Wall clock time and date at job start Tue Mar 31 2020 10:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47049 * 2 1 4 4 C 1.53005 * 109.46649 * 119.99932 * 2 1 3 5 5 N 1.46505 * 109.46513 * 174.99935 * 4 2 1 6 6 C 1.46499 * 119.99992 * 96.17276 * 5 4 2 7 7 C 1.50706 * 109.47166 * 89.99521 * 6 5 4 8 8 H 1.08000 * 119.99497 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99669 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99728 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00491 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.46940 * 89.99852 * 11 9 7 13 13 H 1.48501 * 109.47125 * 209.99935 * 11 9 7 14 14 H 1.48501 * 109.46746 * 329.99806 * 11 9 7 15 15 C 1.34775 * 119.99902 * 276.16896 * 5 4 2 16 16 O 1.21560 * 119.99996 * 5.28421 * 15 5 4 17 17 C 1.47782 * 120.00046 * 185.28628 * 15 5 4 18 18 C 1.39580 * 120.12951 * 57.45141 * 17 15 5 19 19 C 1.38396 * 119.80472 * 179.81624 * 18 17 15 20 20 O 1.35929 * 119.96536 * 180.18927 * 19 18 17 21 21 C 1.38875 * 120.07029 * 0.44373 * 19 18 17 22 22 C 1.38194 * 120.26205 * 359.79013 * 21 19 18 23 23 C 1.38170 * 120.19431 * 359.97438 * 22 21 19 24 24 Cl 1.73600 * 120.03765 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47221 * 299.99982 * 1 2 3 26 26 H 1.09005 * 109.47100 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46610 * 239.99302 * 2 1 3 29 29 H 1.09003 * 109.47771 * 59.99684 * 3 2 1 30 30 H 1.09008 * 109.47233 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47314 * 299.99445 * 3 2 1 32 32 H 1.09000 * 109.47145 * 55.00193 * 4 2 1 33 33 H 1.08998 * 109.47163 * 294.99508 * 4 2 1 34 34 H 1.08998 * 109.47252 * 209.99589 * 6 5 4 35 35 H 1.08998 * 109.46908 * 329.99657 * 6 5 4 36 36 H 0.96998 * 120.00384 * 179.97438 * 10 9 7 37 37 H 1.07996 * 120.09271 * 0.02812 * 18 17 15 38 38 H 0.96702 * 113.99948 * 270.25329 * 20 19 18 39 39 H 1.08002 * 119.87146 * 179.76893 * 21 19 18 40 40 H 1.08009 * 119.90707 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3339 0.1628 1.8779 7 6 4.6089 -0.3024 3.2847 8 1 4.2034 -1.2413 3.6319 9 6 5.3789 0.4701 4.1280 10 7 5.6193 0.0639 5.3556 11 14 6.0808 2.0936 3.5272 12 1 5.1159 3.1858 3.8124 13 1 7.3611 2.3688 4.2274 14 1 6.3233 2.0168 2.0641 15 6 4.0761 -1.8332 0.5044 16 8 3.3890 -2.5977 -0.1446 17 6 5.5431 -2.0080 0.5410 18 6 6.1978 -2.1812 1.7615 19 6 7.5714 -2.3481 1.7876 20 8 8.2119 -2.5209 2.9741 21 6 8.2968 -2.3338 0.6035 22 6 7.6521 -2.1577 -0.6061 23 6 6.2805 -1.9950 -0.6453 24 17 5.4749 -1.7733 -2.1669 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 5.2764 0.2783 1.3426 35 1 3.8129 1.1198 1.9070 36 1 6.1614 0.6071 5.9488 37 1 5.6337 -2.1884 2.6824 38 1 8.4987 -1.6963 3.3900 39 1 9.3691 -2.4606 0.6279 40 1 8.2219 -2.1472 -1.5236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232595360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:44 Heat of formation + Delta-G solvation = -66.160609 kcal Electronic energy + Delta-G solvation = -24715.215191 eV Core-core repulsion = 21134.928117 eV Total energy + Delta-G solvation = -3580.287073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03031 -38.65945 -36.79129 -36.04915 -35.57184 -34.18020 -32.44068 -30.94500 -29.21097 -28.32078 -26.89409 -26.00348 -23.34105 -22.63389 -22.02659 -20.21625 -19.14325 -17.53035 -17.25829 -16.52032 -16.16051 -15.86350 -15.51811 -14.83723 -14.60798 -14.36350 -13.96048 -13.66627 -13.29200 -13.08879 -12.79611 -12.63668 -12.46872 -12.22209 -12.14889 -11.90908 -11.79482 -11.52550 -11.21905 -10.97749 -10.93863 -10.80549 -10.66037 -10.51753 -10.42543 -10.35168 -10.21442 -9.68777 -9.24350 -8.84001 -8.66590 -8.20176 -7.81093 -6.34414 -4.34712 1.17434 1.48677 2.38232 3.06796 3.15848 3.17123 3.19203 3.63504 3.93293 4.14700 4.54805 4.92518 4.96509 5.09949 5.21331 5.23500 5.37357 5.40235 5.63330 5.75597 5.82231 5.90748 5.95952 6.07393 6.15154 6.19014 6.21634 6.26628 6.34157 6.35277 6.49959 6.58137 6.61560 6.66949 6.68146 6.99145 7.27096 7.33547 7.99380 7.99542 8.27920 8.66014 8.79871 9.24032 10.76413 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.008450 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.495828 B = 3312.902365 C = 5259.192505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.128 3.872 5 N -0.581 5.581 6 C 0.205 3.795 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.882 5.882 11 Si 0.861 3.139 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.563 3.437 16 O -0.545 6.545 17 C -0.097 4.097 18 C -0.067 4.067 19 C 0.104 3.896 20 O -0.493 6.493 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.013 4.013 24 Cl -0.064 7.064 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.268 0.732 37 H 0.174 0.826 38 H 0.395 0.605 39 H 0.134 0.866 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 1.015 -9.265 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.203 4.203 4 C 0.005 3.995 5 N -0.310 5.310 6 C 0.083 3.917 7 C -0.578 4.578 8 H 0.100 0.900 9 C -0.123 4.123 10 N -0.519 5.519 11 Si 0.687 3.313 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.188 1.188 15 C 0.350 3.650 16 O -0.424 6.424 17 C -0.101 4.101 18 C -0.086 4.086 19 C 0.059 3.941 20 O -0.304 6.304 21 C -0.145 4.145 22 C -0.134 4.134 23 C -0.040 4.040 24 Cl -0.035 7.035 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.191 0.809 38 H 0.251 0.749 39 H 0.152 0.848 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.759 0.123 -9.637 9.668 hybrid contribution 0.620 1.612 -0.026 1.727 sum 1.379 1.734 -9.663 9.914 Atomic orbital electron populations 1.21741 0.95141 1.01595 1.01394 1.21497 0.95419 0.96604 0.99730 1.21877 1.01649 0.95798 1.00997 1.21416 0.79861 1.00846 0.97365 1.47812 1.06502 1.27045 1.49629 1.19917 0.90439 0.88002 0.93295 1.21364 1.33083 1.08454 0.94871 0.89983 1.24810 0.95635 0.97334 0.94551 1.69893 1.37971 1.38223 1.05834 0.87070 0.79465 0.84981 0.79785 1.19726 1.20743 1.18767 1.17998 0.86750 0.80993 0.79244 1.90725 1.63996 1.45237 1.42455 1.19659 0.94330 1.03960 0.92119 1.22336 0.94392 0.93107 0.98763 1.18406 0.90436 0.99680 0.85590 1.84766 1.76636 1.35548 1.33434 1.21431 1.00429 1.01064 0.91592 1.20678 0.91786 1.02460 0.98486 1.20863 0.92576 1.04216 0.86357 1.98358 1.80018 1.95359 1.29769 0.92706 0.92982 0.92693 0.90791 0.92695 0.92332 0.93441 0.91040 0.89946 0.95051 0.94668 0.92227 0.80900 0.74876 0.84832 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.73 3.08 -90.62 -0.28 -2.01 16 3 C -0.15 -2.14 8.35 37.15 0.31 -1.83 16 4 C 0.13 2.25 4.74 -4.04 -0.02 2.24 16 5 N -0.58 -11.59 2.18 -176.19 -0.38 -11.98 16 6 C 0.20 4.32 2.89 -5.19 -0.01 4.30 16 7 C -0.54 -12.93 7.13 -34.44 -0.25 -13.17 16 8 H 0.08 2.20 7.44 -52.49 -0.39 1.81 16 9 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.88 -23.37 13.96 55.43 0.77 -22.60 16 11 Si 0.86 18.55 27.47 -169.99 -4.67 13.88 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 15 C 0.56 11.73 6.40 -12.36 -0.08 11.65 16 16 O -0.54 -12.17 15.91 5.31 0.08 -12.09 16 17 C -0.10 -1.90 4.37 -104.95 -0.46 -2.36 16 18 C -0.07 -1.32 7.85 -39.02 -0.31 -1.63 16 19 C 0.10 1.80 6.69 -39.29 -0.26 1.53 16 20 O -0.49 -8.22 13.50 -19.52 -0.26 -8.48 16 21 C -0.13 -1.85 9.98 -39.36 -0.39 -2.24 16 22 C -0.12 -1.69 9.81 -39.62 -0.39 -2.08 16 23 C -0.01 -0.22 6.35 -39.07 -0.25 -0.47 16 24 Cl -0.06 -1.07 27.50 -51.86 -1.43 -2.49 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.95 6.37 -51.92 -0.33 0.62 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 33 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.03 0.68 5.86 -51.93 -0.30 0.38 16 35 H 0.04 0.73 6.12 -51.93 -0.32 0.41 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.17 3.84 5.39 -52.49 -0.28 3.56 16 38 H 0.39 5.35 9.06 45.56 0.41 5.76 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -27.91 342.60 -7.43 -35.34 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.57 Total: 8.85 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.14 Total: -5.59 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.39 Total: -34.58 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.18 Total: -20.57 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.67 Total: 13.88 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.43 Total: -2.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.91 -7.43 -35.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232595360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.823 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds