Wall clock time and date at job start Tue Mar 31 2020 10:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 6 6 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 7 7 C 1.34773 * 119.99910 * 84.99768 * 6 4 2 8 8 O 1.21277 * 120.00157 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99928 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.47331 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00167 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99830 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99988 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99648 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47053 * 60.00666 * 15 13 11 17 17 H 1.48507 * 109.46995 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47655 * 300.00403 * 15 13 11 19 19 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 20 20 C 1.38244 * 119.97361 * 79.72439 * 19 4 2 21 21 C 1.38201 * 120.02533 * 179.72682 * 20 19 4 22 22 C 1.38461 * 119.97175 * 0.52204 * 21 20 19 23 23 F 1.35103 * 120.02119 * 179.72834 * 22 21 20 24 24 C 1.38454 * 119.94761 * 359.75396 * 22 21 20 25 25 C 1.38198 * 119.97874 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 0.97003 * 119.99995 * 265.00643 * 6 4 2 34 34 H 1.09008 * 109.47127 * 300.00173 * 9 7 6 35 35 H 1.08994 * 109.47297 * 60.00002 * 9 7 6 36 36 H 0.97002 * 119.99611 * 180.02562 * 14 13 11 37 37 H 1.08005 * 119.98781 * 359.97438 * 20 19 4 38 38 H 1.07996 * 120.01275 * 180.29821 * 21 20 19 39 39 H 1.08001 * 120.01079 * 179.97438 * 24 22 21 40 40 H 1.07995 * 119.98818 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -1.7489 1.2492 6 7 1.5517 -0.0308 2.4454 7 6 0.3297 -0.3165 2.9369 8 8 -0.3655 -1.1457 2.3892 9 6 -0.1728 0.3942 4.1670 10 16 -1.8318 -0.2042 4.5743 11 6 -2.1633 0.7650 6.0079 12 1 -1.4254 1.4665 6.3680 13 6 -3.3730 0.6269 6.6744 14 7 -4.2726 -0.2276 6.2352 15 14 -3.7242 1.6540 8.1947 16 1 -3.6719 3.0954 7.8412 17 1 -5.0745 1.3214 8.7157 18 1 -2.7058 1.3623 9.2353 19 6 3.5470 -0.7219 1.2489 20 6 4.2382 0.4052 1.6529 21 6 5.6202 0.4039 1.6584 22 6 6.3125 -0.7231 1.2488 23 9 7.6636 -0.7235 1.2486 24 6 5.6192 -1.8493 0.8391 25 6 4.2372 -1.8477 0.8397 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 2.1078 0.6323 2.8837 34 1 0.4997 0.1957 5.0016 35 1 -0.2096 1.4669 3.9773 36 1 -5.1181 -0.3238 6.7008 37 1 3.6979 1.2857 1.9680 38 1 6.1599 1.2828 1.9785 39 1 6.1582 -2.7288 0.5190 40 1 3.6962 -2.7259 0.5198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047904290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:13 Heat of formation + Delta-G solvation = -66.898085 kcal Electronic energy + Delta-G solvation = -23006.894527 eV Core-core repulsion = 19440.991970 eV Total energy + Delta-G solvation = -3565.902557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.18141 -40.53577 -38.83050 -36.22225 -33.03325 -32.43888 -31.59275 -31.07323 -29.10877 -27.09540 -25.90133 -25.41026 -23.40761 -22.01080 -20.75195 -19.57716 -18.20000 -17.78724 -16.85617 -16.62425 -16.00488 -15.91417 -15.70687 -15.26076 -14.81350 -14.32876 -14.15610 -14.08549 -13.86134 -13.77128 -13.32299 -13.16494 -12.87495 -12.52711 -12.44907 -12.22909 -11.89615 -11.63290 -11.32466 -11.21436 -11.05632 -11.04659 -10.82754 -10.76731 -10.73082 -9.83155 -9.42907 -9.41362 -9.07196 -8.97054 -8.76589 -8.25374 -6.50787 -6.22669 -3.93091 0.76683 0.87964 2.98686 3.07152 3.22166 3.22807 3.27509 3.32913 3.71486 3.93100 4.19684 4.30306 4.37403 4.54596 4.81378 4.91358 4.93659 5.01385 5.09426 5.12595 5.18244 5.46895 5.54845 5.58056 5.62596 5.71790 5.73892 5.77908 5.86597 5.87023 5.91573 5.99492 6.10974 6.12823 6.14910 6.28613 6.52972 6.61102 6.65116 7.58278 7.67042 8.33935 8.59902 9.22737 10.84651 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002908 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.198567 B = 9626.424758 C =10260.516097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.153 4.153 4 C 0.191 3.809 5 H 0.099 0.901 6 N -0.731 5.731 7 C 0.534 3.466 8 O -0.510 6.510 9 C -0.155 4.155 10 S -0.057 6.057 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.094 4.094 20 C -0.083 4.083 21 C -0.151 4.151 22 C 0.094 3.906 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.078 4.078 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.269 0.731 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.820 1.312 -12.498 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.211 4.211 4 C 0.086 3.914 5 H 0.117 0.883 6 N -0.386 5.386 7 C 0.321 3.679 8 O -0.384 6.384 9 C -0.306 4.306 10 S 0.170 5.830 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.170 4.170 22 C 0.075 3.925 23 F -0.120 7.120 24 C -0.170 4.170 25 C -0.097 4.097 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 18.502 -0.163 -13.381 22.834 hybrid contribution 1.187 1.988 1.850 2.964 sum 19.690 1.825 -11.531 22.891 Atomic orbital electron populations 1.21893 0.93376 1.03008 1.01572 1.21489 0.97246 0.96442 0.96739 1.22005 1.00833 0.96128 1.02094 1.19814 0.87772 0.98280 0.85504 0.88329 1.46110 1.18482 1.44426 1.29589 1.20212 0.80442 0.82455 0.84808 1.90708 1.55406 1.32711 1.59544 1.23548 1.06407 1.03236 0.97359 1.85366 1.07707 1.54541 1.35421 1.22831 1.05099 1.26931 1.13655 0.91020 1.24982 0.95061 0.95590 0.97892 1.70003 1.07080 1.33686 1.39521 0.86236 0.77625 0.80090 0.81627 1.19948 1.20812 1.19937 1.20052 0.95521 0.94059 0.99822 1.20904 0.93009 0.98137 0.98086 1.21134 0.94872 0.98031 1.02985 1.17750 0.76815 0.95749 1.02162 1.91503 1.29145 1.97040 1.94349 1.21136 0.94876 0.97942 1.02998 1.20908 0.92998 0.97948 0.97803 0.93572 0.91942 0.91634 0.90686 0.92383 0.92367 0.92700 0.76950 0.89322 0.89350 0.92125 0.84774 0.84622 0.84610 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.72 37.16 0.29 -1.60 16 2 C -0.10 -1.04 2.79 -90.62 -0.25 -1.29 16 3 C -0.15 -1.40 7.94 37.15 0.30 -1.11 16 4 C 0.19 2.09 2.28 -69.08 -0.16 1.93 16 5 H 0.10 1.23 7.44 -51.93 -0.39 0.85 16 6 N -0.73 -9.01 4.15 -54.93 -0.23 -9.24 16 7 C 0.53 9.22 6.20 -10.99 -0.07 9.15 16 8 O -0.51 -10.50 12.99 5.56 0.07 -10.43 16 9 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 11 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 15 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.09 -0.85 4.71 -104.62 -0.49 -1.34 16 20 C -0.08 -0.68 6.83 -39.59 -0.27 -0.95 16 21 C -0.15 -1.24 10.03 -39.51 -0.40 -1.64 16 22 C 0.09 0.87 7.30 -39.42 -0.29 0.58 16 23 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 24 C -0.15 -1.25 10.03 -39.52 -0.40 -1.64 16 25 C -0.08 -0.65 9.67 -39.59 -0.38 -1.04 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.99 5.78 -51.93 -0.30 0.69 16 28 H 0.06 0.97 7.53 -51.93 -0.39 0.58 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 31 H 0.06 0.47 5.58 -51.93 -0.29 0.18 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 3.93 6.89 -40.82 -0.28 3.65 16 34 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.13 0.91 6.07 -52.48 -0.32 0.59 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.94 8.03 -52.49 -0.42 0.52 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -32.67 343.57 -8.43 -41.10 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.29 Total: 2.02 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.70 Total: -14.53 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.51 Total: -34.43 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.67 -8.43 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.802 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds