Wall clock time and date at job start Tue Mar 31 2020 10:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47049 * 2 1 4 4 C 1.53005 * 109.46649 * 119.99932 * 2 1 3 5 5 N 1.46505 * 109.46513 * 174.99935 * 4 2 1 6 6 C 1.46499 * 119.99992 * 96.17276 * 5 4 2 7 7 C 1.50706 * 109.47166 * 89.99521 * 6 5 4 8 8 H 1.08000 * 119.99497 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99669 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99728 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00491 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.46940 * 89.99852 * 11 9 7 13 13 H 1.48501 * 109.47125 * 209.99935 * 11 9 7 14 14 H 1.48501 * 109.46746 * 329.99806 * 11 9 7 15 15 C 1.34775 * 119.99902 * 276.16896 * 5 4 2 16 16 O 1.21560 * 119.99996 * 5.28421 * 15 5 4 17 17 C 1.47782 * 120.00046 * 185.28628 * 15 5 4 18 18 C 1.39580 * 120.12951 * 57.45141 * 17 15 5 19 19 C 1.38396 * 119.80472 * 179.81624 * 18 17 15 20 20 O 1.35929 * 119.96536 * 180.18927 * 19 18 17 21 21 C 1.38875 * 120.07029 * 0.44373 * 19 18 17 22 22 C 1.38194 * 120.26205 * 359.79013 * 21 19 18 23 23 C 1.38170 * 120.19431 * 359.97438 * 22 21 19 24 24 Cl 1.73600 * 120.03765 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47221 * 299.99982 * 1 2 3 26 26 H 1.09005 * 109.47100 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46610 * 239.99302 * 2 1 3 29 29 H 1.09003 * 109.47771 * 59.99684 * 3 2 1 30 30 H 1.09008 * 109.47233 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47314 * 299.99445 * 3 2 1 32 32 H 1.09000 * 109.47145 * 55.00193 * 4 2 1 33 33 H 1.08998 * 109.47163 * 294.99508 * 4 2 1 34 34 H 1.08998 * 109.47252 * 209.99589 * 6 5 4 35 35 H 1.08998 * 109.46908 * 329.99657 * 6 5 4 36 36 H 0.96998 * 120.00384 * 179.97438 * 10 9 7 37 37 H 1.07996 * 120.09271 * 0.02812 * 18 17 15 38 38 H 0.96702 * 113.99948 * 270.25329 * 20 19 18 39 39 H 1.08002 * 119.87146 * 179.76893 * 21 19 18 40 40 H 1.08009 * 119.90707 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3339 0.1628 1.8779 7 6 4.6089 -0.3024 3.2847 8 1 4.2034 -1.2413 3.6319 9 6 5.3789 0.4701 4.1280 10 7 5.6193 0.0639 5.3556 11 14 6.0808 2.0936 3.5272 12 1 5.1159 3.1858 3.8124 13 1 7.3611 2.3688 4.2274 14 1 6.3233 2.0168 2.0641 15 6 4.0761 -1.8332 0.5044 16 8 3.3890 -2.5977 -0.1446 17 6 5.5431 -2.0080 0.5410 18 6 6.1978 -2.1812 1.7615 19 6 7.5714 -2.3481 1.7876 20 8 8.2119 -2.5209 2.9741 21 6 8.2968 -2.3338 0.6035 22 6 7.6521 -2.1577 -0.6061 23 6 6.2805 -1.9950 -0.6453 24 17 5.4749 -1.7733 -2.1669 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 5.2764 0.2783 1.3426 35 1 3.8129 1.1198 1.9070 36 1 6.1614 0.6071 5.9488 37 1 5.6337 -2.1884 2.6824 38 1 8.4987 -1.6963 3.3900 39 1 9.3691 -2.4606 0.6279 40 1 8.2219 -2.1472 -1.5236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232595360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:44 Heat of formation + Delta-G solvation = -82.943774 kcal Electronic energy + Delta-G solvation = -24715.942963 eV Core-core repulsion = 21134.928117 eV Total energy + Delta-G solvation = -3581.014846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51544 -40.07992 -38.12538 -37.51157 -36.92372 -35.71973 -34.24598 -32.28857 -30.56671 -30.06987 -28.02323 -27.43866 -24.90013 -24.16996 -23.45022 -21.52749 -20.56051 -19.17819 -18.93934 -17.95131 -17.65567 -17.28879 -16.98314 -16.29451 -16.11544 -15.76317 -15.42731 -15.11545 -14.62886 -14.58128 -14.29249 -14.13629 -13.77969 -13.72243 -13.55766 -13.21493 -13.09087 -12.99402 -12.66632 -12.55098 -12.28079 -12.20728 -11.98839 -11.91823 -11.84765 -11.79287 -11.59210 -11.51350 -10.80858 -10.74776 -10.03504 -9.53935 -9.44651 -8.26721 -6.31136 -0.17811 0.15290 1.05684 1.36203 1.41291 1.48103 1.62419 2.15101 2.33217 2.51754 3.05630 3.24524 3.52494 3.83162 3.95232 4.01050 4.15496 4.17057 4.32257 4.44281 4.57077 4.64165 4.69686 4.76424 4.83155 4.88940 4.92223 4.96700 5.00940 5.03779 5.13175 5.21996 5.36029 5.38083 5.41980 5.47501 5.60774 5.71219 6.16840 6.53097 6.68407 6.77262 7.15700 7.31851 8.87640 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.008450 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.495828 B = 3312.902365 C = 5259.192505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.143 4.143 4 C 0.123 3.877 5 N -0.583 5.583 6 C 0.219 3.781 7 C -0.529 4.529 8 H 0.039 0.961 9 C 0.038 3.962 10 N -0.927 5.927 11 Si 0.919 3.081 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.249 1.249 15 C 0.558 3.442 16 O -0.568 6.568 17 C -0.119 4.119 18 C -0.089 4.089 19 C 0.097 3.903 20 O -0.502 6.502 21 C -0.106 4.106 22 C -0.098 4.098 23 C -0.024 4.024 24 Cl -0.059 7.059 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.269 0.731 37 H 0.136 0.864 38 H 0.406 0.594 39 H 0.175 0.825 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 2.496 -11.319 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.097 3.903 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.163 4.163 10 N -0.566 5.566 11 Si 0.743 3.257 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.173 1.173 15 C 0.346 3.654 16 O -0.449 6.449 17 C -0.123 4.123 18 C -0.109 4.109 19 C 0.052 3.948 20 O -0.315 6.315 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.051 4.051 24 Cl -0.030 7.030 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.265 0.735 39 H 0.193 0.807 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.118 1.613 -11.697 11.996 hybrid contribution 0.191 1.034 0.630 1.226 sum 2.308 2.646 -11.067 11.611 Atomic orbital electron populations 1.21702 0.92747 1.02014 1.02816 1.21407 0.97337 0.96549 0.97187 1.21849 1.00434 0.95312 1.02408 1.21586 0.78740 1.00717 0.98921 1.47878 1.07381 1.26756 1.49126 1.19689 0.90756 0.88385 0.91441 1.21319 1.32453 1.06679 0.96268 0.94329 1.25454 0.95870 1.00531 0.94398 1.70024 1.39372 1.39875 1.07292 0.86128 0.78845 0.80697 0.80013 1.19357 1.20310 1.17258 1.18319 0.87583 0.80641 0.78832 1.90689 1.64770 1.45889 1.43587 1.19622 0.93652 1.05908 0.93142 1.22013 0.95612 0.95777 0.97464 1.18559 0.89675 0.99710 0.86840 1.84730 1.76394 1.36636 1.33721 1.21788 1.02170 0.98502 0.90023 1.21147 0.90600 0.99811 1.00097 1.21079 0.93709 1.04541 0.85806 1.98356 1.80275 1.95337 1.29073 0.91630 0.91159 0.92856 0.92785 0.92003 0.94165 0.91296 0.92149 0.89844 0.95065 0.93593 0.92160 0.84652 0.73497 0.80736 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.19 71.98 0.66 -2.52 16 2 C -0.11 -3.17 3.08 -10.79 -0.03 -3.20 16 3 C -0.14 -3.96 8.35 71.98 0.60 -3.35 16 4 C 0.12 4.43 4.74 86.38 0.41 4.84 16 5 N -0.58 -23.95 2.18 -829.62 -1.81 -25.76 16 6 C 0.22 9.34 2.89 85.64 0.25 9.59 16 7 C -0.53 -26.31 7.13 25.60 0.18 -26.13 16 8 H 0.04 2.23 7.44 -2.91 -0.02 2.20 16 9 C 0.04 1.91 5.47 84.65 0.46 2.37 16 10 N -0.93 -50.60 13.96 21.45 0.30 -50.30 16 11 Si 0.92 37.71 27.47 68.60 1.88 39.60 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 13 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.25 -9.57 6.54 99.48 0.65 -8.92 16 15 C 0.56 23.97 6.40 86.77 0.56 24.52 16 16 O -0.57 -26.17 15.91 -3.91 -0.06 -26.24 16 17 C -0.12 -4.74 4.37 -20.08 -0.09 -4.83 16 18 C -0.09 -3.62 7.85 22.63 0.18 -3.44 16 19 C 0.10 3.27 6.69 22.46 0.15 3.42 16 20 O -0.50 -16.47 13.50 -92.75 -1.25 -17.72 16 21 C -0.11 -2.74 9.98 22.41 0.22 -2.51 16 22 C -0.10 -2.53 9.81 22.24 0.22 -2.31 16 23 C -0.02 -0.80 6.35 22.60 0.14 -0.65 16 24 Cl -0.06 -1.90 27.50 -2.72 -0.07 -1.97 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.85 7.94 -2.39 -0.02 1.83 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.25 6.37 -2.38 -0.02 1.23 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 2.28 7.70 -2.39 -0.02 2.26 16 33 H 0.08 2.94 8.03 -2.39 -0.02 2.92 16 34 H 0.03 1.35 5.86 -2.39 -0.01 1.34 16 35 H 0.05 1.87 6.12 -2.39 -0.01 1.86 16 36 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.14 6.48 5.39 -2.91 -0.02 6.47 16 38 H 0.41 10.82 9.06 -74.06 -0.67 10.15 16 39 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -62.69 342.60 3.24 -59.45 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.34 Total: 27.17 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.91 Total: -4.23 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -1.51 Total: -76.06 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.31 Total: -43.96 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.88 Total: 39.60 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -62.69 3.24 -59.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232595360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.496 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds