4.685 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.503 5.503 15 Si 0.743 3.257 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.165 4.165 23 N -0.098 5.098 24 O 0.007 5.993 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.944 -16.110 -10.390 20.389 hybrid contribution 1.345 0.366 2.442 2.812 sum 8.289 -15.744 -7.948 19.487 Atomic orbital electron populations 1.20359 0.80460 1.05887 1.05086 1.29202 0.99251 0.80626 0.97022 1.72516 0.99435 1.26541 1.16647 1.26067 0.95784 0.87906 1.00841 1.18893 0.86749 0.87931 0.88227 1.46256 1.28815 1.37764 1.25984 1.20361 0.81472 0.80343 0.87620 1.90820 1.32431 1.66072 1.44172 1.23529 1.07378 1.01459 0.97830 1.85356 1.25327 1.39224 1.32843 1.22850 1.13043 1.22856 1.09765 0.91126 1.24962 0.94468 0.96337 0.97680 1.70003 1.11825 1.30985 1.37515 0.86257 0.78048 0.79314 0.82075 1.19948 1.20804 1.19993 1.22665 0.96493 1.01743 0.94624 1.22540 0.95536 0.96596 1.01508 1.22353 0.99688 0.97155 0.96637 1.22496 0.94440 0.99993 0.99576 1.74521 0.97728 1.15704 1.21851 1.85232 1.11502 1.36337 1.66268 0.88397 0.87301 0.88932 0.76524 0.89809 0.89481 0.92179 0.91116 0.88989 0.90891 0.90993 0.90967 0.91322 0.90206 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.16 2.22 8.51 -13.05 -0.11 2.10 16 3 N -0.42 -7.34 8.69 -9.86 -0.09 -7.43 16 4 C 0.17 2.69 6.30 -156.37 -0.99 1.70 16 5 C 0.27 3.74 0.91 -131.85 -0.12 3.62 16 6 N -0.73 -10.63 5.13 -47.64 -0.24 -10.88 16 7 C 0.52 9.85 6.98 -10.99 -0.08 9.77 16 8 O -0.47 -10.32 11.66 5.55 0.06 -10.26 16 9 C -0.15 -3.12 6.16 36.01 0.22 -2.89 16 10 S -0.05 -1.47 20.57 -107.50 -2.21 -3.68 16 11 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 14 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 15 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.12 -1.57 5.59 -25.07 -0.14 -1.71 16 20 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 21 C -0.12 -1.06 6.83 -25.04 -0.17 -1.23 16 22 C -0.13 -1.33 6.23 -25.59 -0.16 -1.49 16 23 N -0.39 -5.85 10.68 30.90 0.33 -5.52 16 24 O 0.07 0.91 11.31 18.10 0.20 1.12 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.40 4.60 8.07 -40.82 -0.33 4.27 16 29 H 0.08 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 33 H 0.09 1.50 6.53 -51.93 -0.34 1.16 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.70 7.44 -51.93 -0.39 0.31 16 39 H 0.09 1.00 6.60 -51.93 -0.34 0.65 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -35.71 337.93 -7.43 -43.14 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.15 Total: 2.15 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.14 Total: -4.75 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.73 Total: -49.27 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.27 Total: -9.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.71 -7.43 -43.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041795091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.761 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds