Wall clock time and date at job start Tue Mar 31 2020 09:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33633 * 122.74807 * 2 1 4 4 S 1.76199 * 107.92277 * 180.02562 * 3 2 1 5 5 C 1.70978 * 90.28436 * 359.97438 * 4 3 2 6 6 C 1.50695 * 124.92096 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47419 * 270.03075 * 6 5 4 8 8 C 1.34776 * 120.00365 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00125 * 179.71924 * 8 7 6 11 11 C 1.47432 * 125.64754 * 359.96732 * 10 8 7 12 12 C 1.55138 * 104.71922 * 155.81631 * 11 10 8 13 13 C 1.55153 * 101.48593 * 37.29696 * 12 11 10 14 14 O 1.42903 * 110.72008 * 82.69665 * 13 12 11 15 15 C 1.50700 * 110.87145 * 205.89550 * 13 12 11 16 16 H 1.08005 * 119.99933 * 118.66926 * 15 13 12 17 17 C 1.37877 * 120.00183 * 298.67646 * 15 13 12 18 18 N 1.31510 * 120.00157 * 183.38902 * 17 15 13 19 19 Si 1.86796 * 119.99842 * 3.38246 * 17 15 13 20 20 H 1.48505 * 109.47183 * 84.83938 * 19 17 15 21 21 H 1.48496 * 109.47107 * 204.83712 * 19 17 15 22 22 H 1.48501 * 109.47322 * 324.83896 * 19 17 15 23 23 C 1.47023 * 125.65054 * 180.27788 * 10 8 7 24 24 N 1.29025 * 110.16413 * 0.24703 * 5 4 3 25 25 H 1.09002 * 109.46935 * 89.99871 * 1 2 3 26 26 H 1.09001 * 109.47231 * 210.00041 * 1 2 3 27 27 H 1.09000 * 109.46651 * 330.00232 * 1 2 3 28 28 H 1.07993 * 126.04369 * 0.03553 * 3 2 1 29 29 H 1.09002 * 109.47524 * 150.02532 * 6 5 4 30 30 H 1.09006 * 109.47199 * 30.02555 * 6 5 4 31 31 H 0.97005 * 120.00152 * 359.97438 * 7 6 5 32 32 H 1.08992 * 110.36956 * 274.74284 * 11 10 8 33 33 H 1.09001 * 110.36358 * 37.07584 * 11 10 8 34 34 H 1.09004 * 111.18918 * 279.19277 * 12 11 10 35 35 H 1.09002 * 110.90060 * 155.27952 * 12 11 10 36 36 H 0.96692 * 113.99762 * 185.02513 * 14 13 12 37 37 H 0.97003 * 120.00526 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.88046 * 300.43992 * 23 10 8 39 39 H 1.08996 * 109.88520 * 61.44730 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5040 -0.9819 -0.0002 6 6 4.4835 -2.1272 -0.0010 7 7 4.8002 -2.4980 -1.3825 8 6 5.6617 -3.5046 -1.6295 9 8 6.1757 -4.1053 -0.7057 10 7 5.9487 -3.8494 -2.9003 11 6 5.3941 -3.2134 -4.1093 12 6 6.4402 -3.4974 -5.2192 13 6 6.8962 -4.9346 -4.8536 14 8 5.9831 -5.9026 -5.3745 15 6 8.2928 -5.1985 -5.3543 16 1 9.0825 -5.4304 -4.6548 17 6 8.5627 -5.1438 -6.7053 18 7 9.7653 -5.4391 -7.1481 19 14 7.2202 -4.6503 -7.9066 20 1 7.1594 -3.1694 -8.0001 21 1 7.5203 -5.2187 -9.2452 22 1 5.9135 -5.1702 -7.4297 23 6 6.8617 -4.9262 -3.3107 24 7 2.2200 -1.1084 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.8393 2.1307 0.0005 29 1 4.0436 -2.9819 0.5129 30 1 5.3963 -1.8250 0.5123 31 1 4.3898 -2.0190 -2.1195 32 1 4.4339 -3.6602 -4.3666 33 1 5.2853 -2.1396 -3.9570 34 1 7.2736 -2.7970 -5.1636 35 1 5.9769 -3.4734 -6.2056 36 1 6.1798 -6.8114 -5.1093 37 1 9.9551 -5.4010 -8.0986 38 1 7.8606 -4.7348 -2.9187 39 1 6.4956 -5.8838 -2.9406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591903999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:47 Heat of formation + Delta-G solvation = -15.277432 kcal Electronic energy + Delta-G solvation = -23270.245965 eV Core-core repulsion = 19726.501809 eV Total energy + Delta-G solvation = -3543.744156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37051 -39.82836 -37.81840 -35.05090 -34.55206 -32.44655 -32.25865 -30.32249 -28.67312 -28.13079 -27.56510 -25.04678 -23.00252 -22.49466 -20.14336 -20.08306 -19.62857 -18.42794 -17.69039 -17.36017 -16.27245 -15.68431 -15.43113 -15.15121 -14.84635 -14.78559 -14.31266 -14.16164 -13.62667 -13.36847 -13.27533 -12.99353 -12.89440 -12.73570 -12.66820 -12.38462 -12.13283 -11.65595 -11.65418 -11.36126 -11.14938 -10.60060 -10.31399 -10.15782 -10.02171 -9.88977 -9.75015 -9.15172 -9.11250 -9.04286 -8.75700 -8.52090 -8.09111 -6.22779 -4.34789 0.24513 0.97866 1.37895 2.29568 2.95080 3.26897 3.39816 3.44428 3.58135 3.64153 4.19559 4.39909 4.49830 4.75950 4.86611 5.06148 5.12161 5.13265 5.22546 5.26413 5.30553 5.46852 5.55056 5.57080 5.71629 5.82118 5.86751 6.08715 6.38111 6.45269 6.51561 6.59597 6.65556 7.08183 7.24663 7.37516 7.48081 8.16775 8.21799 8.72695 8.80764 8.88624 9.40029 10.87630 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.003040 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.902087 B = 9208.451255 C = 9555.572883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.064 3.936 3 C -0.261 4.261 4 S 0.148 5.852 5 C 0.030 3.970 6 C 0.220 3.780 7 N -0.745 5.745 8 C 0.723 3.277 9 O -0.593 6.593 10 N -0.625 5.625 11 C 0.102 3.898 12 C -0.124 4.124 13 C 0.216 3.784 14 O -0.573 6.573 15 C -0.550 4.550 16 H 0.079 0.921 17 C 0.089 3.911 18 N -0.887 5.887 19 Si 0.876 3.124 20 H -0.283 1.283 21 H -0.300 1.300 22 H -0.228 1.228 23 C 0.115 3.885 24 N -0.453 5.453 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.178 0.822 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.366 0.634 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 14.171 12.128 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.401 4.401 4 S 0.403 5.597 5 C -0.248 4.248 6 C 0.093 3.907 7 N -0.404 5.404 8 C 0.425 3.575 9 O -0.472 6.472 10 N -0.362 5.362 11 C -0.021 4.021 12 C -0.162 4.162 13 C 0.176 3.824 14 O -0.380 6.380 15 C -0.588 4.588 16 H 0.097 0.903 17 C -0.117 4.117 18 N -0.523 5.523 19 Si 0.704 3.296 20 H -0.210 1.210 21 H -0.228 1.228 22 H -0.151 1.151 23 C -0.008 4.008 24 N -0.169 5.169 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.196 0.804 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.213 0.787 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.276 14.254 12.496 24.345 hybrid contribution -1.383 0.220 -0.871 1.649 sum -16.659 14.473 11.625 24.943 Atomic orbital electron populations 1.20377 0.86892 1.03440 1.03155 1.20375 0.98460 0.86382 1.01617 1.26955 0.95488 1.04140 1.13472 1.84179 1.06711 1.02322 1.66538 1.27001 0.94085 0.98543 1.05190 1.19485 0.94425 0.92644 0.84180 1.45002 1.49699 1.38244 1.07457 1.15306 0.79629 0.80132 0.82412 1.90907 1.57186 1.56402 1.42709 1.47662 1.47972 1.37542 1.03043 1.22366 0.97936 0.96211 0.85622 1.23111 0.97761 0.98363 0.96979 1.19989 0.89463 0.86139 0.86842 1.86493 1.56323 1.18936 1.76231 1.21185 0.92655 1.51309 0.93619 0.90256 1.24950 0.95347 0.92955 0.98416 1.69925 1.20846 1.46397 1.15091 0.87071 0.85113 0.78277 0.79180 1.21010 1.22760 1.15094 1.22696 0.92479 0.88257 0.97345 1.66155 1.04436 1.31780 1.14549 0.90480 0.90422 0.90674 0.80430 0.88552 0.89257 0.76901 0.91595 0.92209 0.89266 0.90693 0.78680 0.92321 0.90825 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.31 36.01 0.37 -0.15 16 2 C 0.06 0.60 6.74 -84.22 -0.57 0.04 16 3 C -0.26 -2.04 11.13 29.12 0.32 -1.72 16 4 S 0.15 1.26 23.18 -107.50 -2.49 -1.23 16 5 C 0.03 0.32 6.76 -13.46 -0.09 0.23 16 6 C 0.22 2.64 6.25 -5.20 -0.03 2.61 16 7 N -0.75 -10.33 5.51 -66.42 -0.37 -10.69 16 8 C 0.72 13.04 8.49 -86.92 -0.74 12.30 16 9 O -0.59 -12.61 16.67 5.29 0.09 -12.52 16 10 N -0.63 -11.51 3.32 -176.09 -0.59 -12.10 16 11 C 0.10 1.67 6.58 -2.40 -0.02 1.66 16 12 C -0.12 -2.46 4.83 -24.46 -0.12 -2.58 16 13 C 0.22 4.74 0.67 -89.94 -0.06 4.68 16 14 O -0.57 -12.24 10.44 -35.23 -0.37 -12.61 16 15 C -0.55 -14.48 8.82 -34.44 -0.30 -14.78 16 16 H 0.08 2.28 7.82 -52.48 -0.41 1.87 16 17 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 18 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 19 Si 0.88 20.79 23.89 -169.99 -4.06 16.73 16 20 H -0.28 -6.50 7.08 56.52 0.40 -6.10 16 21 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.23 -5.27 5.50 56.52 0.31 -4.96 16 23 C 0.11 2.37 6.21 -3.06 -0.02 2.35 16 24 N -0.45 -5.28 10.53 -8.06 -0.08 -5.37 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.90 6.94 -40.82 -0.28 4.61 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.80 7.29 -51.93 -0.38 0.42 16 34 H 0.09 1.79 8.05 -51.93 -0.42 1.37 16 35 H 0.07 1.51 5.00 -51.93 -0.26 1.25 16 36 H 0.37 6.84 9.08 45.56 0.41 7.26 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.62 7.66 -51.93 -0.40 1.22 16 39 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.90 334.54 -7.74 -40.64 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.34 Total: 10.38 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.35 Total: 6.96 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.26 Total: -53.40 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.28 Total: -25.13 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.06 Total: 16.73 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.90 -7.74 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591903999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.365 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds