Wall clock time and date at job start Tue Mar 31 2020 10:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.50700 * 109.46875 * 179.97438 * 3 2 1 5 5 C 1.33535 * 125.97096 * 90.00292 * 4 3 2 6 6 N 1.31904 * 114.56328 * 179.74754 * 5 4 3 7 7 C 1.29675 * 116.93008 * 0.51859 * 6 5 4 8 8 N 1.38746 * 124.94559 * 179.77032 * 7 6 5 9 9 C 1.34776 * 120.00467 * 359.69633 * 8 7 6 10 10 O 1.21385 * 119.99570 * 0.02562 * 9 8 7 11 11 C 1.49308 * 120.00454 * 180.02562 * 9 8 7 12 12 O 1.21364 * 119.99818 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99872 * 180.02562 * 11 9 8 14 14 C 1.46497 * 120.00015 * 179.97438 * 13 11 9 15 15 H 1.09003 * 109.46733 * 325.00143 * 14 13 11 16 16 C 1.53000 * 109.47145 * 84.99707 * 14 13 11 17 17 C 1.50694 * 109.47115 * 204.99781 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 S 1.70975 * 110.11211 * 359.50400 * 7 6 5 26 26 H 1.09000 * 109.46982 * 300.00120 * 1 2 3 27 27 H 1.08995 * 109.46787 * 59.99781 * 1 2 3 28 28 H 1.08993 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46982 * 239.99880 * 2 1 3 30 30 H 1.09004 * 109.46547 * 120.00175 * 2 1 3 31 31 H 1.09006 * 109.46860 * 60.00279 * 3 2 1 32 32 H 1.09000 * 109.47090 * 300.00229 * 3 2 1 33 33 H 1.08003 * 122.71338 * 0.02562 * 5 4 3 34 34 H 0.97005 * 120.00010 * 179.69457 * 8 7 6 35 35 H 0.97005 * 120.00104 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47156 * 59.99824 * 16 14 13 37 37 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 38 38 H 1.09007 * 109.47356 * 300.00099 * 16 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 6 4.3319 1.4422 -1.0798 6 7 5.6248 1.4474 -0.8183 7 6 5.9713 1.4415 0.4313 8 7 7.2796 1.4410 0.8932 9 6 8.3037 1.4408 0.0170 10 8 8.0814 1.4415 -1.1763 11 6 9.7116 1.4397 0.5140 12 8 9.9339 1.4395 1.7072 13 7 10.7356 1.4399 -0.3623 14 6 12.1170 1.4394 0.1254 15 1 12.1794 2.0284 1.0405 16 6 12.5558 0.0022 0.4131 17 6 13.0195 2.0402 -0.9213 18 1 12.6056 2.3873 -1.8565 19 6 14.3739 2.1458 -0.6854 20 7 14.8781 1.7227 0.4532 21 14 15.4926 2.8899 -1.9832 22 1 15.9853 1.8182 -2.8855 23 1 14.7350 3.8931 -2.7737 24 1 16.6470 3.5499 -1.3221 25 16 4.5813 1.4419 1.4268 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9397 1.4425 -2.0861 34 1 7.4573 1.4409 1.8468 35 1 10.5579 1.4405 -1.3159 36 1 12.4933 -0.5868 -0.5020 37 1 13.5834 0.0018 0.7763 38 1 11.9030 -0.4324 1.1702 39 1 15.8309 1.7966 0.6189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190810945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:18 Heat of formation + Delta-G solvation = -49.553621 kcal Electronic energy + Delta-G solvation = -22348.197526 eV Core-core repulsion = 18802.967043 eV Total energy + Delta-G solvation = -3545.230483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11467 -40.73657 -39.51140 -37.20404 -36.59345 -35.61349 -34.35647 -31.33794 -31.05773 -28.08243 -27.38052 -26.31912 -24.93364 -23.23247 -22.38358 -21.67601 -20.80732 -20.49416 -18.84035 -18.07791 -17.90372 -17.34091 -17.19551 -16.91041 -16.03374 -15.88403 -15.72553 -15.61355 -15.09558 -14.85042 -14.63892 -14.45917 -14.02958 -13.76912 -13.26264 -13.12224 -12.94891 -12.90450 -12.72342 -12.57956 -12.32601 -12.26651 -12.23518 -12.15445 -11.81146 -11.49518 -11.17628 -11.06687 -10.65270 -10.36368 -10.26241 -10.03150 -9.28643 -8.21485 -6.38569 -0.51331 -0.18682 0.40242 0.59125 1.27002 1.45163 1.46038 1.56667 1.79107 2.16388 2.35073 2.50637 3.09210 3.31241 3.62455 3.85107 4.08387 4.20996 4.41627 4.61986 4.68202 4.72336 4.86919 4.87121 4.88027 4.99478 5.00993 5.10167 5.26756 5.28867 5.35350 5.39314 5.49113 5.54600 5.62539 5.77536 6.01670 6.27626 6.60291 6.67293 6.86984 6.99813 7.33106 8.84600 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.040313 B = 0.002346 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.396799 B =11932.181578 C =12293.853409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.036 4.036 4 C -0.221 4.221 5 C 0.042 3.958 6 N -0.512 5.512 7 C 0.226 3.774 8 N -0.604 5.604 9 C 0.514 3.486 10 O -0.477 6.477 11 C 0.502 3.498 12 O -0.552 6.552 13 N -0.668 5.668 14 C 0.268 3.732 15 H 0.019 0.981 16 C -0.137 4.137 17 C -0.553 4.553 18 H 0.069 0.931 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.282 1.282 25 S 0.194 5.806 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.193 0.807 34 H 0.443 0.557 35 H 0.410 0.590 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.685 -1.778 1.366 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.344 4.344 5 C -0.109 4.109 6 N -0.234 5.234 7 C -0.140 4.140 8 N -0.258 5.258 9 C 0.292 3.708 10 O -0.346 6.346 11 C 0.281 3.719 12 O -0.432 6.432 13 N -0.317 5.317 14 C 0.166 3.834 15 H 0.037 0.963 16 C -0.195 4.195 17 C -0.591 4.591 18 H 0.087 0.913 19 C -0.181 4.181 20 N -0.549 5.549 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.193 1.193 24 H -0.208 1.208 25 S 0.446 5.554 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.210 0.790 34 H 0.284 0.716 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.088 -1.783 2.129 27.230 hybrid contribution 0.906 0.264 -1.304 1.610 sum -26.181 -1.519 0.825 26.238 Atomic orbital electron populations 1.21761 0.94271 1.02216 1.02551 1.21569 0.96749 0.95247 1.02303 1.20215 0.83862 0.98475 1.05009 1.26287 1.02412 1.12351 0.93314 1.21833 0.85064 1.02370 1.01584 1.66501 1.19844 1.19649 1.17436 1.23744 0.91104 1.05720 0.93416 1.42529 1.00809 1.70485 1.11983 1.20466 0.86323 0.77627 0.86410 1.90836 1.84852 1.43208 1.15686 1.19891 0.85936 0.79289 0.86756 1.90715 1.85456 1.51083 1.15972 1.46283 1.06706 1.68346 1.10405 1.18670 0.75404 0.94322 0.95041 0.96342 1.21936 1.02304 0.96638 0.98666 1.21472 0.92860 1.42077 1.02710 0.91277 1.25720 0.99267 0.95323 0.97762 1.70012 1.13765 1.46421 1.24668 0.85339 0.77855 0.78583 0.78537 1.19686 1.19279 1.20779 1.83683 0.93407 1.69906 1.08419 0.92024 0.91926 0.92454 0.92071 0.92268 0.89210 0.87973 0.78992 0.71585 0.75429 0.94213 0.90642 0.95912 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 3 C -0.04 -0.34 5.75 29.85 0.17 -0.16 16 4 C -0.22 -3.61 5.84 24.62 0.14 -3.47 16 5 C 0.04 0.91 11.24 83.62 0.94 1.85 16 6 N -0.51 -15.48 8.64 -201.91 -1.74 -17.23 16 7 C 0.23 6.12 8.01 179.28 1.44 7.56 16 8 N -0.60 -17.48 5.39 -315.13 -1.70 -19.18 16 9 C 0.51 18.48 7.85 87.23 0.68 19.17 16 10 O -0.48 -19.18 15.10 -3.35 -0.05 -19.23 16 11 C 0.50 20.52 7.85 87.23 0.68 21.20 16 12 O -0.55 -24.40 16.14 -3.29 -0.05 -24.45 16 13 N -0.67 -29.29 5.06 -447.59 -2.27 -31.56 16 14 C 0.27 13.72 2.56 44.24 0.11 13.83 16 15 H 0.02 1.09 7.58 -2.39 -0.02 1.07 16 16 C -0.14 -6.75 9.26 71.98 0.67 -6.08 16 17 C -0.55 -29.42 8.73 25.60 0.22 -29.20 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 19 C 0.02 1.07 5.30 84.66 0.45 1.52 16 20 N -0.91 -50.83 11.32 21.45 0.24 -50.59 16 21 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 S 0.19 3.39 23.22 -56.49 -1.31 2.08 16 26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 31 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.44 10.64 8.29 -92.70 -0.77 9.87 16 35 H 0.41 16.84 8.01 -92.70 -0.74 16.10 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 38 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -67.25 351.26 1.14 -66.11 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.41 Total: 24.98 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.41 Total: 24.97 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -5.46 Total: -118.55 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.10 Total: -43.68 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.31 Total: 2.08 kcal Total: -67.25 1.14 -66.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190810945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.559 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds