Wall clock time and date at job start Tue Mar 31 2020 09:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 O 1.42896 * 109.46804 * 60.15880 * 3 2 1 5 5 C 1.50703 * 109.47201 * 300.16469 * 3 2 1 6 6 O 1.21284 * 119.99667 * 275.48449 * 5 3 2 7 7 N 1.34770 * 120.00203 * 95.48040 * 5 3 2 8 8 C 1.46504 * 120.00143 * 356.59929 * 7 5 3 9 9 C 1.46506 * 120.00144 * 176.58882 * 7 5 3 10 10 C 1.50705 * 109.46632 * 90.00022 * 9 7 5 11 11 H 1.07993 * 120.00028 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99467 * 179.97438 * 10 9 7 13 13 N 1.31509 * 120.00381 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99654 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47218 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47269 * 120.00049 * 14 12 10 17 17 H 1.48498 * 109.47052 * 240.00593 * 14 12 10 18 18 C 1.50701 * 109.47194 * 180.16130 * 3 2 1 19 19 C 1.38253 * 119.99072 * 29.72416 * 18 3 2 20 20 C 1.38218 * 120.02475 * 179.76807 * 19 18 3 21 21 C 1.38236 * 120.01260 * 0.50752 * 20 19 18 22 22 C 1.38331 * 119.98793 * 359.74824 * 21 20 19 23 23 Cl 1.73593 * 120.01703 * 180.02562 * 22 21 20 24 24 C 1.38194 * 119.99038 * 210.00085 * 18 3 2 25 25 H 1.08999 * 109.47333 * 177.85720 * 1 2 3 26 26 H 1.09002 * 109.47057 * 297.85684 * 1 2 3 27 27 H 1.09005 * 109.47002 * 57.85599 * 1 2 3 28 28 H 1.08999 * 109.46532 * 240.00160 * 2 1 3 29 29 H 1.08996 * 109.47006 * 120.00393 * 2 1 3 30 30 H 0.96706 * 114.00175 * 180.02562 * 4 3 2 31 31 H 1.08988 * 109.47282 * 85.52796 * 8 7 5 32 32 H 1.09005 * 109.46847 * 205.52904 * 8 7 5 33 33 H 1.08996 * 109.46492 * 325.52296 * 8 7 5 34 34 H 1.08989 * 109.47533 * 210.00260 * 9 7 5 35 35 H 1.09006 * 109.46888 * 330.00757 * 9 7 5 36 36 H 0.96997 * 120.00101 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.99353 * 0.02562 * 19 18 3 38 38 H 1.08003 * 119.99902 * 180.25778 * 20 19 18 39 39 H 1.08003 * 120.01061 * 179.72455 * 21 20 19 40 40 H 1.08001 * 120.00579 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5668 2.1150 1.1686 5 6 1.5344 2.1541 -1.2284 6 8 2.1359 2.0554 -2.2770 7 7 0.4140 2.9000 -1.1618 8 6 -0.3536 2.9593 0.0846 9 6 -0.0364 3.6519 -2.3358 10 6 -0.9601 2.7916 -3.1591 11 1 -1.1891 1.7857 -2.8396 12 6 -1.5137 3.2892 -4.3198 13 7 -1.2353 4.5142 -4.7086 14 14 -2.6593 2.2231 -5.3399 15 1 -2.8099 0.8961 -4.6905 16 1 -3.9880 2.8786 -5.4394 17 1 -2.0909 2.0471 -6.7005 18 6 3.5471 1.4424 -0.0040 19 6 4.2365 0.4031 -0.6005 20 6 5.6187 0.4048 -0.6088 21 6 6.3125 1.4405 -0.0114 22 6 5.6232 2.4780 0.5903 23 17 6.4937 3.7793 1.3401 24 6 4.2395 2.4784 0.5936 25 1 -0.3634 -1.0269 -0.0384 26 1 -0.3633 0.4802 0.9086 27 1 -0.3633 0.5468 -0.8702 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8520 3.0367 1.2347 31 1 0.0634 3.7308 0.7318 32 1 -1.3935 3.1965 -0.1400 33 1 -0.3019 1.9946 0.5893 34 1 -0.5663 4.5477 -2.0124 35 1 0.8266 3.9374 -2.9374 36 1 -1.6244 4.8641 -5.5253 37 1 3.6950 -0.4084 -1.0639 38 1 6.1569 -0.4053 -1.0786 39 1 7.3925 1.4395 -0.0140 40 1 3.7007 3.2877 1.0638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281950431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:09 Heat of formation + Delta-G solvation = -69.935825 kcal Electronic energy + Delta-G solvation = -24476.525348 eV Core-core repulsion = 20896.074569 eV Total energy + Delta-G solvation = -3580.450779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99258 -39.92291 -38.07942 -37.41364 -36.57363 -34.62475 -34.36126 -32.17988 -31.59212 -29.84915 -28.32332 -26.69358 -25.30661 -24.02948 -23.11660 -22.34223 -20.47626 -19.23304 -18.68039 -18.08252 -17.31680 -16.94257 -16.63519 -16.40569 -16.06029 -15.79304 -15.08598 -14.96897 -14.89337 -14.64649 -14.39836 -14.10653 -13.94059 -13.73733 -13.57354 -13.34172 -12.93013 -12.84855 -12.67927 -12.61094 -12.46996 -12.34023 -12.26404 -12.14685 -11.93299 -11.79515 -11.64417 -11.32864 -10.65847 -10.30827 -9.91500 -9.69294 -9.39706 -8.23123 -6.37595 0.11023 0.20783 1.08450 1.35544 1.37486 1.49365 1.68136 2.21234 2.39169 2.65802 3.05224 3.06631 3.36125 3.61931 3.71485 3.86603 4.09348 4.17485 4.28840 4.40489 4.44988 4.59752 4.65147 4.74508 4.77870 4.81264 4.93370 5.00452 5.08213 5.15764 5.18604 5.21004 5.32285 5.40343 5.44872 5.57830 5.75975 5.82280 6.04859 6.34622 6.69754 6.77206 7.25674 7.41456 8.84174 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.003984 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.060036 B = 7027.128484 C = 7309.569219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.101 4.101 3 C 0.180 3.820 4 O -0.532 6.532 5 C 0.480 3.520 6 O -0.583 6.583 7 N -0.595 5.595 8 C 0.065 3.935 9 C 0.258 3.742 10 C -0.537 4.537 11 H 0.054 0.946 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.282 1.282 18 C -0.097 4.097 19 C -0.102 4.102 20 C -0.104 4.104 21 C -0.111 4.111 22 C -0.044 4.044 23 Cl -0.068 7.068 24 C -0.113 4.113 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.387 0.613 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.022 0.978 35 H -0.005 1.005 36 H 0.267 0.733 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.265 -8.497 15.814 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.139 4.139 3 C 0.135 3.865 4 O -0.341 6.341 5 C 0.267 3.733 6 O -0.464 6.464 7 N -0.325 5.325 8 C -0.077 4.077 9 C 0.137 3.863 10 C -0.576 4.576 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.208 1.208 18 C -0.099 4.099 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.071 4.071 23 Cl -0.039 7.039 24 C -0.131 4.131 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.239 0.761 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.174 0.826 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.304 -8.829 15.342 21.002 hybrid contribution -0.376 0.912 -1.152 1.517 sum 10.927 -7.917 14.190 19.582 Atomic orbital electron populations 1.22036 0.94699 1.02919 1.02155 1.21614 0.97276 0.90558 1.04417 1.20046 0.89215 0.94951 0.82264 1.86638 1.75357 1.30331 1.41726 1.21715 0.80897 0.79820 0.90898 1.90659 1.59364 1.63110 1.33220 1.48145 1.24301 1.45976 1.14105 1.22589 0.95156 1.05556 0.84362 1.18794 0.93294 0.91029 0.83173 1.21697 1.27643 1.00056 1.08164 0.92753 1.25850 0.98399 0.96424 0.98466 1.70055 1.45508 1.16913 1.24486 0.85390 0.78463 0.78959 0.78159 1.18941 1.19499 1.20766 1.20028 0.94406 0.95953 0.99468 1.21405 0.95290 0.98266 0.96998 1.21458 0.93459 0.99017 0.98261 1.21402 1.01676 0.92657 0.97162 1.20936 0.92113 0.92393 1.01614 1.98363 1.76234 1.48509 1.80808 1.20856 0.92835 0.98811 1.00624 0.90493 0.89785 0.94868 0.90243 0.87330 0.76113 0.91231 0.93083 0.86500 0.95997 0.98645 0.92453 0.84395 0.81874 0.82612 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 8.28 71.98 0.60 -3.60 16 2 C -0.10 -2.54 4.50 30.59 0.14 -2.40 16 3 C 0.18 5.20 0.81 -12.28 -0.01 5.19 16 4 O -0.53 -12.43 8.70 -148.98 -1.30 -13.73 16 5 C 0.48 19.72 5.57 87.66 0.49 20.21 16 6 O -0.58 -29.90 16.02 -3.04 -0.05 -29.95 16 7 N -0.59 -25.24 2.45 -851.12 -2.08 -27.32 16 8 C 0.06 2.04 8.21 127.77 1.05 3.09 16 9 C 0.26 14.07 5.11 85.63 0.44 14.51 16 10 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 11 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 12 C 0.01 0.43 5.46 84.66 0.46 0.89 16 13 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 14 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.10 -2.68 4.38 -19.87 -0.09 -2.77 16 19 C -0.10 -2.53 9.08 22.27 0.20 -2.33 16 20 C -0.10 -2.11 10.05 22.26 0.22 -1.88 16 21 C -0.11 -2.25 9.83 22.29 0.22 -2.03 16 22 C -0.04 -1.03 6.32 22.32 0.14 -0.89 16 23 Cl -0.07 -1.45 28.96 -2.72 -0.08 -1.53 16 24 C -0.11 -2.87 9.10 22.29 0.20 -2.66 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.93 6.06 -2.39 -0.01 1.91 16 27 H 0.03 1.13 6.23 -2.38 -0.01 1.12 16 28 H 0.08 2.07 6.50 -2.39 -0.02 2.05 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.39 7.60 6.36 -74.05 -0.47 7.12 16 31 H 0.07 1.77 7.06 -2.39 -0.02 1.75 16 32 H 0.05 1.72 8.04 -2.38 -0.02 1.70 16 33 H 0.12 3.19 2.42 -2.39 -0.01 3.19 16 34 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.00 -0.29 7.47 -2.38 -0.02 -0.30 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.14 3.20 6.15 -2.91 -0.02 3.18 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.14 3.07 6.49 -2.91 -0.02 3.05 16 Total: -1.00 -74.06 335.74 3.72 -70.34 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.61 Total: 16.95 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.30 Total: -5.52 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.80 Total: -83.67 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.35 Total: -43.67 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -74.06 3.72 -70.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281950431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.404 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds