Wall clock time and date at job start Tue Mar 31 2020 09:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46886 * 108.39331 * 3 2 1 5 5 C 1.36950 * 120.00093 * 264.66808 * 4 3 2 6 6 H 1.08002 * 119.99669 * 196.53595 * 5 4 3 7 7 C 1.38987 * 120.00314 * 16.53148 * 5 4 3 8 8 N 1.31408 * 119.99374 * 22.48108 * 7 5 4 9 9 Si 1.86798 * 120.00219 * 202.48183 * 7 5 4 10 10 H 1.48496 * 109.47085 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46802 * 120.00349 * 9 7 5 12 12 H 1.48503 * 109.46972 * 239.99952 * 9 7 5 13 13 C 1.34783 * 119.99934 * 84.66459 * 4 3 2 14 14 O 1.21636 * 119.99924 * 180.02562 * 13 4 3 15 15 C 1.47224 * 119.99903 * 0.02562 * 13 4 3 16 16 C 1.37272 * 128.58886 * 89.96909 * 15 13 4 17 17 C 1.50706 * 126.72869 * 0.04515 * 16 15 13 18 18 O 1.33509 * 106.54013 * 180.02562 * 16 15 13 19 19 N 1.20657 * 113.38629 * 359.74720 * 18 16 15 20 20 C 1.30826 * 112.12576 * 0.43189 * 19 18 16 21 21 C 1.48377 * 127.44155 * 179.86503 * 20 19 18 22 22 C 1.39299 * 119.72032 * 334.65297 * 21 20 19 23 23 C 1.38458 * 119.06552 * 179.74988 * 22 21 20 24 24 C 1.38740 * 118.50154 * 0.51640 * 23 22 21 25 25 C 1.38323 * 119.35745 * 359.48545 * 24 23 22 26 26 N 1.31699 * 120.89246 * 0.27143 * 25 24 23 27 27 H 4.40644 * 5.51461 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47416 * 348.39339 * 3 2 1 29 29 H 1.09003 * 109.46696 * 228.39236 * 3 2 1 30 30 H 0.97007 * 119.99345 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47305 * 90.00204 * 17 16 15 32 32 H 1.09009 * 109.46766 * 209.99897 * 17 16 15 33 33 H 1.08999 * 109.47308 * 329.99044 * 17 16 15 34 34 H 1.07998 * 120.46929 * 0.03205 * 22 21 20 35 35 H 1.08003 * 120.74938 * 180.27643 * 23 22 21 36 36 H 1.08001 * 120.31634 * 179.75813 * 24 23 22 37 37 H 1.07997 * 119.54994 * 180.25209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4367 -1.3107 5 6 3.4667 -0.4916 -2.2611 6 1 4.0670 -0.2027 -3.1112 7 6 3.0318 -1.8053 -2.1316 8 7 1.9801 -2.0793 -1.3930 9 14 3.9424 -3.1812 -3.0074 10 1 5.0840 -2.6133 -3.7685 11 1 4.4502 -4.1540 -2.0067 12 1 3.0172 -3.8704 -3.9424 13 6 3.2558 1.7515 -1.5812 14 8 3.6606 2.1136 -2.6696 15 6 2.8988 2.7494 -0.5594 16 6 3.6984 3.3120 0.4042 17 6 5.1599 3.0296 0.6402 18 8 2.9277 4.1586 1.0910 19 7 1.7896 4.2010 0.6925 20 6 1.5905 3.3927 -0.3167 21 6 0.3258 3.1740 -1.0613 22 6 -0.8947 3.4205 -0.4369 23 6 -2.0663 3.2168 -1.1461 24 6 -1.9781 2.7625 -2.4540 25 6 -0.7321 2.5382 -3.0113 26 7 0.3669 2.7449 -2.3157 27 1 -1.0501 0.0001 0.0002 28 1 3.0099 -1.0058 0.2067 29 1 3.0090 0.6833 0.7684 30 1 1.6763 -2.9962 -1.3029 31 1 5.7632 3.7174 0.0477 32 1 5.3896 3.1632 1.6974 33 1 5.3839 2.0041 0.3466 34 1 -0.9266 3.7699 0.5845 35 1 -3.0274 3.4036 -0.6901 36 1 -2.8734 2.5900 -3.0328 37 1 -0.6597 2.1885 -4.0305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376749727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:53 Heat of formation + Delta-G solvation = 121.399046 kcal Electronic energy + Delta-G solvation = -26012.762654 eV Core-core repulsion = 22339.501283 eV Total energy + Delta-G solvation = -3673.261370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.106 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.89026 -41.01937 -40.34591 -37.06484 -35.34147 -34.60460 -33.83574 -33.44303 -33.02857 -31.69293 -29.05632 -28.30955 -27.12025 -25.74818 -24.70932 -24.12722 -21.85211 -20.78092 -19.75696 -18.95835 -18.71240 -18.25403 -18.03253 -17.38232 -16.96666 -16.73965 -16.25119 -16.02270 -15.81137 -15.07232 -14.95874 -14.62244 -14.50734 -14.11703 -14.01318 -13.98258 -13.80876 -13.57182 -13.46602 -12.81707 -12.76388 -12.50611 -12.34026 -12.14235 -11.72913 -11.20620 -11.15508 -10.86253 -10.71950 -10.62666 -10.37568 -10.22307 -9.85995 -9.78133 -8.32743 -5.91314 -0.32651 0.31832 0.38692 1.11589 1.33201 1.43882 1.57421 1.71017 1.94230 2.11200 2.32619 2.39279 2.52637 2.86537 3.01801 3.19689 3.30897 3.75842 3.80419 3.94081 3.98015 4.07174 4.12339 4.17396 4.31290 4.45002 4.54882 4.63190 4.66535 4.76346 4.80042 4.87529 5.10575 5.13013 5.17168 5.33529 5.48148 5.70773 6.03213 6.43264 7.00854 7.10992 7.11600 7.13118 7.37096 7.96375 8.66307 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.006890 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.904110 B = 4062.944976 C = 5325.194097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.138 4.138 3 C 0.240 3.760 4 N -0.429 5.429 5 C -0.348 4.348 6 H 0.078 0.922 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.985 3.015 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.282 1.282 13 C 0.538 3.462 14 O -0.613 6.613 15 C -0.220 4.220 16 C 0.005 3.995 17 C -0.071 4.071 18 O 0.115 5.885 19 N -0.351 5.351 20 C 0.077 3.923 21 C 0.172 3.828 22 C -0.144 4.144 23 C -0.067 4.067 24 C -0.148 4.148 25 C 0.083 3.917 26 N -0.491 5.491 27 H 0.221 0.779 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.272 0.728 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 6.514 7.448 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.146 5.146 5 C -0.475 4.475 6 H 0.096 0.904 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.808 3.192 10 H -0.197 1.197 11 H -0.188 1.188 12 H -0.208 1.208 13 C 0.326 3.674 14 O -0.499 6.499 15 C -0.228 4.228 16 C -0.058 4.058 17 C -0.128 4.128 18 O 0.049 5.951 19 N -0.055 5.055 20 C -0.082 4.082 21 C 0.035 3.965 22 C -0.165 4.165 23 C -0.093 4.093 24 C -0.168 4.168 25 C -0.076 4.076 26 N -0.201 5.201 27 H 0.238 0.762 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.164 0.836 35 H 0.201 0.799 36 H 0.195 0.805 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.065 7.182 7.287 11.416 hybrid contribution -0.392 -1.244 -0.999 1.643 sum -5.457 5.938 6.288 10.227 Atomic orbital electron populations 1.24695 0.95853 1.04378 1.01545 1.23213 0.94713 0.97160 0.98871 1.18191 0.84970 1.00770 0.84328 1.43630 1.54952 1.03618 1.12384 1.19581 1.32430 0.89214 1.06276 0.90407 1.25977 0.95327 1.00040 0.98393 1.70222 1.19657 1.20814 1.39699 0.85023 0.78308 0.77643 0.78191 1.19664 1.18784 1.20826 1.16721 0.83229 0.81766 0.85648 1.90579 1.52935 1.80381 1.26047 1.22080 0.93777 1.05263 1.01687 1.25176 0.97528 0.91575 0.91508 1.20647 0.81504 1.03898 1.06760 1.84400 1.14060 1.49492 1.47191 1.73738 0.98148 1.20038 1.13551 1.22831 0.93996 0.96186 0.95189 1.18316 0.89561 0.98335 0.90245 1.22183 0.92023 1.00467 1.01827 1.21963 0.99075 0.94535 0.93703 1.22612 0.99155 0.98380 0.96633 1.23057 0.88140 0.96159 1.00216 1.67447 1.34927 1.10389 1.07363 0.76249 0.88346 0.90659 0.91807 0.87477 0.85363 0.89660 0.83632 0.79950 0.80496 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.43 19.05 74.32 1.42 -9.02 16 2 C -0.14 -6.43 11.39 31.13 0.35 -6.07 16 3 C 0.24 11.18 4.91 84.57 0.42 11.60 16 4 N -0.43 -22.68 2.60 -649.34 -1.69 -24.37 16 5 C -0.35 -19.74 9.33 84.07 0.78 -18.96 16 6 H 0.08 4.76 7.38 -2.91 -0.02 4.74 16 7 C 0.01 0.34 4.85 84.94 0.41 0.75 16 8 N -0.87 -45.17 9.48 21.67 0.21 -44.97 16 9 Si 0.98 41.66 29.61 68.60 2.03 43.69 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.54 28.49 6.85 86.60 0.59 29.08 16 14 O -0.61 -37.56 16.75 -4.14 -0.07 -37.63 16 15 C -0.22 -9.72 4.42 -18.61 -0.08 -9.81 16 16 C 0.01 0.18 7.26 25.46 0.18 0.37 16 17 C -0.07 -1.70 10.32 71.24 0.74 -0.97 16 18 O 0.12 3.79 11.05 76.85 0.85 4.64 16 19 N -0.35 -12.95 11.98 -44.99 -0.54 -13.49 16 20 C 0.08 3.25 7.20 44.53 0.32 3.57 16 21 C 0.17 6.89 6.55 41.98 0.27 7.16 16 22 C -0.14 -4.37 9.77 22.58 0.22 -4.15 16 23 C -0.07 -1.52 10.17 22.44 0.23 -1.30 16 24 C -0.15 -3.56 10.11 22.41 0.23 -3.33 16 25 C 0.08 2.86 11.18 84.73 0.95 3.80 16 26 N -0.49 -21.56 9.79 -184.84 -1.81 -23.37 16 27 H 0.22 7.63 7.80 -4.41 -0.03 7.60 16 28 H 0.10 4.72 6.44 -2.39 -0.02 4.70 16 29 H 0.08 3.09 6.88 -2.39 -0.02 3.07 16 30 H 0.27 13.34 8.31 -92.70 -0.77 12.57 16 31 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.16 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -78.63 339.35 7.12 -71.50 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.11 Total: 21.26 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.03 Total: 2.73 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -3.83 Total: -106.20 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: 0.78 Total: -32.99 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -78.63 7.12 -71.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376749727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.904 kcal (2) G-P(sol) polarization free energy of solvation -78.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds