Wall clock time and date at job start Tue Mar 31 2020 09:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46502 * 110.01490 * 58.60536 * 5 4 3 7 7 C 1.34772 * 120.00305 * 300.70688 * 6 5 4 8 8 O 1.21284 * 120.00044 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00454 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47335 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99815 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00054 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99621 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00248 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99500 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47294 * 60.00332 * 15 13 11 17 17 H 1.48508 * 109.46859 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47071 * 299.99815 * 15 13 11 19 19 C 1.54268 * 110.03266 * 297.16946 * 5 4 3 20 20 C 1.54888 * 104.19449 * 217.10119 * 19 5 4 21 21 C 1.54890 * 102.74929 * 37.94319 * 20 19 5 22 22 C 1.53869 * 110.03790 * 179.97438 * 5 4 3 23 23 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 24 24 O 1.21305 * 110.24918 * 359.70797 * 23 4 3 25 25 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 28 28 H 0.96999 * 119.99617 * 120.70051 * 6 5 4 29 29 H 1.09006 * 109.46864 * 299.99801 * 9 7 6 30 30 H 1.09000 * 109.46689 * 59.99355 * 9 7 6 31 31 H 0.96999 * 120.00015 * 179.97438 * 14 13 11 32 32 H 1.08997 * 110.48444 * 335.78016 * 19 5 4 33 33 H 1.08998 * 110.48721 * 98.42587 * 19 5 4 34 34 H 1.08997 * 110.75547 * 279.62710 * 20 19 5 35 35 H 1.09001 * 110.75755 * 156.25624 * 20 19 5 36 36 H 1.09004 * 110.48433 * 203.38267 * 21 20 19 37 37 H 1.08996 * 110.60219 * 80.78580 * 21 20 19 38 38 H 1.08998 * 110.03782 * 238.57356 * 22 5 4 39 39 H 1.09001 * 110.03024 * 359.95399 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 4.8444 2.2638 1.1747 7 6 3.8677 3.1726 1.3658 8 8 2.9614 3.2662 0.5652 9 6 3.9015 4.0725 2.5742 10 16 2.4653 5.1736 2.5468 11 6 2.7503 6.0850 4.0277 12 1 3.6181 5.8721 4.6342 13 6 1.8600 7.0772 4.4141 14 7 0.8026 7.3370 3.6746 15 14 2.1625 8.0438 5.9837 16 1 3.4659 8.7490 5.8873 17 1 1.0744 9.0371 6.1708 18 1 2.1873 7.1136 7.1409 19 6 4.8975 2.2303 -1.2897 20 6 6.4025 2.2114 -1.6555 21 6 6.8254 0.7674 -1.2883 22 6 6.0370 0.4586 0.0018 23 7 3.4646 -0.7242 0.0015 24 8 2.3029 -1.0736 0.0073 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 5.5693 2.1891 1.8148 29 1 3.8776 3.4659 3.4796 30 1 4.8150 4.6668 2.5590 31 1 0.1802 8.0302 3.9449 32 1 4.3063 1.7736 -2.0834 33 1 4.5632 3.2507 -1.1025 34 1 6.9539 2.9388 -1.0597 35 1 6.5436 2.3963 -2.7204 36 1 7.8981 0.7202 -1.1001 37 1 6.5472 0.0730 -2.0810 38 1 6.6569 0.6591 0.8757 39 1 5.7154 -0.5829 0.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041795091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:46 Heat of formation + Delta-G solvation = 13.840925 kcal Electronic energy + Delta-G solvation = -23863.842002 eV Core-core repulsion = 20321.360513 eV Total energy + Delta-G solvation = -3542.481489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.56479 -41.28663 -38.81051 -36.60092 -34.69802 -34.57119 -34.27312 -31.14541 -30.23957 -29.46115 -28.53054 -27.60192 -24.94584 -23.56484 -22.61440 -21.19155 -20.62862 -19.77590 -19.16697 -18.77040 -17.73101 -17.26540 -16.87521 -16.79271 -16.08240 -15.99985 -15.70967 -15.32362 -14.69941 -14.49518 -14.26665 -14.18111 -14.06732 -13.77006 -13.25471 -13.16112 -13.02201 -12.91157 -12.84130 -12.60122 -12.33586 -12.32018 -12.11793 -11.97711 -11.82628 -11.69343 -11.52466 -11.12644 -10.86809 -10.62566 -10.25805 -10.23591 -8.63835 -8.33985 -6.11025 0.14168 1.16406 1.31573 1.43057 1.47687 1.58249 1.71228 1.93089 2.25841 2.30783 2.61099 2.92267 2.99820 3.34047 3.52657 3.53573 3.92674 4.01980 4.16082 4.28256 4.33461 4.36899 4.42866 4.49001 4.54108 4.60304 4.63645 4.69625 4.80190 4.94632 4.99018 5.08792 5.10492 5.19308 5.20635 5.36948 5.41376 5.50258 6.19661 6.50559 7.07167 7.21025 7.34432 8.74829 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.003886 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.377085 B = 7204.203140 C = 8321.340315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.473 5.473 4 C 0.154 3.846 5 C 0.264 3.736 6 N -0.711 5.711 7 C 0.519 3.481 8 O -0.501 6.501 9 C -0.128 4.128 10 S -0.136 6.136 11 C -0.551 4.551 12 H 0.079 0.921 13 C 0.017 3.983 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.121 4.121 23 N -0.393 5.393 24 O 0.070 5.930 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.416 0.584 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.271 0.729 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -17.434 -8.154 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 N -0.206 5.206 4 C -0.120 4.120 5 C 0.176 3.824 6 N -0.368 5.368 7 C 0.304 3.696 8 O -0.373 6.373 9 C -0.279 4.279 10 S 0.091 5.909 11 C -0.699 4.699 12 H 0.097 0.903 13 C -0.188 4.188 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.159 4.159 23 N -0.102 5.102 24 O 0.011 5.989 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.144 0.856 28 H 0.255 0.745 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.992 -17.252 -9.511 21.655 hybrid contribution 0.690 0.605 2.092 2.285 sum 9.682 -16.646 -7.419 20.637 Atomic orbital electron populations 1.20636 0.77368 1.06734 1.06861 1.30004 1.00638 0.79843 0.94888 1.72515 1.00743 1.28480 1.18859 1.26434 0.96159 0.88357 1.01060 1.19241 0.87600 0.88123 0.87471 1.45975 1.27887 1.36409 1.26577 1.20092 0.81996 0.80814 0.86720 1.90820 1.34105 1.67220 1.45125 1.23359 1.04524 1.00673 0.99377 1.85505 1.30194 1.41643 1.33571 1.23187 1.13511 1.23258 1.09920 0.90307 1.26069 0.93926 0.97335 1.01492 1.70165 1.12972 1.31791 1.39701 0.85053 0.78366 0.77693 0.77185 1.18687 1.20233 1.18823 1.22594 0.99022 0.99464 0.94420 1.22530 0.92558 0.97848 1.02458 1.22347 1.00974 0.95919 0.95668 1.22529 0.93213 0.98563 1.01587 1.74486 0.98270 1.15294 1.22131 1.85205 1.11335 1.36212 1.66146 0.85996 0.88725 0.85618 0.74527 0.88538 0.87572 0.91980 0.92385 0.92371 0.90282 0.89753 0.88184 0.91091 0.87948 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.51 71.24 0.75 -0.25 16 2 C 0.17 4.61 8.51 88.38 0.75 5.36 16 3 N -0.47 -17.01 8.69 -303.17 -2.63 -19.65 16 4 C 0.15 4.93 6.30 138.46 0.87 5.81 16 5 C 0.26 7.10 0.91 3.58 0.00 7.11 16 6 N -0.71 -20.04 5.13 -423.03 -2.17 -22.21 16 7 C 0.52 19.96 6.98 87.66 0.61 20.57 16 8 O -0.50 -23.08 11.66 -3.04 -0.04 -23.12 16 9 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 10 S -0.14 -7.63 20.57 -56.49 -1.16 -8.79 16 11 C -0.55 -31.82 9.50 67.95 0.65 -31.17 16 12 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 13 C 0.02 0.96 5.49 84.86 0.47 1.43 16 14 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 15 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 C -0.12 -3.15 5.59 31.67 0.18 -2.98 16 20 C -0.12 -2.11 6.91 31.88 0.22 -1.89 16 21 C -0.11 -1.63 6.83 31.69 0.22 -1.41 16 22 C -0.12 -2.24 6.23 31.33 0.20 -2.04 16 23 N -0.39 -11.62 10.68 -60.29 -0.64 -12.26 16 24 O 0.07 1.91 11.31 74.82 0.85 2.76 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.42 8.68 8.07 -92.71 -0.75 7.94 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.06 1.69 7.85 -2.39 -0.02 1.67 16 33 H 0.06 1.98 6.53 -2.39 -0.02 1.96 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.43 7.44 -2.39 -0.02 1.41 16 39 H 0.08 1.68 6.60 -2.39 -0.02 1.67 16 Total: -1.00 -80.82 337.93 2.20 -78.63 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.34 Total: 18.83 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.35 Total: -4.30 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -5.16 Total: -109.84 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.81 Total: -20.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -80.82 2.20 -78.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041795091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.466 kcal (2) G-P(sol) polarization free energy of solvation -80.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds