Wall clock time and date at job start Tue Mar 31 2020 09:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46886 * 108.39331 * 3 2 1 5 5 C 1.36950 * 120.00093 * 264.66808 * 4 3 2 6 6 H 1.08002 * 119.99669 * 196.53595 * 5 4 3 7 7 C 1.38987 * 120.00314 * 16.53148 * 5 4 3 8 8 N 1.31408 * 119.99374 * 22.48108 * 7 5 4 9 9 Si 1.86798 * 120.00219 * 202.48183 * 7 5 4 10 10 H 1.48496 * 109.47085 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46802 * 120.00349 * 9 7 5 12 12 H 1.48503 * 109.46972 * 239.99952 * 9 7 5 13 13 C 1.34783 * 119.99934 * 84.66459 * 4 3 2 14 14 O 1.21636 * 119.99924 * 180.02562 * 13 4 3 15 15 C 1.47224 * 119.99903 * 0.02562 * 13 4 3 16 16 C 1.37272 * 128.58886 * 89.96909 * 15 13 4 17 17 C 1.50706 * 126.72869 * 0.04515 * 16 15 13 18 18 O 1.33509 * 106.54013 * 180.02562 * 16 15 13 19 19 N 1.20657 * 113.38629 * 359.74720 * 18 16 15 20 20 C 1.30826 * 112.12576 * 0.43189 * 19 18 16 21 21 C 1.48377 * 127.44155 * 179.86503 * 20 19 18 22 22 C 1.39299 * 119.72032 * 334.65297 * 21 20 19 23 23 C 1.38458 * 119.06552 * 179.74988 * 22 21 20 24 24 C 1.38740 * 118.50154 * 0.51640 * 23 22 21 25 25 C 1.38323 * 119.35745 * 359.48545 * 24 23 22 26 26 N 1.31699 * 120.89246 * 0.27143 * 25 24 23 27 27 H 4.40644 * 5.51461 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47416 * 348.39339 * 3 2 1 29 29 H 1.09003 * 109.46696 * 228.39236 * 3 2 1 30 30 H 0.97007 * 119.99345 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47305 * 90.00204 * 17 16 15 32 32 H 1.09009 * 109.46766 * 209.99897 * 17 16 15 33 33 H 1.08999 * 109.47308 * 329.99044 * 17 16 15 34 34 H 1.07998 * 120.46929 * 0.03205 * 22 21 20 35 35 H 1.08003 * 120.74938 * 180.27643 * 23 22 21 36 36 H 1.08001 * 120.31634 * 179.75813 * 24 23 22 37 37 H 1.07997 * 119.54994 * 180.25209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4367 -1.3107 5 6 3.4667 -0.4916 -2.2611 6 1 4.0670 -0.2027 -3.1112 7 6 3.0318 -1.8053 -2.1316 8 7 1.9801 -2.0793 -1.3930 9 14 3.9424 -3.1812 -3.0074 10 1 5.0840 -2.6133 -3.7685 11 1 4.4502 -4.1540 -2.0067 12 1 3.0172 -3.8704 -3.9424 13 6 3.2558 1.7515 -1.5812 14 8 3.6606 2.1136 -2.6696 15 6 2.8988 2.7494 -0.5594 16 6 3.6984 3.3120 0.4042 17 6 5.1599 3.0296 0.6402 18 8 2.9277 4.1586 1.0910 19 7 1.7896 4.2010 0.6925 20 6 1.5905 3.3927 -0.3167 21 6 0.3258 3.1740 -1.0613 22 6 -0.8947 3.4205 -0.4369 23 6 -2.0663 3.2168 -1.1461 24 6 -1.9781 2.7625 -2.4540 25 6 -0.7321 2.5382 -3.0113 26 7 0.3669 2.7449 -2.3157 27 1 -1.0501 0.0001 0.0002 28 1 3.0099 -1.0058 0.2067 29 1 3.0090 0.6833 0.7684 30 1 1.6763 -2.9962 -1.3029 31 1 5.7632 3.7174 0.0477 32 1 5.3896 3.1632 1.6974 33 1 5.3839 2.0041 0.3466 34 1 -0.9266 3.7699 0.5845 35 1 -3.0274 3.4036 -0.6901 36 1 -2.8734 2.5900 -3.0328 37 1 -0.6597 2.1885 -4.0305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376749727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:54 Heat of formation + Delta-G solvation = 142.398887 kcal Electronic energy + Delta-G solvation = -26011.852032 eV Core-core repulsion = 22339.501283 eV Total energy + Delta-G solvation = -3672.350749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.44290 -39.76609 -38.46224 -35.11561 -33.89885 -33.20418 -32.23437 -31.97371 -31.17441 -30.41042 -27.73626 -26.48908 -25.37400 -24.27134 -23.39408 -22.67375 -20.41309 -19.16460 -17.91157 -17.46032 -17.19209 -16.72232 -16.37194 -15.92756 -15.67503 -15.22429 -14.58840 -14.22562 -14.11402 -13.65229 -13.61435 -13.22347 -13.01578 -12.91293 -12.72329 -12.30084 -12.22710 -12.10696 -11.63517 -11.60546 -11.05619 -10.94041 -10.49416 -10.42063 -10.28944 -9.63292 -9.38527 -9.27360 -9.10309 -8.95060 -8.86534 -8.61237 -8.42093 -7.87520 -6.35052 -3.85081 0.94714 1.50877 1.79375 2.53560 3.09938 3.22625 3.26005 3.32225 3.59699 3.83419 3.93522 4.09556 4.14541 4.20025 4.60904 4.87328 4.99218 5.01059 5.04062 5.19711 5.27498 5.42427 5.45665 5.50469 5.61887 5.68230 5.77213 5.88104 5.91836 6.04686 6.19401 6.25852 6.30872 6.35700 6.71745 6.84951 7.03368 7.55376 8.02524 8.27174 8.41398 8.51673 8.86463 9.10914 9.33022 9.90000 10.65644 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.006890 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.904110 B = 4062.944976 C = 5325.194097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.104 4.104 3 C 0.234 3.766 4 N -0.425 5.425 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.033 3.967 8 N -0.857 5.857 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.533 3.467 14 O -0.560 6.560 15 C -0.168 4.168 16 C -0.025 4.025 17 C -0.069 4.069 18 O 0.100 5.900 19 N -0.350 5.350 20 C 0.088 3.912 21 C 0.208 3.792 22 C -0.144 4.144 23 C -0.080 4.080 24 C -0.169 4.169 25 C 0.112 3.888 26 N -0.435 5.435 27 H 0.192 0.808 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.267 0.733 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 6.648 5.847 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.105 4.105 3 C 0.111 3.889 4 N -0.142 5.142 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.320 3.680 14 O -0.443 6.443 15 C -0.176 4.176 16 C -0.088 4.088 17 C -0.126 4.126 18 O 0.033 5.967 19 N -0.054 5.054 20 C -0.072 4.072 21 C 0.070 3.930 22 C -0.165 4.165 23 C -0.106 4.106 24 C -0.190 4.190 25 C -0.046 4.046 26 N -0.144 5.144 27 H 0.210 0.790 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.357 7.320 5.639 9.831 hybrid contribution -0.828 -1.320 -0.496 1.635 sum -4.185 6.001 5.143 8.943 Atomic orbital electron populations 1.24036 0.95097 1.05738 1.03024 1.22987 0.94143 0.95888 0.97523 1.18223 0.84613 1.01073 0.85009 1.43539 1.55242 1.03584 1.11879 1.19686 1.30836 0.87686 1.05629 0.87524 1.25288 0.95144 0.98885 0.97900 1.70137 1.19505 1.20208 1.39576 0.85978 0.79826 0.80566 0.79048 1.19094 1.20622 1.20943 1.16393 0.84675 0.81365 0.85593 1.90645 1.50657 1.79427 1.23530 1.22386 0.91686 1.03616 0.99929 1.24539 0.96436 0.94018 0.93800 1.20354 0.84532 1.04185 1.03561 1.84406 1.14415 1.50078 1.47772 1.73786 0.97606 1.20282 1.13742 1.22507 0.93589 0.96294 0.94762 1.18143 0.88630 0.96070 0.90116 1.21951 0.92303 1.01060 1.01180 1.21412 0.98207 0.96752 0.94230 1.22212 0.99406 1.01084 0.96278 1.22743 0.87113 0.94985 0.99807 1.67599 1.32413 1.08428 1.05935 0.79032 0.87184 0.92740 0.92226 0.89199 0.89745 0.88639 0.84844 0.84759 0.84797 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.63 19.05 29.55 0.56 -5.07 16 2 C -0.10 -2.41 11.39 -37.12 -0.42 -2.83 16 3 C 0.23 5.33 4.91 -6.83 -0.03 5.30 16 4 N -0.42 -10.75 2.60 -119.22 -0.31 -11.06 16 5 C -0.31 -8.43 9.33 -14.99 -0.14 -8.57 16 6 H 0.11 3.04 7.38 -52.49 -0.39 2.66 16 7 C 0.03 0.83 4.85 -17.46 -0.08 0.75 16 8 N -0.86 -22.21 9.48 55.50 0.53 -21.68 16 9 Si 0.92 20.06 29.61 -169.99 -5.03 15.03 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.53 13.42 6.85 -12.61 -0.09 13.34 16 14 O -0.56 -16.05 16.75 5.25 0.09 -15.96 16 15 C -0.17 -3.62 4.42 -102.69 -0.45 -4.07 16 16 C -0.03 -0.44 7.26 -34.66 -0.25 -0.69 16 17 C -0.07 -0.88 10.32 36.01 0.37 -0.51 16 18 O 0.10 1.71 11.05 18.61 0.21 1.91 16 19 N -0.35 -6.54 11.98 34.61 0.41 -6.13 16 20 C 0.09 1.82 7.20 -80.21 -0.58 1.24 16 21 C 0.21 4.13 6.55 -82.95 -0.54 3.59 16 22 C -0.14 -2.31 9.77 -39.11 -0.38 -2.69 16 23 C -0.08 -1.06 10.17 -39.31 -0.40 -1.46 16 24 C -0.17 -2.28 10.11 -39.36 -0.40 -2.68 16 25 C 0.11 1.93 11.18 -17.58 -0.20 1.74 16 26 N -0.43 -9.24 9.79 -9.78 -0.10 -9.34 16 27 H 0.19 3.56 7.80 -54.09 -0.42 3.14 16 28 H 0.11 2.58 6.44 -51.93 -0.33 2.24 16 29 H 0.05 1.10 6.88 -51.93 -0.36 0.74 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -33.69 339.35 -5.72 -39.41 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.59 Total: 5.32 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.03 Total: -2.62 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.54 Total: -48.21 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.29 Total: -14.04 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.69 -5.72 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376749727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.808 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds