Wall clock time and date at job start Tue Mar 31 2020 09:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 O 1.42896 * 109.46804 * 60.15880 * 3 2 1 5 5 C 1.50703 * 109.47201 * 300.16469 * 3 2 1 6 6 O 1.21284 * 119.99667 * 275.48449 * 5 3 2 7 7 N 1.34770 * 120.00203 * 95.48040 * 5 3 2 8 8 C 1.46504 * 120.00143 * 356.59929 * 7 5 3 9 9 C 1.46506 * 120.00144 * 176.58882 * 7 5 3 10 10 C 1.50705 * 109.46632 * 90.00022 * 9 7 5 11 11 H 1.07993 * 120.00028 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99467 * 179.97438 * 10 9 7 13 13 N 1.31509 * 120.00381 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99654 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47218 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47269 * 120.00049 * 14 12 10 17 17 H 1.48498 * 109.47052 * 240.00593 * 14 12 10 18 18 C 1.50701 * 109.47194 * 180.16130 * 3 2 1 19 19 C 1.38253 * 119.99072 * 29.72416 * 18 3 2 20 20 C 1.38218 * 120.02475 * 179.76807 * 19 18 3 21 21 C 1.38236 * 120.01260 * 0.50752 * 20 19 18 22 22 C 1.38331 * 119.98793 * 359.74824 * 21 20 19 23 23 Cl 1.73593 * 120.01703 * 180.02562 * 22 21 20 24 24 C 1.38194 * 119.99038 * 210.00085 * 18 3 2 25 25 H 1.08999 * 109.47333 * 177.85720 * 1 2 3 26 26 H 1.09002 * 109.47057 * 297.85684 * 1 2 3 27 27 H 1.09005 * 109.47002 * 57.85599 * 1 2 3 28 28 H 1.08999 * 109.46532 * 240.00160 * 2 1 3 29 29 H 1.08996 * 109.47006 * 120.00393 * 2 1 3 30 30 H 0.96706 * 114.00175 * 180.02562 * 4 3 2 31 31 H 1.08988 * 109.47282 * 85.52796 * 8 7 5 32 32 H 1.09005 * 109.46847 * 205.52904 * 8 7 5 33 33 H 1.08996 * 109.46492 * 325.52296 * 8 7 5 34 34 H 1.08989 * 109.47533 * 210.00260 * 9 7 5 35 35 H 1.09006 * 109.46888 * 330.00757 * 9 7 5 36 36 H 0.96997 * 120.00101 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.99353 * 0.02562 * 19 18 3 38 38 H 1.08003 * 119.99902 * 180.25778 * 20 19 18 39 39 H 1.08003 * 120.01061 * 179.72455 * 21 20 19 40 40 H 1.08001 * 120.00579 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5668 2.1150 1.1686 5 6 1.5344 2.1541 -1.2284 6 8 2.1359 2.0554 -2.2770 7 7 0.4140 2.9000 -1.1618 8 6 -0.3536 2.9593 0.0846 9 6 -0.0364 3.6519 -2.3358 10 6 -0.9601 2.7916 -3.1591 11 1 -1.1891 1.7857 -2.8396 12 6 -1.5137 3.2892 -4.3198 13 7 -1.2353 4.5142 -4.7086 14 14 -2.6593 2.2231 -5.3399 15 1 -2.8099 0.8961 -4.6905 16 1 -3.9880 2.8786 -5.4394 17 1 -2.0909 2.0471 -6.7005 18 6 3.5471 1.4424 -0.0040 19 6 4.2365 0.4031 -0.6005 20 6 5.6187 0.4048 -0.6088 21 6 6.3125 1.4405 -0.0114 22 6 5.6232 2.4780 0.5903 23 17 6.4937 3.7793 1.3401 24 6 4.2395 2.4784 0.5936 25 1 -0.3634 -1.0269 -0.0384 26 1 -0.3633 0.4802 0.9086 27 1 -0.3633 0.5468 -0.8702 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8520 3.0367 1.2347 31 1 0.0634 3.7308 0.7318 32 1 -1.3935 3.1965 -0.1400 33 1 -0.3019 1.9946 0.5893 34 1 -0.5663 4.5477 -2.0124 35 1 0.8266 3.9374 -2.9374 36 1 -1.6244 4.8641 -5.5253 37 1 3.6950 -0.4084 -1.0639 38 1 6.1569 -0.4053 -1.0786 39 1 7.3925 1.4395 -0.0140 40 1 3.7007 3.2877 1.0638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281950431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:09 Heat of formation + Delta-G solvation = -48.946759 kcal Electronic energy + Delta-G solvation = -24475.615194 eV Core-core repulsion = 20896.074569 eV Total energy + Delta-G solvation = -3579.540625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73673 -38.75187 -36.81932 -36.41428 -34.87309 -33.27662 -32.53844 -31.18714 -30.63158 -27.87151 -27.07029 -25.21460 -23.59815 -22.89275 -22.15124 -20.94869 -19.18319 -18.06659 -16.76309 -16.57021 -15.86999 -15.79052 -15.34937 -14.87963 -14.68747 -14.47831 -14.06119 -13.83768 -13.56758 -13.37437 -13.16261 -12.69653 -12.43041 -12.26611 -12.13977 -11.90667 -11.65831 -11.52750 -11.36819 -11.23429 -11.02094 -10.95906 -10.89521 -10.73078 -10.60551 -10.19025 -10.07632 -9.60354 -9.11376 -8.80580 -8.58025 -8.45312 -7.64413 -6.05846 -4.10450 1.07461 1.14666 2.00664 3.21904 3.28553 3.36248 3.39549 3.44423 3.92177 4.12862 4.42209 4.45560 4.66624 4.87046 4.94053 5.02011 5.15089 5.28554 5.28859 5.40179 5.49012 5.61075 5.70356 5.81275 5.92033 6.02337 6.04164 6.07565 6.18247 6.27762 6.39428 6.45417 6.56948 6.66486 6.99301 7.36381 7.40589 7.53368 7.90383 8.21056 8.36949 8.85550 9.01273 9.54538 11.02347 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.003984 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.060036 B = 7027.128484 C = 7309.569219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C 0.160 3.840 4 O -0.540 6.540 5 C 0.485 3.515 6 O -0.529 6.529 7 N -0.590 5.590 8 C 0.067 3.933 9 C 0.244 3.756 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.075 4.075 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.032 4.032 23 Cl -0.075 7.075 24 C -0.100 4.100 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.378 0.622 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -6.839 14.344 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.139 4.139 3 C 0.116 3.884 4 O -0.348 6.348 5 C 0.270 3.730 6 O -0.406 6.406 7 N -0.322 5.322 8 C -0.076 4.076 9 C 0.125 3.875 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.077 4.077 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.059 4.059 23 Cl -0.046 7.046 24 C -0.119 4.119 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.228 0.772 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.956 -7.175 13.813 19.034 hybrid contribution -0.340 0.348 -0.730 0.878 sum 10.616 -6.827 13.082 18.178 Atomic orbital electron populations 1.22081 0.94389 1.02101 1.03554 1.21540 0.97640 0.91526 1.03188 1.20351 0.88536 0.94952 0.84565 1.86669 1.75376 1.29540 1.43252 1.20666 0.81992 0.80785 0.89597 1.90705 1.57939 1.61400 1.30574 1.48169 1.23394 1.46387 1.14201 1.22324 0.96093 1.03265 0.85942 1.19339 0.95652 0.90863 0.81692 1.21437 1.27267 1.00066 1.07414 0.92353 1.24936 0.96793 0.95118 0.97272 1.69937 1.44376 1.15228 1.23864 0.86457 0.80310 0.80510 0.80240 1.19761 1.20962 1.20895 1.20013 0.95017 0.94761 0.97863 1.21170 0.94179 0.98176 0.97014 1.21099 0.94067 0.98316 0.98953 1.21038 1.00346 0.93360 0.98343 1.20758 0.92122 0.91732 1.01242 1.98363 1.76537 1.48762 1.80924 1.20687 0.92163 0.98722 1.00345 0.92495 0.91056 0.90864 0.89776 0.90326 0.77238 0.94271 0.92002 0.88621 0.94929 0.94104 0.92774 0.84854 0.84875 0.85028 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.28 37.16 0.31 -1.96 16 2 C -0.10 -1.36 4.50 -26.73 -0.12 -1.48 16 3 C 0.16 2.39 0.81 -92.92 -0.08 2.32 16 4 O -0.54 -6.87 8.70 -35.23 -0.31 -7.17 16 5 C 0.49 9.77 5.57 -10.99 -0.06 9.71 16 6 O -0.53 -13.00 16.02 5.55 0.09 -12.91 16 7 N -0.59 -12.20 2.45 -182.95 -0.45 -12.65 16 8 C 0.07 1.07 8.21 59.85 0.49 1.57 16 9 C 0.24 6.32 5.11 -5.19 -0.03 6.29 16 10 C -0.52 -14.67 9.39 -34.44 -0.32 -14.99 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 C -0.08 -1.07 4.38 -104.63 -0.46 -1.53 16 19 C -0.09 -1.14 9.08 -39.58 -0.36 -1.50 16 20 C -0.11 -1.19 10.05 -39.59 -0.40 -1.59 16 21 C -0.11 -1.27 9.83 -39.55 -0.39 -1.65 16 22 C -0.03 -0.40 6.32 -39.50 -0.25 -0.65 16 23 Cl -0.07 -0.85 28.96 -51.86 -1.50 -2.35 16 24 C -0.10 -1.33 9.10 -39.55 -0.36 -1.69 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.91 6.06 -51.93 -0.31 0.59 16 27 H 0.07 1.27 6.23 -51.93 -0.32 0.95 16 28 H 0.08 1.13 6.50 -51.93 -0.34 0.80 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.38 4.07 6.36 45.56 0.29 4.36 16 31 H 0.04 0.53 7.06 -51.94 -0.37 0.16 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.10 1.38 2.42 -51.93 -0.13 1.25 16 34 H 0.03 0.86 8.07 -51.94 -0.42 0.44 16 35 H 0.04 1.20 7.47 -51.93 -0.39 0.81 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.61 6.15 -52.48 -0.32 1.29 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.13 1.50 6.49 -52.49 -0.34 1.16 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -32.87 335.74 -7.81 -40.68 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.30 Total: 3.97 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.12 Total: -5.54 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.29 Total: -38.46 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.22 Total: -20.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.87 -7.81 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281950431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.265 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds