Wall clock time and date at job start Tue Mar 31 2020 09:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33633 * 122.74807 * 2 1 4 4 S 1.76199 * 107.92277 * 180.02562 * 3 2 1 5 5 C 1.70978 * 90.28436 * 359.97438 * 4 3 2 6 6 C 1.50695 * 124.92096 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47419 * 270.03075 * 6 5 4 8 8 C 1.34776 * 120.00365 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00125 * 179.71924 * 8 7 6 11 11 C 1.47432 * 125.64754 * 359.96732 * 10 8 7 12 12 C 1.55138 * 104.71922 * 155.81631 * 11 10 8 13 13 C 1.55153 * 101.48593 * 37.29696 * 12 11 10 14 14 O 1.42903 * 110.72008 * 82.69665 * 13 12 11 15 15 C 1.50700 * 110.87145 * 205.89550 * 13 12 11 16 16 H 1.08005 * 119.99933 * 118.66926 * 15 13 12 17 17 C 1.37877 * 120.00183 * 298.67646 * 15 13 12 18 18 N 1.31510 * 120.00157 * 183.38902 * 17 15 13 19 19 Si 1.86796 * 119.99842 * 3.38246 * 17 15 13 20 20 H 1.48505 * 109.47183 * 84.83938 * 19 17 15 21 21 H 1.48496 * 109.47107 * 204.83712 * 19 17 15 22 22 H 1.48501 * 109.47322 * 324.83896 * 19 17 15 23 23 C 1.47023 * 125.65054 * 180.27788 * 10 8 7 24 24 N 1.29025 * 110.16413 * 0.24703 * 5 4 3 25 25 H 1.09002 * 109.46935 * 89.99871 * 1 2 3 26 26 H 1.09001 * 109.47231 * 210.00041 * 1 2 3 27 27 H 1.09000 * 109.46651 * 330.00232 * 1 2 3 28 28 H 1.07993 * 126.04369 * 0.03553 * 3 2 1 29 29 H 1.09002 * 109.47524 * 150.02532 * 6 5 4 30 30 H 1.09006 * 109.47199 * 30.02555 * 6 5 4 31 31 H 0.97005 * 120.00152 * 359.97438 * 7 6 5 32 32 H 1.08992 * 110.36956 * 274.74284 * 11 10 8 33 33 H 1.09001 * 110.36358 * 37.07584 * 11 10 8 34 34 H 1.09004 * 111.18918 * 279.19277 * 12 11 10 35 35 H 1.09002 * 110.90060 * 155.27952 * 12 11 10 36 36 H 0.96692 * 113.99762 * 185.02513 * 14 13 12 37 37 H 0.97003 * 120.00526 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.88046 * 300.43992 * 23 10 8 39 39 H 1.08996 * 109.88520 * 61.44730 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5040 -0.9819 -0.0002 6 6 4.4835 -2.1272 -0.0010 7 7 4.8002 -2.4980 -1.3825 8 6 5.6617 -3.5046 -1.6295 9 8 6.1757 -4.1053 -0.7057 10 7 5.9487 -3.8494 -2.9003 11 6 5.3941 -3.2134 -4.1093 12 6 6.4402 -3.4974 -5.2192 13 6 6.8962 -4.9346 -4.8536 14 8 5.9831 -5.9026 -5.3745 15 6 8.2928 -5.1985 -5.3543 16 1 9.0825 -5.4304 -4.6548 17 6 8.5627 -5.1438 -6.7053 18 7 9.7653 -5.4391 -7.1481 19 14 7.2202 -4.6503 -7.9066 20 1 7.1594 -3.1694 -8.0001 21 1 7.5203 -5.2187 -9.2452 22 1 5.9135 -5.1702 -7.4297 23 6 6.8617 -4.9262 -3.3107 24 7 2.2200 -1.1084 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.8393 2.1307 0.0005 29 1 4.0436 -2.9819 0.5129 30 1 5.3963 -1.8250 0.5123 31 1 4.3898 -2.0190 -2.1195 32 1 4.4339 -3.6602 -4.3666 33 1 5.2853 -2.1396 -3.9570 34 1 7.2736 -2.7970 -5.1636 35 1 5.9769 -3.4734 -6.2056 36 1 6.1798 -6.8114 -5.1093 37 1 9.9551 -5.4010 -8.0986 38 1 7.8606 -4.7348 -2.9187 39 1 6.4956 -5.8838 -2.9406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591903999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:47 Heat of formation + Delta-G solvation = -42.117205 kcal Electronic energy + Delta-G solvation = -23271.409825 eV Core-core repulsion = 19726.501809 eV Total energy + Delta-G solvation = -3544.908016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49175 -40.86729 -39.38443 -36.21966 -36.17316 -34.49929 -33.10791 -31.84134 -30.09454 -29.13345 -28.41983 -26.78673 -24.27449 -23.59365 -21.69084 -21.18252 -20.77695 -19.77495 -19.15323 -18.49603 -17.54760 -17.01026 -16.83702 -16.61668 -16.22680 -15.89874 -15.51903 -15.20334 -14.98289 -14.78080 -14.66312 -14.20829 -14.06810 -14.02956 -13.52609 -13.37631 -13.30124 -13.19759 -13.09395 -12.84455 -12.37954 -12.24578 -12.16036 -11.84997 -11.40647 -10.95418 -10.78854 -10.74775 -10.48821 -10.39181 -10.34398 -9.77226 -9.54113 -8.34852 -6.50808 -0.45527 0.30663 0.72211 1.38638 1.40232 1.48337 1.69940 1.84379 2.03094 2.41262 2.84866 2.99105 3.01008 3.54284 3.71938 3.80420 4.02447 4.21680 4.23756 4.28399 4.33687 4.42943 4.49143 4.52156 4.78377 4.80018 4.82312 4.92899 4.95589 5.05239 5.06490 5.23005 5.33656 5.43212 5.51831 5.94889 6.08344 6.60344 6.69164 6.86716 7.12952 7.30479 7.41420 8.79403 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.003040 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.902087 B = 9208.451255 C = 9555.572883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.040 3.960 3 C -0.246 4.246 4 S 0.179 5.821 5 C 0.006 3.994 6 C 0.222 3.778 7 N -0.727 5.727 8 C 0.722 3.278 9 O -0.631 6.631 10 N -0.629 5.629 11 C 0.110 3.890 12 C -0.127 4.127 13 C 0.217 3.783 14 O -0.572 6.572 15 C -0.551 4.551 16 H 0.036 0.964 17 C 0.036 3.964 18 N -0.937 5.937 19 Si 0.939 3.061 20 H -0.265 1.265 21 H -0.310 1.310 22 H -0.213 1.213 23 C 0.123 3.877 24 N -0.479 5.479 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.210 0.790 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.407 0.593 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.377 0.623 37 H 0.268 0.732 38 H 0.048 0.952 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 16.863 12.035 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.385 4.385 4 S 0.433 5.567 5 C -0.271 4.271 6 C 0.095 3.905 7 N -0.385 5.385 8 C 0.424 3.576 9 O -0.513 6.513 10 N -0.365 5.365 11 C -0.012 4.012 12 C -0.165 4.165 13 C 0.177 3.823 14 O -0.380 6.380 15 C -0.589 4.589 16 H 0.054 0.946 17 C -0.165 4.165 18 N -0.576 5.576 19 Si 0.764 3.236 20 H -0.191 1.191 21 H -0.238 1.238 22 H -0.136 1.136 23 C -0.001 4.001 24 N -0.196 5.196 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.227 0.773 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.243 0.757 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.225 0.775 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.333 16.977 12.419 27.903 hybrid contribution -0.407 -0.600 -0.729 1.028 sum -18.741 16.378 11.690 27.497 Atomic orbital electron populations 1.20454 0.85283 1.04184 1.03733 1.20791 0.99660 0.86263 1.02489 1.27386 0.94889 1.05195 1.11054 1.84069 1.07065 1.00093 1.65444 1.26666 0.93826 0.99330 1.07287 1.19468 0.95106 0.93061 0.82856 1.44852 1.48161 1.36709 1.08784 1.15420 0.79912 0.80601 0.81688 1.90881 1.58719 1.57888 1.43780 1.47586 1.47779 1.37215 1.03964 1.22443 0.96967 0.98559 0.83253 1.23058 0.98676 0.96201 0.98552 1.19808 0.87293 0.87694 0.87523 1.86439 1.55535 1.19707 1.76305 1.21409 0.94151 1.50317 0.92999 0.94569 1.25794 0.97391 0.92944 1.00325 1.70065 1.23276 1.48709 1.15521 0.86086 0.82566 0.78870 0.76044 1.19083 1.23790 1.13552 1.22354 0.91965 0.89272 0.96486 1.66139 1.05016 1.33528 1.14879 0.89936 0.91350 0.88307 0.77342 0.89835 0.88708 0.75666 0.90161 0.88361 0.89924 0.90172 0.77470 0.92293 0.93338 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.31 71.24 0.73 -0.09 16 2 C 0.04 0.65 6.74 41.52 0.28 0.93 16 3 C -0.25 -2.98 11.13 66.77 0.74 -2.24 16 4 S 0.18 2.56 23.18 -56.49 -1.31 1.25 16 5 C 0.01 0.11 6.76 88.52 0.60 0.71 16 6 C 0.22 5.12 6.25 85.63 0.54 5.66 16 7 N -0.73 -18.89 5.51 -482.31 -2.66 -21.55 16 8 C 0.72 25.31 8.49 179.06 1.52 26.83 16 9 O -0.63 -26.95 16.67 -3.99 -0.07 -27.01 16 10 N -0.63 -22.27 3.32 -829.29 -2.76 -25.03 16 11 C 0.11 3.25 6.58 86.93 0.57 3.82 16 12 C -0.13 -4.73 4.83 32.07 0.15 -4.58 16 13 C 0.22 9.41 0.67 -10.35 -0.01 9.40 16 14 O -0.57 -23.42 10.44 -148.98 -1.56 -24.98 16 15 C -0.55 -29.74 8.82 25.60 0.23 -29.51 16 16 H 0.04 2.21 7.82 -2.91 -0.02 2.18 16 17 C 0.04 1.98 5.47 84.66 0.46 2.44 16 18 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 19 Si 0.94 42.38 23.89 68.60 1.64 44.02 16 20 H -0.27 -11.14 7.08 99.48 0.70 -10.43 16 21 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.21 -9.05 5.50 99.48 0.55 -8.50 16 23 C 0.12 5.10 6.21 86.73 0.54 5.63 16 24 N -0.48 -10.38 10.53 -179.40 -1.89 -12.27 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.54 8.12 -2.39 -0.02 0.53 16 28 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.41 8.87 6.94 -92.70 -0.64 8.23 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.19 7.29 -2.39 -0.02 2.17 16 34 H 0.08 3.18 8.05 -2.38 -0.02 3.16 16 35 H 0.08 2.92 5.00 -2.39 -0.01 2.91 16 36 H 0.38 13.67 9.08 -74.06 -0.67 13.00 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.05 2.22 7.66 -2.39 -0.02 2.21 16 39 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 Total: -1.00 -72.98 334.54 -2.32 -75.30 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.38 Total: 27.57 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.36 Total: 19.02 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -7.00 Total: -115.17 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.62 Total: -52.00 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.64 Total: 44.02 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -72.98 -2.32 -75.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591903999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.184 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds