Wall clock time and date at job start Tue Mar 31 2020 09:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47136 * 86.56988 * 3 2 1 5 5 C 1.36956 * 119.99759 * 265.00101 * 4 3 2 6 6 H 1.08003 * 119.99698 * 196.33922 * 5 4 3 7 7 C 1.38991 * 120.00029 * 16.32970 * 5 4 3 8 8 N 1.31401 * 120.00153 * 22.43032 * 7 5 4 9 9 Si 1.86800 * 119.99925 * 202.43046 * 7 5 4 10 10 H 1.48498 * 109.47191 * 60.00060 * 9 7 5 11 11 H 1.48500 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47048 * 299.99976 * 9 7 5 13 13 C 1.34771 * 120.00033 * 84.99955 * 4 3 2 14 14 O 1.21653 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.47217 * 120.00462 * 359.97438 * 13 4 3 16 16 C 1.37285 * 128.58277 * 90.15103 * 15 13 4 17 17 C 1.50699 * 126.73137 * 359.97438 * 16 15 13 18 18 O 1.33508 * 106.53199 * 180.22894 * 16 15 13 19 19 N 1.20643 * 113.39766 * 359.75635 * 18 16 15 20 20 C 1.30841 * 112.12263 * 0.02562 * 19 18 16 21 21 C 1.48384 * 127.44037 * 179.97438 * 20 19 18 22 22 C 1.39746 * 120.90354 * 325.01966 * 21 20 19 23 23 C 1.38030 * 119.01655 * 180.23370 * 22 21 20 24 24 N 1.31891 * 120.88506 * 359.45190 * 23 22 21 25 25 C 1.31892 * 122.00380 * 0.59115 * 24 23 22 26 26 C 1.38032 * 120.88509 * 359.67691 * 25 24 23 27 27 H 4.40637 * 5.51456 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47302 * 326.56838 * 3 2 1 29 29 H 1.09004 * 109.47032 * 206.56264 * 3 2 1 30 30 H 0.97002 * 120.00177 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47583 * 180.26253 * 17 16 15 32 32 H 1.08997 * 109.47529 * 300.26575 * 17 16 15 33 33 H 1.09008 * 109.47201 * 60.26344 * 17 16 15 34 34 H 1.08003 * 120.49408 * 359.96013 * 22 21 20 35 35 H 1.08004 * 119.55941 * 179.75090 * 23 22 21 36 36 H 1.08007 * 119.56274 * 179.70150 * 25 24 23 37 37 H 1.07997 * 120.49368 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0818 -1.3788 5 6 3.4606 -1.2977 -1.9181 6 1 4.0584 -1.3471 -2.8162 7 6 3.0225 -2.4679 -1.3095 8 7 1.9736 -2.4442 -0.5185 9 14 3.9250 -4.0745 -1.6162 10 1 5.3348 -3.9435 -1.1686 11 1 3.2636 -5.1663 -0.8573 12 1 3.8934 -4.3909 -3.0668 13 6 3.2626 1.0389 -2.1164 14 8 3.6677 0.9703 -3.2614 15 6 2.9114 2.3458 -1.5369 16 6 3.7155 3.2226 -0.8518 17 6 5.1764 3.0416 -0.5289 18 8 2.9481 4.2643 -0.5229 19 7 1.8084 4.1591 -0.9043 20 6 1.6065 3.0396 -1.5508 21 6 0.3396 2.5664 -2.1615 22 6 -0.8929 2.8461 -1.5652 23 6 -2.0469 2.3828 -2.1642 24 7 -1.9970 1.6948 -3.2883 25 6 -0.8549 1.4090 -3.8828 26 6 0.3465 1.8293 -3.3487 27 1 -1.0499 0.0002 -0.0001 28 1 3.0097 -0.8568 0.5662 29 1 3.0089 0.9200 0.4596 30 1 1.6676 -3.2610 -0.0941 31 1 5.5352 3.9068 0.0285 32 1 5.3069 2.1422 0.0727 33 1 5.7438 2.9450 -1.4546 34 1 -0.9415 3.4127 -0.6470 35 1 -3.0040 2.5904 -1.7087 36 1 -0.8596 0.8388 -4.8000 37 1 1.2780 1.5921 -3.8409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367180151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:00 Heat of formation + Delta-G solvation = 119.670908 kcal Electronic energy + Delta-G solvation = -25996.306122 eV Core-core repulsion = 22322.969814 eV Total energy + Delta-G solvation = -3673.336308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93873 -41.08034 -40.43598 -37.14970 -35.78062 -34.68662 -33.88042 -33.10373 -32.50934 -32.28409 -29.09747 -28.34959 -27.18599 -25.84289 -24.78938 -24.16370 -21.90536 -20.85242 -19.79823 -19.00183 -18.76276 -18.29900 -18.07861 -17.28735 -17.06233 -16.79038 -16.38136 -16.07163 -15.83962 -15.04297 -14.91430 -14.77520 -14.58487 -14.39385 -14.17392 -14.01653 -13.89037 -13.56605 -13.46202 -12.87592 -12.82029 -12.54487 -12.43593 -12.19505 -11.86038 -11.24202 -11.18884 -10.78050 -10.69528 -10.64662 -10.29661 -10.27023 -10.18927 -9.92012 -8.37962 -5.97750 -0.33756 0.09829 0.32809 1.06432 1.32277 1.44419 1.53403 1.66130 1.88246 2.06616 2.30046 2.37109 2.62234 2.75340 2.97136 3.16236 3.29747 3.46450 3.77025 3.87738 3.91025 3.94181 4.06024 4.07631 4.24015 4.42393 4.52534 4.53818 4.61366 4.73903 4.78263 4.85258 4.93702 5.10606 5.18282 5.32858 5.43883 5.60653 5.96361 6.34994 6.87723 7.03728 7.06069 7.10853 7.29550 7.85683 8.59725 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.006881 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.579082 B = 4068.323574 C = 5330.528480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.144 4.144 3 C 0.239 3.761 4 N -0.421 5.421 5 C -0.355 4.355 6 H 0.084 0.916 7 C 0.011 3.989 8 N -0.862 5.862 9 Si 0.984 3.016 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.519 3.481 14 O -0.616 6.616 15 C -0.229 4.229 16 C 0.014 3.986 17 C -0.074 4.074 18 O 0.115 5.885 19 N -0.351 5.351 20 C 0.070 3.930 21 C 0.022 3.978 22 C -0.139 4.139 23 C 0.103 3.897 24 N -0.489 5.489 25 C 0.099 3.901 26 C -0.155 4.155 27 H 0.219 0.781 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.274 0.726 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 8.601 5.139 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.145 4.145 3 C 0.116 3.884 4 N -0.136 5.136 5 C -0.481 4.481 6 H 0.102 0.898 7 C -0.194 4.194 8 N -0.497 5.497 9 Si 0.807 3.193 10 H -0.187 1.187 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.307 3.693 14 O -0.504 6.504 15 C -0.237 4.237 16 C -0.049 4.049 17 C -0.131 4.131 18 O 0.048 5.952 19 N -0.054 5.054 20 C -0.089 4.089 21 C 0.013 3.987 22 C -0.160 4.160 23 C -0.053 4.053 24 N -0.198 5.198 25 C -0.056 4.056 26 C -0.177 4.177 27 H 0.236 0.764 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.215 0.785 36 H 0.189 0.811 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.256 9.152 4.690 10.528 hybrid contribution 1.190 -1.485 -0.340 1.933 sum -1.066 7.667 4.350 8.879 Atomic orbital electron populations 1.24706 0.95837 1.04972 1.00215 1.23143 0.94632 0.96709 1.00026 1.18226 0.84930 1.01289 0.83935 1.43701 1.53830 1.05344 1.10746 1.19583 1.33080 0.82243 1.13234 0.89808 1.25992 0.95116 1.01899 0.96437 1.70189 1.19310 1.30178 1.30068 0.85143 0.79006 0.76875 0.78234 1.18654 1.20035 1.20448 1.16820 0.84656 0.82816 0.84977 1.90611 1.53485 1.86938 1.19349 1.22036 0.93712 0.99455 1.08471 1.25186 0.97500 0.85804 0.96436 1.20674 0.81544 1.06217 1.04650 1.84421 1.14134 1.38541 1.58131 1.73817 0.97943 1.18707 1.14905 1.22954 0.94086 0.91608 1.00259 1.18006 0.90167 0.96645 0.93910 1.22321 0.91426 1.00750 1.01486 1.23261 0.99179 0.92214 0.90690 1.67682 1.29267 1.12618 1.10280 1.22823 0.86667 0.96337 0.99792 1.22208 1.00557 0.98511 0.96408 0.76415 0.88232 0.90333 0.91549 0.85568 0.88065 0.88654 0.82994 0.78461 0.81052 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.68 18.94 74.32 1.41 -8.28 16 2 C -0.14 -6.32 11.39 31.12 0.35 -5.97 16 3 C 0.24 10.39 4.92 84.57 0.42 10.81 16 4 N -0.42 -20.68 2.59 -649.35 -1.68 -22.36 16 5 C -0.35 -18.90 9.33 84.07 0.78 -18.11 16 6 H 0.08 4.78 7.37 -2.91 -0.02 4.76 16 7 C 0.01 0.54 4.85 84.94 0.41 0.95 16 8 N -0.86 -43.02 9.45 21.67 0.20 -42.81 16 9 Si 0.98 39.81 29.61 68.60 2.03 41.84 16 10 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 11 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.52 25.09 6.31 86.60 0.55 25.64 16 14 O -0.62 -34.27 16.16 -4.20 -0.07 -34.33 16 15 C -0.23 -9.18 4.40 -18.61 -0.08 -9.27 16 16 C 0.01 0.44 7.26 25.46 0.18 0.62 16 17 C -0.07 -1.59 10.32 71.24 0.74 -0.85 16 18 O 0.11 3.51 11.05 76.87 0.85 4.36 16 19 N -0.35 -12.13 12.06 -44.99 -0.54 -12.67 16 20 C 0.07 2.69 7.08 44.53 0.32 3.00 16 21 C 0.02 0.81 5.76 -19.85 -0.11 0.69 16 22 C -0.14 -4.18 9.72 22.59 0.22 -3.96 16 23 C 0.10 2.79 11.17 84.63 0.95 3.74 16 24 N -0.49 -15.56 10.34 -196.08 -2.03 -17.59 16 25 C 0.10 3.43 11.17 84.63 0.95 4.38 16 26 C -0.16 -6.14 9.44 22.59 0.21 -5.93 16 27 H 0.22 7.41 7.80 -4.42 -0.03 7.37 16 28 H 0.10 4.50 6.44 -2.39 -0.02 4.48 16 29 H 0.08 2.97 6.87 -2.39 -0.02 2.95 16 30 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.17 5.17 8.06 -2.91 -0.02 5.14 16 37 H 0.11 5.15 6.77 -2.91 -0.02 5.13 16 Total: -1.00 -68.17 336.81 7.16 -61.01 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 1.11 Total: 25.10 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 7.28 Total: -2.53 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.05 Total: -95.44 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: 0.78 Total: -29.97 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -68.17 7.16 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367180151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.676 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds