Wall clock time and date at job start Tue Mar 31 2020 09:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20762 * 119.99809 * 2 1 4 4 C 1.50697 * 120.00207 * 180.02562 * 2 1 3 5 5 S 1.81398 * 109.47010 * 179.97438 * 4 2 1 6 6 C 1.81401 * 102.99825 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47089 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.39471 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.36110 * 126.21626 * 0.14378 * 10 9 7 12 12 C 1.39762 * 107.82869 * 180.26709 * 11 10 9 13 13 C 1.50694 * 125.84077 * 179.72419 * 12 11 10 14 14 N 1.30855 * 108.31847 * 359.75600 * 12 11 10 15 15 N 1.35266 * 126.21450 * 180.02562 * 10 9 7 16 16 C 1.46491 * 126.04623 * 359.97438 * 15 10 9 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 10 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 H 1.09005 * 109.46666 * 239.99521 * 1 2 3 26 26 H 1.08996 * 109.47200 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47044 * 119.99807 * 1 2 3 28 28 H 1.09000 * 109.47475 * 59.99467 * 4 2 1 29 29 H 1.08999 * 109.46909 * 299.99535 * 4 2 1 30 30 H 1.08994 * 109.47451 * 59.99940 * 6 5 4 31 31 H 1.09002 * 109.47152 * 299.99572 * 6 5 4 32 32 H 0.97004 * 120.00013 * 359.97438 * 9 7 6 33 33 H 1.07999 * 126.09101 * 0.05355 * 11 10 9 34 34 H 1.09003 * 109.47188 * 270.01578 * 13 12 11 35 35 H 1.08998 * 109.47119 * 30.01737 * 13 12 11 36 36 H 1.09003 * 109.47108 * 150.01312 * 13 12 11 37 37 H 1.09004 * 109.47166 * 149.71543 * 16 15 10 38 38 H 1.08994 * 109.47507 * 29.71250 * 16 15 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 16 4.0440 -0.9735 -0.0012 6 6 4.7682 -2.6366 -0.0011 7 6 6.2715 -2.5300 -0.0009 8 8 6.8021 -1.4393 -0.0014 9 7 7.0263 -3.6466 -0.0013 10 6 8.4175 -3.5478 -0.0017 11 6 9.1419 -2.3955 0.0010 12 6 10.4961 -2.7413 -0.0068 13 6 11.6533 -1.7761 -0.0128 14 7 10.5872 -4.0467 -0.0086 15 7 9.2920 -4.5798 -0.0026 16 6 8.9455 -6.0032 -0.0028 17 6 8.8346 -6.4934 1.4179 18 1 9.0047 -5.8126 2.2389 19 6 8.5098 -7.8095 1.6697 20 7 8.4077 -8.2360 2.9096 21 14 8.2150 -8.9869 0.2497 22 1 9.4960 -9.6349 -0.1301 23 1 7.2380 -10.0261 0.6631 24 1 7.6765 -8.2356 -0.9125 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.9973 -1.8763 -0.8908 29 1 1.9973 -1.8769 0.8892 30 1 4.4419 -3.1751 -0.8908 31 1 4.4425 -3.1747 0.8892 32 1 6.6020 -4.5189 -0.0013 33 1 8.7417 -1.3924 0.0047 34 1 11.9263 -1.5426 -1.0419 35 1 11.3652 -0.8603 0.5034 36 1 12.5053 -2.2271 0.4959 37 1 9.7215 -6.5659 -0.5218 38 1 7.9921 -6.1450 -0.5116 39 1 8.1796 -9.1620 3.0867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518655812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:11 Heat of formation + Delta-G solvation = -11.630945 kcal Electronic energy + Delta-G solvation = -22472.159819 eV Core-core repulsion = 18928.573787 eV Total energy + Delta-G solvation = -3543.586032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49188 -40.62140 -40.30825 -36.34608 -35.58953 -34.01495 -32.53490 -31.88965 -30.96903 -29.42512 -29.01895 -28.03333 -24.46932 -23.21162 -21.39095 -21.15935 -20.63806 -19.27118 -18.61976 -17.95960 -17.57828 -17.09037 -16.84656 -16.57832 -16.46743 -16.14224 -15.63328 -15.57031 -15.29628 -14.84736 -14.48185 -14.29117 -14.13359 -13.82732 -13.76854 -13.53236 -13.49816 -13.16934 -13.00001 -12.94875 -12.92309 -12.58361 -12.13810 -11.85721 -11.80245 -11.55885 -11.06891 -10.95296 -10.93265 -10.80367 -9.65148 -9.13468 -8.73645 -8.42721 -6.55885 0.23398 0.70170 0.96271 1.28487 1.35707 1.38133 1.45944 1.47292 1.56053 1.98778 2.16928 2.24448 2.89043 3.05132 3.37345 3.75120 4.01895 4.13447 4.16025 4.17655 4.21995 4.44142 4.44428 4.55413 4.63556 4.66900 4.73160 4.81818 4.86928 4.91475 5.11015 5.17120 5.19654 5.22415 5.84505 5.94528 6.13177 6.29587 6.48560 6.50273 6.84796 6.95194 7.09079 8.73774 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003415 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.909118 B = 8197.857630 C =10069.182420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.367 3.633 3 O -0.495 6.495 4 C -0.161 4.161 5 S -0.220 6.220 6 C -0.114 4.114 7 C 0.533 3.467 8 O -0.527 6.527 9 N -0.633 5.633 10 C 0.304 3.696 11 C -0.308 4.308 12 C 0.060 3.940 13 C -0.062 4.062 14 N -0.326 5.326 15 N -0.365 5.365 16 C 0.237 3.763 17 C -0.555 4.555 18 H 0.021 0.979 19 C 0.025 3.975 20 N -0.935 5.935 21 Si 0.952 3.048 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.229 1.229 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.426 0.574 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.998 8.768 -9.971 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.244 3.756 3 O -0.371 6.371 4 C -0.308 4.308 5 S 0.006 5.994 6 C -0.264 4.264 7 C 0.320 3.680 8 O -0.401 6.401 9 N -0.282 5.282 10 C 0.081 3.919 11 C -0.340 4.340 12 C -0.105 4.105 13 C -0.120 4.120 14 N -0.151 5.151 15 N -0.150 5.150 16 C 0.118 3.882 17 C -0.593 4.593 18 H 0.039 0.961 19 C -0.176 4.176 20 N -0.572 5.572 21 Si 0.773 3.227 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.152 1.152 25 H 0.138 0.862 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.264 0.736 33 H 0.182 0.818 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.144 9.779 -9.856 21.293 hybrid contribution -1.028 -1.857 0.303 2.144 sum -17.172 7.922 -9.553 21.187 Atomic orbital electron populations 1.22283 0.89394 1.05716 1.07175 1.24736 0.93837 0.88063 0.68926 1.90500 1.72985 1.36341 1.37264 1.24405 0.93036 1.02753 1.10649 1.88606 1.03953 1.08413 1.98427 1.23421 0.91207 1.00851 1.10944 1.20434 0.89549 0.82790 0.75264 1.90688 1.73975 1.27775 1.47665 1.42757 1.01581 1.11605 1.72234 1.18211 0.82774 0.89470 1.01449 1.21484 0.91896 0.98283 1.22316 1.22871 0.96656 0.92151 0.98809 1.20233 0.92331 0.95444 1.04025 1.77309 0.98837 1.10772 1.28184 1.48834 1.02370 1.06388 1.57389 1.19799 0.97738 0.73539 0.97155 1.21218 1.50610 0.96504 0.90952 0.96071 1.25846 0.93314 0.99354 0.99059 1.70036 1.47759 1.17745 1.21707 0.85670 0.79169 0.78684 0.79178 1.19605 1.19702 1.15169 0.86222 0.90397 0.86006 0.83093 0.83531 0.82750 0.83785 0.73555 0.81813 0.88875 0.89137 0.90852 0.93097 0.90998 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.87 10.26 71.24 0.73 -0.14 16 2 C 0.37 5.19 7.29 29.10 0.21 5.40 16 3 O -0.49 -12.90 16.59 -1.46 -0.02 -12.93 16 4 C -0.16 -1.66 6.36 71.23 0.45 -1.21 16 5 S -0.22 -5.10 20.01 -56.49 -1.13 -6.23 16 6 C -0.11 -2.05 6.42 71.24 0.46 -1.60 16 7 C 0.53 15.81 7.81 87.66 0.68 16.50 16 8 O -0.53 -19.81 12.99 -3.07 -0.04 -19.85 16 9 N -0.63 -20.44 5.41 -308.55 -1.67 -22.11 16 10 C 0.30 12.59 7.66 131.32 1.01 13.59 16 11 C -0.31 -12.77 9.58 22.14 0.21 -12.55 16 12 C 0.06 2.44 7.21 43.07 0.31 2.75 16 13 C -0.06 -1.79 10.44 71.23 0.74 -1.04 16 14 N -0.33 -15.21 12.56 -47.45 -0.60 -15.80 16 15 N -0.36 -16.73 3.60 -348.73 -1.26 -17.99 16 16 C 0.24 10.78 5.08 85.64 0.43 11.22 16 17 C -0.55 -30.58 9.94 25.60 0.25 -30.33 16 18 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 19 C 0.02 1.32 5.47 84.66 0.46 1.78 16 20 N -0.93 -54.79 13.96 21.45 0.30 -54.49 16 21 Si 0.95 38.22 27.47 68.60 1.88 40.10 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 24 H -0.23 -7.79 6.54 99.48 0.65 -7.14 16 25 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 26 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 27 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.43 11.54 7.96 -92.70 -0.74 10.81 16 33 H 0.16 6.74 5.83 -2.91 -0.02 6.73 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 2.30 7.58 -2.38 -0.02 2.28 16 38 H 0.07 2.76 6.54 -2.39 -0.02 2.75 16 39 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -86.31 352.54 3.72 -82.59 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.29 Total: 22.33 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.96 Total: 4.37 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.22 Total: -110.39 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.06 Total: -32.78 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.88 Total: 40.10 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.13 Total: -6.23 kcal Total: -86.31 3.72 -82.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518655812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.959 kcal (2) G-P(sol) polarization free energy of solvation -86.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds