Wall clock time and date at job start Tue Mar 31 2020 10:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.50700 * 109.46875 * 179.97438 * 3 2 1 5 5 C 1.33535 * 125.97096 * 90.00292 * 4 3 2 6 6 N 1.31904 * 114.56328 * 179.74754 * 5 4 3 7 7 C 1.29675 * 116.93008 * 0.51859 * 6 5 4 8 8 N 1.38746 * 124.94559 * 179.77032 * 7 6 5 9 9 C 1.34776 * 120.00467 * 359.69633 * 8 7 6 10 10 O 1.21385 * 119.99570 * 0.02562 * 9 8 7 11 11 C 1.49308 * 120.00454 * 180.02562 * 9 8 7 12 12 O 1.21364 * 119.99818 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99872 * 180.02562 * 11 9 8 14 14 C 1.46497 * 120.00015 * 179.97438 * 13 11 9 15 15 H 1.09003 * 109.46733 * 325.00143 * 14 13 11 16 16 C 1.53000 * 109.47145 * 84.99707 * 14 13 11 17 17 C 1.50694 * 109.47115 * 204.99781 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 S 1.70975 * 110.11211 * 359.50400 * 7 6 5 26 26 H 1.09000 * 109.46982 * 300.00120 * 1 2 3 27 27 H 1.08995 * 109.46787 * 59.99781 * 1 2 3 28 28 H 1.08993 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46982 * 239.99880 * 2 1 3 30 30 H 1.09004 * 109.46547 * 120.00175 * 2 1 3 31 31 H 1.09006 * 109.46860 * 60.00279 * 3 2 1 32 32 H 1.09000 * 109.47090 * 300.00229 * 3 2 1 33 33 H 1.08003 * 122.71338 * 0.02562 * 5 4 3 34 34 H 0.97005 * 120.00010 * 179.69457 * 8 7 6 35 35 H 0.97005 * 120.00104 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47156 * 59.99824 * 16 14 13 37 37 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 38 38 H 1.09007 * 109.47356 * 300.00099 * 16 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.3319 1.4422 -1.0798 6 7 5.6248 1.4474 -0.8183 7 6 5.9713 1.4415 0.4313 8 7 7.2796 1.4410 0.8932 9 6 8.3037 1.4408 0.0170 10 8 8.0814 1.4415 -1.1763 11 6 9.7116 1.4397 0.5140 12 8 9.9339 1.4395 1.7072 13 7 10.7356 1.4399 -0.3623 14 6 12.1170 1.4394 0.1254 15 1 12.1794 2.0284 1.0405 16 6 12.5558 0.0022 0.4131 17 6 13.0195 2.0402 -0.9213 18 1 12.6056 2.3873 -1.8565 19 6 14.3739 2.1458 -0.6854 20 7 14.8781 1.7227 0.4532 21 14 15.4926 2.8899 -1.9832 22 1 15.9853 1.8182 -2.8855 23 1 14.7350 3.8931 -2.7737 24 1 16.6470 3.5499 -1.3221 25 16 4.5813 1.4419 1.4268 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9397 1.4425 -2.0861 34 1 7.4573 1.4409 1.8468 35 1 10.5579 1.4405 -1.3159 36 1 12.4933 -0.5868 -0.5020 37 1 13.5834 0.0018 0.7763 38 1 11.9030 -0.4324 1.1702 39 1 15.8309 1.7966 0.6189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190810945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:19 Heat of formation + Delta-G solvation = -29.093407 kcal Electronic energy + Delta-G solvation = -22347.310304 eV Core-core repulsion = 18802.967043 eV Total energy + Delta-G solvation = -3544.343261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80481 -39.52350 -38.04811 -35.97158 -35.26423 -34.50314 -32.44628 -30.55251 -29.21899 -27.06553 -25.41731 -25.24973 -23.76080 -22.14930 -21.44821 -20.10616 -19.60058 -19.10085 -17.59992 -16.87884 -16.26118 -15.94954 -15.73623 -15.18126 -15.11589 -14.88876 -14.67893 -14.28333 -13.95362 -13.66893 -13.35208 -13.14133 -12.74640 -12.51571 -11.99559 -11.84387 -11.73286 -11.60341 -11.40534 -11.16915 -11.01666 -11.01083 -10.84373 -10.82285 -10.40372 -10.29256 -9.80802 -9.41960 -9.16927 -9.03664 -8.65542 -8.35018 -8.17892 -6.19406 -4.28986 0.48553 0.74204 1.44240 1.79467 2.54340 2.79720 3.23181 3.29942 3.33183 3.64829 3.76226 4.29658 4.41225 4.56898 4.60898 4.68403 5.00096 5.03070 5.13799 5.14777 5.32187 5.40579 5.45834 5.63308 5.73401 5.80717 5.89780 6.08686 6.67120 6.71316 6.81255 6.98822 7.14317 7.29191 7.55553 7.62672 7.77002 7.90051 8.02150 8.37704 8.55675 8.81056 9.38028 10.86609 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.040313 B = 0.002346 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.396799 B =11932.181578 C =12293.853409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.035 4.035 4 C -0.244 4.244 5 C 0.070 3.930 6 N -0.476 5.476 7 C 0.274 3.726 8 N -0.616 5.616 9 C 0.502 3.498 10 O -0.452 6.452 11 C 0.499 3.501 12 O -0.535 6.535 13 N -0.665 5.665 14 C 0.261 3.739 15 H 0.056 0.944 16 C -0.149 4.149 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.273 1.273 24 H -0.284 1.284 25 S 0.125 5.875 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.434 0.566 35 H 0.403 0.597 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.017 0.983 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.354 -2.022 1.659 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.366 4.366 5 C -0.082 4.082 6 N -0.197 5.197 7 C -0.095 4.095 8 N -0.269 5.269 9 C 0.281 3.719 10 O -0.318 6.318 11 C 0.277 3.723 12 O -0.414 6.414 13 N -0.314 5.314 14 C 0.161 3.839 15 H 0.073 0.927 16 C -0.207 4.207 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.197 1.197 24 H -0.210 1.210 25 S 0.376 5.624 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.194 0.806 34 H 0.273 0.727 35 H 0.238 0.762 36 H 0.050 0.950 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.702 -2.022 2.396 24.900 hybrid contribution 0.417 0.349 -1.489 1.585 sum -24.285 -1.673 0.907 24.359 Atomic orbital electron populations 1.21780 0.95404 1.01913 1.01917 1.21592 0.95800 0.95834 1.02785 1.20017 0.86291 0.97787 1.03402 1.25731 1.00891 1.16137 0.93854 1.21576 0.85946 1.00558 1.00080 1.66570 1.17560 1.19701 1.15890 1.23617 0.90800 1.02795 0.92275 1.42831 1.00694 1.71289 1.12119 1.21188 0.86905 0.77313 0.86509 1.90847 1.84726 1.41353 1.14889 1.19528 0.84952 0.80527 0.87283 1.90734 1.84799 1.50652 1.15192 1.46520 1.07445 1.67536 1.09853 1.19017 0.73617 0.94661 0.96627 0.92668 1.22107 1.03522 0.96818 0.98298 1.21186 0.92231 1.41753 1.02345 0.91692 1.24882 0.97866 0.95037 0.95828 1.69891 1.13372 1.45688 1.23062 0.86378 0.79948 0.79306 0.81101 1.20437 1.19736 1.21013 1.83920 0.96382 1.71996 1.10068 0.92657 0.92542 0.92520 0.91481 0.91780 0.90714 0.89676 0.80589 0.72660 0.76206 0.95040 0.88643 0.96429 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 3 C -0.03 -0.22 5.75 -27.88 -0.16 -0.38 16 4 C -0.24 -2.29 5.84 -35.95 -0.21 -2.50 16 5 C 0.07 0.81 11.24 -19.17 -0.22 0.59 16 6 N -0.48 -7.30 8.64 -15.17 -0.13 -7.43 16 7 C 0.27 3.80 8.01 -87.56 -0.70 3.10 16 8 N -0.62 -8.95 5.39 -13.55 -0.07 -9.02 16 9 C 0.50 8.92 7.85 -11.65 -0.09 8.82 16 10 O -0.45 -8.94 15.10 5.47 0.08 -8.86 16 11 C 0.50 9.99 7.85 -11.65 -0.09 9.90 16 12 O -0.53 -11.57 16.14 5.48 0.09 -11.48 16 13 N -0.66 -14.26 5.06 -55.41 -0.28 -14.54 16 14 C 0.26 6.53 2.56 -69.09 -0.18 6.35 16 15 H 0.06 1.54 7.58 -51.93 -0.39 1.15 16 16 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 17 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 21 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 S 0.13 1.23 23.22 -107.50 -2.50 -1.26 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.43 5.28 8.29 -40.82 -0.34 4.94 16 35 H 0.40 8.13 8.01 -40.82 -0.33 7.80 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -30.97 351.26 -8.54 -39.51 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.14 Total: 7.26 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.49 Total: 8.65 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.14 Total: -54.64 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.97 -8.54 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190810945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.420 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds