Wall clock time and date at job start Tue Mar 31 2020 09:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47136 * 86.56988 * 3 2 1 5 5 C 1.36956 * 119.99759 * 265.00101 * 4 3 2 6 6 H 1.08003 * 119.99698 * 196.33922 * 5 4 3 7 7 C 1.38991 * 120.00029 * 16.32970 * 5 4 3 8 8 N 1.31401 * 120.00153 * 22.43032 * 7 5 4 9 9 Si 1.86800 * 119.99925 * 202.43046 * 7 5 4 10 10 H 1.48498 * 109.47191 * 60.00060 * 9 7 5 11 11 H 1.48500 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47048 * 299.99976 * 9 7 5 13 13 C 1.34771 * 120.00033 * 84.99955 * 4 3 2 14 14 O 1.21653 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.47217 * 120.00462 * 359.97438 * 13 4 3 16 16 C 1.37285 * 128.58277 * 90.15103 * 15 13 4 17 17 C 1.50699 * 126.73137 * 359.97438 * 16 15 13 18 18 O 1.33508 * 106.53199 * 180.22894 * 16 15 13 19 19 N 1.20643 * 113.39766 * 359.75635 * 18 16 15 20 20 C 1.30841 * 112.12263 * 0.02562 * 19 18 16 21 21 C 1.48384 * 127.44037 * 179.97438 * 20 19 18 22 22 C 1.39746 * 120.90354 * 325.01966 * 21 20 19 23 23 C 1.38030 * 119.01655 * 180.23370 * 22 21 20 24 24 N 1.31891 * 120.88506 * 359.45190 * 23 22 21 25 25 C 1.31892 * 122.00380 * 0.59115 * 24 23 22 26 26 C 1.38032 * 120.88509 * 359.67691 * 25 24 23 27 27 H 4.40637 * 5.51456 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47302 * 326.56838 * 3 2 1 29 29 H 1.09004 * 109.47032 * 206.56264 * 3 2 1 30 30 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47583 * 180.26253 * 17 16 15 32 32 H 1.08997 * 109.47529 * 300.26575 * 17 16 15 33 33 H 1.09008 * 109.47201 * 60.26344 * 17 16 15 34 34 H 1.08003 * 120.49408 * 359.96013 * 22 21 20 35 35 H 1.08004 * 119.55941 * 179.75090 * 23 22 21 36 36 H 1.08007 * 119.56274 * 179.70150 * 25 24 23 37 37 H 1.07997 * 120.49368 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0818 -1.3788 5 6 3.4606 -1.2977 -1.9181 6 1 4.0584 -1.3471 -2.8162 7 6 3.0225 -2.4679 -1.3095 8 7 1.9736 -2.4442 -0.5185 9 14 3.9250 -4.0745 -1.6162 10 1 5.3348 -3.9435 -1.1686 11 1 3.2636 -5.1663 -0.8573 12 1 3.8934 -4.3909 -3.0668 13 6 3.2626 1.0389 -2.1164 14 8 3.6677 0.9703 -3.2614 15 6 2.9114 2.3458 -1.5369 16 6 3.7155 3.2226 -0.8518 17 6 5.1764 3.0416 -0.5289 18 8 2.9481 4.2643 -0.5229 19 7 1.8084 4.1591 -0.9043 20 6 1.6065 3.0396 -1.5508 21 6 0.3396 2.5664 -2.1615 22 6 -0.8929 2.8461 -1.5652 23 6 -2.0469 2.3828 -2.1642 24 7 -1.9970 1.6948 -3.2883 25 6 -0.8549 1.4090 -3.8828 26 6 0.3465 1.8293 -3.3487 27 1 -1.0499 0.0002 -0.0001 28 1 3.0097 -0.8568 0.5662 29 1 3.0089 0.9200 0.4596 30 1 1.6676 -3.2610 -0.0941 31 1 5.5352 3.9068 0.0285 32 1 5.3069 2.1422 0.0727 33 1 5.7438 2.9450 -1.4546 34 1 -0.9415 3.4127 -0.6470 35 1 -3.0040 2.5904 -1.7087 36 1 -0.8596 0.8388 -4.8000 37 1 1.2780 1.5921 -3.8409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367180151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:01 Heat of formation + Delta-G solvation = 136.998989 kcal Electronic energy + Delta-G solvation = -25995.554720 eV Core-core repulsion = 22322.969814 eV Total energy + Delta-G solvation = -3672.584906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.53501 -39.75806 -38.65820 -35.30871 -34.37079 -33.32561 -32.11242 -31.38979 -31.09272 -30.98927 -27.83817 -26.61799 -25.51568 -24.35770 -23.39768 -22.72557 -20.46694 -19.29938 -18.03282 -17.54912 -17.28574 -16.76702 -16.44137 -15.78061 -15.70592 -15.32388 -14.74227 -14.35187 -14.21726 -13.62817 -13.57900 -13.40074 -13.20787 -13.08248 -12.81128 -12.43909 -12.34267 -12.16986 -11.74466 -11.58593 -11.15830 -11.05256 -10.65636 -10.56410 -10.40646 -9.48636 -9.41299 -9.32939 -9.10182 -9.00429 -8.94084 -8.88912 -8.63193 -8.05285 -6.49873 -4.01671 1.03315 1.39940 1.69653 2.49930 3.02152 3.14714 3.17387 3.20566 3.42222 3.75061 3.99814 4.01358 4.07579 4.11028 4.60007 4.66755 4.79795 4.87698 5.10502 5.24034 5.33441 5.36248 5.38286 5.51546 5.55684 5.57002 5.76352 5.81946 5.87340 6.03400 6.09495 6.19172 6.29071 6.51855 6.59844 6.89243 6.95651 7.40725 7.84534 8.16837 8.23418 8.43573 8.77935 8.92558 9.15438 9.69486 10.49589 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.006881 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.579082 B = 4068.323574 C = 5330.528480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.114 4.114 3 C 0.234 3.766 4 N -0.414 5.414 5 C -0.322 4.322 6 H 0.109 0.891 7 C 0.037 3.963 8 N -0.849 5.849 9 Si 0.923 3.077 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.512 3.488 14 O -0.573 6.573 15 C -0.186 4.186 16 C -0.016 4.016 17 C -0.071 4.071 18 O 0.099 5.901 19 N -0.350 5.350 20 C 0.080 3.920 21 C 0.038 3.962 22 C -0.142 4.142 23 C 0.092 3.908 24 N -0.481 5.481 25 C 0.102 3.898 26 C -0.130 4.130 27 H 0.195 0.805 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.272 0.728 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 7.952 3.377 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.115 4.115 3 C 0.110 3.890 4 N -0.130 5.130 5 C -0.449 4.449 6 H 0.127 0.873 7 C -0.169 4.169 8 N -0.485 5.485 9 Si 0.749 3.251 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.299 3.701 14 O -0.458 6.458 15 C -0.193 4.193 16 C -0.079 4.079 17 C -0.128 4.128 18 O 0.033 5.967 19 N -0.053 5.053 20 C -0.080 4.080 21 C 0.028 3.972 22 C -0.162 4.162 23 C -0.065 4.065 24 N -0.190 5.190 25 C -0.054 4.054 26 C -0.152 4.152 27 H 0.212 0.788 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.556 8.492 2.904 9.109 hybrid contribution 1.012 -1.358 0.191 1.704 sum -0.544 7.134 3.095 7.795 Atomic orbital electron populations 1.24107 0.95140 1.06020 1.01446 1.22877 0.94048 0.95704 0.98909 1.18238 0.84771 1.00751 0.85203 1.43607 1.53843 1.05684 1.09858 1.19653 1.31734 0.80631 1.12868 0.87347 1.25346 0.94920 0.99681 0.96984 1.70107 1.19005 1.29442 1.29994 0.86045 0.79652 0.80458 0.78932 1.19663 1.20923 1.19644 1.16512 0.86152 0.81793 0.85620 1.90661 1.51797 1.85937 1.17394 1.22349 0.91984 0.99816 1.05191 1.24557 0.96433 0.87515 0.99375 1.20376 0.84607 1.03926 1.03911 1.84421 1.14522 1.38982 1.58806 1.73848 0.97296 1.19353 1.14815 1.22814 0.93916 0.91379 0.99882 1.17805 0.89211 0.96279 0.93855 1.22074 0.92227 1.00923 1.01025 1.22557 0.97804 0.94314 0.91812 1.67568 1.30012 1.12013 1.09441 1.22617 0.87029 0.96498 0.99257 1.22374 1.01109 0.96383 0.95286 0.78825 0.87110 0.92578 0.91745 0.89778 0.88824 0.88727 0.84895 0.82730 0.82443 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.19 18.94 29.55 0.56 -4.63 16 2 C -0.11 -2.52 11.39 -37.12 -0.42 -2.95 16 3 C 0.23 5.05 4.92 -6.83 -0.03 5.02 16 4 N -0.41 -9.88 2.59 -119.22 -0.31 -10.19 16 5 C -0.32 -8.28 9.33 -14.98 -0.14 -8.42 16 6 H 0.11 2.92 7.37 -52.48 -0.39 2.53 16 7 C 0.04 0.91 4.85 -17.46 -0.08 0.82 16 8 N -0.85 -21.18 9.45 55.50 0.52 -20.65 16 9 Si 0.92 19.31 29.61 -169.99 -5.03 14.28 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.51 11.94 6.31 -12.62 -0.08 11.86 16 14 O -0.57 -15.06 16.16 5.23 0.08 -14.98 16 15 C -0.19 -3.70 4.40 -102.69 -0.45 -4.15 16 16 C -0.02 -0.26 7.26 -34.66 -0.25 -0.51 16 17 C -0.07 -0.84 10.32 36.00 0.37 -0.47 16 18 O 0.10 1.62 11.05 18.62 0.21 1.82 16 19 N -0.35 -6.28 12.06 34.61 0.42 -5.86 16 20 C 0.08 1.53 7.08 -80.21 -0.57 0.96 16 21 C 0.04 0.70 5.76 -104.59 -0.60 0.10 16 22 C -0.14 -2.26 9.72 -39.09 -0.38 -2.64 16 23 C 0.09 1.37 11.17 -17.60 -0.20 1.17 16 24 N -0.48 -8.03 10.34 -13.33 -0.14 -8.17 16 25 C 0.10 1.76 11.17 -17.60 -0.20 1.56 16 26 C -0.13 -2.49 9.44 -39.09 -0.37 -2.85 16 27 H 0.19 3.53 7.80 -54.09 -0.42 3.11 16 28 H 0.11 2.48 6.44 -51.93 -0.33 2.14 16 29 H 0.06 1.07 6.87 -51.93 -0.36 0.71 16 30 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 35 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.16 2.32 8.06 -52.48 -0.42 1.89 16 37 H 0.15 3.04 6.77 -52.49 -0.36 2.68 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -30.55 336.81 -5.54 -36.09 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.53 Total: 7.72 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.84 Total: -5.14 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.49 Total: -44.87 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.29 Total: -13.15 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.55 -5.54 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367180151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.089 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds