Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 O 1.42906 * 109.46802 * 120.00022 * 2 1 3 5 5 C 1.35916 * 117.00110 * 59.06476 * 4 2 1 6 6 C 1.38722 * 120.04406 * 6.17440 * 5 4 2 7 7 C 1.38146 * 119.95930 * 180.22941 * 6 5 4 8 8 C 1.38364 * 120.03828 * 359.48807 * 7 6 5 9 9 Cl 1.73604 * 119.95536 * 180.27466 * 8 7 6 10 10 C 1.38366 * 120.08675 * 0.26037 * 8 7 6 11 11 C 1.38138 * 120.04266 * 359.97438 * 10 8 7 12 12 C 1.50695 * 109.47192 * 239.99749 * 2 1 3 13 13 O 1.21284 * 120.00064 * 240.00170 * 12 2 1 14 14 N 1.34778 * 119.99897 * 60.00463 * 12 2 1 15 15 C 1.46503 * 120.00107 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47433 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47223 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00319 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00144 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00246 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99654 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47075 * 89.99749 * 21 19 17 23 23 H 1.48500 * 109.46845 * 209.99709 * 21 19 17 24 24 H 1.48498 * 109.47209 * 329.99976 * 21 19 17 25 25 H 1.09003 * 109.47226 * 311.29622 * 1 2 3 26 26 H 1.09003 * 109.46679 * 71.29498 * 1 2 3 27 27 H 1.09000 * 109.47188 * 191.29310 * 1 2 3 28 28 H 1.09004 * 109.46485 * 175.29571 * 3 2 1 29 29 H 1.08995 * 109.47196 * 295.29160 * 3 2 1 30 30 H 1.09005 * 109.47167 * 55.30180 * 3 2 1 31 31 H 1.08000 * 120.01934 * 359.97311 * 6 5 4 32 32 H 1.07995 * 119.97977 * 179.76376 * 7 6 5 33 33 H 1.08004 * 119.97600 * 180.02562 * 10 8 7 34 34 H 1.08007 * 120.02031 * 180.02562 * 11 10 8 35 35 H 0.96993 * 120.00353 * 359.97438 * 14 12 2 36 36 H 1.09005 * 109.46538 * 299.99614 * 15 14 12 37 37 H 1.09001 * 109.46962 * 59.99349 * 15 14 12 38 38 H 1.09004 * 109.46496 * 299.99661 * 16 15 14 39 39 H 1.08994 * 109.47217 * 59.99191 * 16 15 14 40 40 H 0.97001 * 120.00065 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 1.6250 -1.9679 1.3310 6 6 0.9174 -2.6159 0.3291 7 6 0.5266 -3.9299 0.4998 8 6 0.8498 -4.6029 1.6647 9 17 0.3637 -6.2563 1.8739 10 6 1.5600 -3.9599 2.6630 11 6 1.9483 -2.6445 2.4980 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6855 -0.2192 -4.9000 17 6 2.1878 -0.9297 -6.1303 18 1 2.8086 -1.8078 -6.0313 19 6 1.8549 -0.4585 -7.3827 20 7 2.2938 -1.0782 -8.4564 21 14 0.7817 1.0608 -7.5541 22 1 1.6409 2.2712 -7.5996 23 1 -0.0103 0.9686 -8.8069 24 1 -0.1386 1.1505 -6.3921 25 1 -0.3634 0.6782 0.7721 26 1 -0.3633 0.3296 -0.9734 27 1 -0.3633 -1.0078 0.2012 28 1 3.1267 1.4436 0.0843 29 1 1.7471 1.9314 -0.9291 30 1 1.6095 1.9801 0.8449 31 1 0.6685 -2.0921 -0.5820 32 1 -0.0276 -4.4335 -0.2784 33 1 1.8117 -4.4871 3.5714 34 1 2.5031 -2.1431 3.2774 35 1 1.1489 0.5385 -2.5436 36 1 3.2847 -0.9413 -3.6508 37 1 1.8310 -1.9684 -3.6505 38 1 0.5954 -0.2185 -4.9000 39 1 2.0495 0.8081 -4.8998 40 1 2.0598 -0.7465 -9.3374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273089812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = -70.795344 kcal Electronic energy + Delta-G solvation = -23578.207338 eV Core-core repulsion = 19997.719288 eV Total energy + Delta-G solvation = -3580.488051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51224 -40.14556 -38.70091 -37.22036 -36.71537 -35.17791 -34.30948 -32.23325 -31.75270 -30.67165 -28.36407 -27.09999 -24.91852 -23.66402 -23.53062 -22.61989 -21.17587 -19.55456 -19.00588 -18.12203 -17.65445 -17.23744 -16.71682 -16.53710 -16.22366 -15.85244 -15.58541 -15.17332 -15.05517 -14.75324 -14.61627 -14.20444 -13.90500 -13.80090 -13.46653 -13.36908 -13.27751 -13.16490 -13.04143 -12.97946 -12.37547 -12.31181 -12.22964 -12.13411 -11.80110 -11.76868 -11.68324 -11.52616 -10.79562 -10.76571 -10.22155 -10.00762 -9.07182 -8.30524 -6.38507 0.18707 0.21982 1.16216 1.39260 1.39739 1.42324 1.53225 1.90270 2.09774 2.36649 2.58740 3.04792 3.49850 3.60129 3.64157 3.76328 3.80193 4.11263 4.26848 4.30721 4.38389 4.41355 4.54963 4.62561 4.67448 4.71803 4.75764 4.84712 4.98039 5.04406 5.09852 5.12470 5.20740 5.25646 5.36041 5.38527 5.52179 5.61428 6.16330 6.20694 6.47338 6.69727 7.10739 7.26298 8.86392 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.003313 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.986789 B = 8448.642971 C = 9637.705201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.098 3.902 3 C -0.136 4.136 4 O -0.293 6.293 5 C 0.132 3.868 6 C -0.179 4.179 7 C -0.091 4.091 8 C -0.080 4.080 9 Cl -0.073 7.073 10 C -0.073 4.073 11 C -0.145 4.145 12 C 0.480 3.520 13 O -0.568 6.568 14 N -0.705 5.705 15 C 0.145 3.855 16 C -0.012 4.012 17 C -0.541 4.541 18 H 0.025 0.975 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.960 3.040 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.232 1.232 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 4.543 25.219 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.056 3.944 3 C -0.193 4.193 4 O -0.205 6.205 5 C 0.087 3.913 6 C -0.198 4.198 7 C -0.109 4.109 8 C -0.107 4.107 9 Cl -0.044 7.044 10 C -0.092 4.092 11 C -0.163 4.163 12 C 0.266 3.734 13 O -0.448 6.448 14 N -0.359 5.359 15 C 0.022 3.978 16 C -0.049 4.049 17 C -0.579 4.579 18 H 0.044 0.956 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.782 3.218 22 H -0.189 1.189 23 H -0.215 1.215 24 H -0.155 1.155 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.253 0.747 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.186 3.819 25.253 26.532 hybrid contribution -0.217 -0.043 -1.325 1.343 sum -7.403 3.776 23.929 25.331 Atomic orbital electron populations 1.22839 0.90380 1.05285 1.06369 1.22098 0.96857 0.94235 0.81181 1.21942 1.02637 0.88504 1.06212 1.86164 1.70444 1.22072 1.41857 1.19121 0.93699 0.84185 0.94318 1.21473 1.02984 0.96195 0.99163 1.20962 0.99473 0.93867 0.96637 1.20871 1.05343 0.86921 0.97560 1.98349 1.90730 1.17998 1.97311 1.21076 0.95701 0.93520 0.98866 1.20618 1.04499 0.94367 0.96863 1.21724 0.80588 0.84794 0.86244 1.90794 1.39377 1.27610 1.86977 1.46073 1.52837 1.32086 1.04875 1.21048 0.97756 0.95546 0.83495 1.19646 0.97536 0.96518 0.91232 1.21251 1.32306 1.12986 0.91392 0.95615 1.26117 0.97278 1.01018 0.94988 1.70082 1.47361 1.42895 0.98836 0.85532 0.79217 0.78329 0.78753 1.18936 1.21492 1.15474 0.87437 0.88498 0.91084 0.91808 0.87716 0.87545 0.85370 0.84753 0.81843 0.82253 0.74725 0.93916 0.93823 0.94184 0.94337 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 8.14 71.98 0.59 -2.35 16 2 C 0.10 2.05 0.96 -11.54 -0.01 2.04 16 3 C -0.14 -1.94 8.77 71.98 0.63 -1.31 16 4 O -0.29 -7.32 9.63 -73.57 -0.71 -8.03 16 5 C 0.13 3.47 5.53 22.50 0.12 3.60 16 6 C -0.18 -5.00 5.53 22.36 0.12 -4.87 16 7 C -0.09 -2.40 9.82 22.28 0.22 -2.18 16 8 C -0.08 -1.91 6.32 22.33 0.14 -1.76 16 9 Cl -0.07 -1.57 28.95 -2.72 -0.08 -1.65 16 10 C -0.07 -1.50 9.82 22.28 0.22 -1.28 16 11 C -0.14 -3.16 9.99 22.36 0.22 -2.94 16 12 C 0.48 14.23 4.56 87.66 0.40 14.63 16 13 O -0.57 -22.36 13.80 16.00 0.22 -22.14 16 14 N -0.71 -20.00 5.23 -463.06 -2.42 -22.42 16 15 C 0.15 5.64 5.61 86.38 0.48 6.12 16 16 C -0.01 -0.49 4.15 29.85 0.12 -0.36 16 17 C -0.54 -30.24 9.66 25.60 0.25 -30.00 16 18 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 21 Si 0.96 40.88 27.47 68.60 1.88 42.77 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 25 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.10 1.18 7.28 -2.39 -0.02 1.16 16 27 H 0.07 1.32 4.85 -2.39 -0.01 1.30 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.10 1.09 7.43 -2.39 -0.02 1.07 16 30 H 0.11 0.98 8.11 -2.38 -0.02 0.97 16 31 H 0.13 3.70 3.84 -2.91 -0.01 3.69 16 32 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.42 8.55 7.17 -92.71 -0.66 7.89 16 36 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.56 7.20 -2.38 -0.02 1.55 16 39 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.73 340.53 3.52 -70.21 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.35 Total: 19.78 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.98 Total: -20.03 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.12 Total: -80.92 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.49 Total: -30.17 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.77 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -73.73 3.52 -70.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273089812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.583 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds