Wall clock time and date at job start Tue Mar 31 2020 09:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20762 * 119.99809 * 2 1 4 4 C 1.50697 * 120.00207 * 180.02562 * 2 1 3 5 5 S 1.81398 * 109.47010 * 179.97438 * 4 2 1 6 6 C 1.81401 * 102.99825 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47089 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.39471 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.36110 * 126.21626 * 0.14378 * 10 9 7 12 12 C 1.39762 * 107.82869 * 180.26709 * 11 10 9 13 13 C 1.50694 * 125.84077 * 179.72419 * 12 11 10 14 14 N 1.30855 * 108.31847 * 359.75600 * 12 11 10 15 15 N 1.35266 * 126.21450 * 180.02562 * 10 9 7 16 16 C 1.46491 * 126.04623 * 359.97438 * 15 10 9 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 10 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 H 1.09005 * 109.46666 * 239.99521 * 1 2 3 26 26 H 1.08996 * 109.47200 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47044 * 119.99807 * 1 2 3 28 28 H 1.09000 * 109.47475 * 59.99467 * 4 2 1 29 29 H 1.08999 * 109.46909 * 299.99535 * 4 2 1 30 30 H 1.08994 * 109.47451 * 59.99940 * 6 5 4 31 31 H 1.09002 * 109.47152 * 299.99572 * 6 5 4 32 32 H 0.97004 * 120.00013 * 359.97438 * 9 7 6 33 33 H 1.07999 * 126.09101 * 0.05355 * 11 10 9 34 34 H 1.09003 * 109.47188 * 270.01578 * 13 12 11 35 35 H 1.08998 * 109.47119 * 30.01737 * 13 12 11 36 36 H 1.09003 * 109.47108 * 150.01312 * 13 12 11 37 37 H 1.09004 * 109.47166 * 149.71543 * 16 15 10 38 38 H 1.08994 * 109.47507 * 29.71250 * 16 15 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 16 4.0440 -0.9735 -0.0012 6 6 4.7682 -2.6366 -0.0011 7 6 6.2715 -2.5300 -0.0009 8 8 6.8021 -1.4393 -0.0014 9 7 7.0263 -3.6466 -0.0013 10 6 8.4175 -3.5478 -0.0017 11 6 9.1419 -2.3955 0.0010 12 6 10.4961 -2.7413 -0.0068 13 6 11.6533 -1.7761 -0.0128 14 7 10.5872 -4.0467 -0.0086 15 7 9.2920 -4.5798 -0.0026 16 6 8.9455 -6.0032 -0.0028 17 6 8.8346 -6.4934 1.4179 18 1 9.0047 -5.8126 2.2389 19 6 8.5098 -7.8095 1.6697 20 7 8.4077 -8.2360 2.9096 21 14 8.2150 -8.9869 0.2497 22 1 9.4960 -9.6349 -0.1301 23 1 7.2380 -10.0261 0.6631 24 1 7.6765 -8.2356 -0.9125 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.9973 -1.8763 -0.8908 29 1 1.9973 -1.8769 0.8892 30 1 4.4419 -3.1751 -0.8908 31 1 4.4425 -3.1747 0.8892 32 1 6.6020 -4.5189 -0.0013 33 1 8.7417 -1.3924 0.0047 34 1 11.9263 -1.5426 -1.0419 35 1 11.3652 -0.8603 0.5034 36 1 12.5053 -2.2271 0.4959 37 1 9.7215 -6.5659 -0.5218 38 1 7.9921 -6.1450 -0.5116 39 1 8.1796 -9.1620 3.0867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518655812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:12 Heat of formation + Delta-G solvation = 14.016952 kcal Electronic energy + Delta-G solvation = -22471.047643 eV Core-core repulsion = 18928.573787 eV Total energy + Delta-G solvation = -3542.473856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97017 -39.67498 -39.21222 -34.86948 -33.80879 -32.22612 -31.95853 -30.75830 -29.43722 -28.76130 -27.82300 -26.34356 -22.71502 -21.79411 -20.41088 -19.84467 -19.38069 -17.29253 -17.18635 -16.67216 -16.53136 -16.24969 -16.14243 -15.68049 -14.96403 -14.80727 -14.61383 -14.08106 -13.97195 -13.55600 -13.16660 -13.14954 -12.93012 -12.80096 -12.59986 -12.55891 -12.47417 -12.29987 -11.91972 -11.82608 -11.18797 -10.88836 -10.55910 -10.29249 -10.27756 -10.13797 -10.07044 -9.80573 -9.62151 -8.90780 -8.00925 -7.85702 -7.53383 -6.37963 -4.42621 1.02872 1.52432 2.10702 2.16252 2.70369 2.98816 3.04154 3.09943 3.14143 3.50954 3.56383 3.62629 4.09244 4.46034 4.55036 4.55772 4.73163 4.85613 4.88347 4.93076 4.94655 4.94908 5.27242 5.48995 5.57175 5.99611 6.01628 6.08221 6.18409 6.26855 6.31173 6.59900 6.70183 7.03991 7.15207 7.38505 7.47223 7.69400 8.08310 8.23138 8.52818 8.68751 9.16408 10.74253 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003415 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.909118 B = 8197.857630 C =10069.182420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.369 3.631 3 O -0.433 6.433 4 C -0.182 4.182 5 S -0.121 6.121 6 C -0.139 4.139 7 C 0.537 3.463 8 O -0.491 6.491 9 N -0.636 5.636 10 C 0.304 3.696 11 C -0.290 4.290 12 C 0.056 3.944 13 C -0.063 4.063 14 N -0.282 5.282 15 N -0.344 5.344 16 C 0.230 3.770 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.080 3.920 20 N -0.883 5.883 21 Si 0.874 3.126 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.416 0.584 33 H 0.164 0.836 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 10.102 -7.876 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.242 3.758 3 O -0.304 6.304 4 C -0.330 4.330 5 S 0.105 5.895 6 C -0.291 4.291 7 C 0.322 3.678 8 O -0.364 6.364 9 N -0.284 5.284 10 C 0.082 3.918 11 C -0.322 4.322 12 C -0.109 4.109 13 C -0.122 4.122 14 N -0.107 5.107 15 N -0.129 5.129 16 C 0.110 3.890 17 C -0.584 4.584 18 H 0.100 0.900 19 C -0.125 4.125 20 N -0.519 5.519 21 Si 0.700 3.300 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.252 0.748 33 H 0.181 0.819 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.526 11.109 -7.755 19.144 hybrid contribution -1.790 -2.387 -0.455 3.018 sum -15.316 8.721 -8.210 19.444 Atomic orbital electron populations 1.22257 0.92892 1.05441 1.04814 1.23943 0.91968 0.88587 0.71342 1.90499 1.71564 1.34318 1.34048 1.24272 0.98538 1.02655 1.07584 1.88185 0.97818 1.05437 1.98078 1.23517 0.95755 1.01894 1.07903 1.19467 0.87544 0.83881 0.76953 1.90706 1.72809 1.26434 1.46416 1.42595 1.03153 1.10424 1.72229 1.17847 0.81060 0.89915 1.02949 1.21309 0.91419 0.98175 1.21255 1.22065 0.95232 0.92310 1.01323 1.20042 0.93998 0.96018 1.02138 1.77374 0.98091 1.09362 1.25827 1.48893 1.01863 1.06292 1.55812 1.19939 0.96293 0.73014 0.99706 1.21201 1.50058 0.96835 0.90338 0.90020 1.24831 0.94284 0.97560 0.95802 1.69873 1.46501 1.16883 1.18652 0.86901 0.79190 0.81519 0.82413 1.19428 1.20487 1.19062 0.88678 0.89477 0.88729 0.86619 0.86505 0.86668 0.86363 0.74773 0.81874 0.91263 0.90937 0.91359 0.93130 0.94349 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.76 10.26 36.01 0.37 -0.39 16 2 C 0.37 2.94 7.29 -29.03 -0.21 2.73 16 3 O -0.43 -5.55 16.59 6.00 0.10 -5.45 16 4 C -0.18 -1.24 6.36 36.00 0.23 -1.01 16 5 S -0.12 -1.46 20.01 -107.50 -2.15 -3.61 16 6 C -0.14 -1.44 6.42 36.01 0.23 -1.21 16 7 C 0.54 8.22 7.81 -10.98 -0.09 8.13 16 8 O -0.49 -9.12 12.99 5.55 0.07 -9.05 16 9 N -0.64 -10.58 5.41 -11.46 -0.06 -10.64 16 10 C 0.30 6.28 7.66 -153.16 -1.17 5.11 16 11 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 12 C 0.06 1.12 7.21 -82.44 -0.59 0.52 16 13 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 14 N -0.28 -6.45 12.56 33.65 0.42 -6.03 16 15 N -0.34 -7.82 3.60 -61.58 -0.22 -8.04 16 16 C 0.23 5.29 5.08 -5.20 -0.03 5.27 16 17 C -0.55 -14.71 9.94 -34.44 -0.34 -15.06 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.88 -25.31 13.96 55.43 0.77 -24.54 16 21 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.35 6.54 56.52 0.37 -4.98 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.12 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.12 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.42 6.03 7.96 -40.82 -0.32 5.71 16 33 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 1.17 7.58 -51.93 -0.39 0.78 16 38 H 0.04 0.79 6.54 -51.93 -0.34 0.46 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -36.06 352.54 -7.31 -43.37 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.18 Total: 4.93 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.71 Total: -0.74 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.91 Total: -49.25 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.17 Total: -14.49 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.15 Total: -3.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.06 -7.31 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518655812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.386 kcal (2) G-P(sol) polarization free energy of solvation -36.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds