Wall clock time and date at job start Tue Mar 31 2020 09:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33641 * 126.03528 * 2 1 4 4 N 1.31791 * 114.50066 * 179.79139 * 3 2 1 5 5 C 1.29022 * 117.12054 * 0.46688 * 4 3 2 6 6 C 1.50706 * 124.91641 * 179.81644 * 5 4 3 7 7 N 1.46496 * 109.46951 * 89.69499 * 6 5 4 8 8 C 1.34775 * 119.99590 * 180.02562 * 7 6 5 9 9 O 1.21584 * 120.00420 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.47426 * 125.64759 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83225 * 204.09361 * 11 10 8 13 13 C 1.55161 * 101.58383 * 322.99376 * 12 11 10 14 14 O 1.42907 * 110.71891 * 277.13866 * 13 12 11 15 15 C 1.50703 * 110.72234 * 154.04383 * 13 12 11 16 16 H 1.07999 * 119.99884 * 359.97438 * 15 13 12 17 17 C 1.37868 * 119.99964 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00418 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00269 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46918 * 89.99893 * 19 17 15 21 21 H 1.48498 * 109.47633 * 210.00003 * 19 17 15 22 22 H 1.48502 * 109.46878 * 330.00374 * 19 17 15 23 23 C 1.47025 * 125.64778 * 179.71817 * 10 8 7 24 24 S 1.70982 * 110.17096 * 359.55174 * 5 4 3 25 25 H 1.08999 * 109.46694 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47067 * 299.98298 * 1 2 3 27 27 H 1.08999 * 109.46867 * 59.98847 * 1 2 3 28 28 H 1.08001 * 122.75427 * 0.03400 * 3 2 1 29 29 H 1.09001 * 109.47076 * 209.69900 * 6 5 4 30 30 H 1.09007 * 109.46376 * 329.69645 * 6 5 4 31 31 H 0.97001 * 120.00463 * 0.02562 * 7 6 5 32 32 H 1.08992 * 110.36668 * 322.93629 * 11 10 8 33 33 H 1.09002 * 110.36579 * 85.25969 * 11 10 8 34 34 H 1.09004 * 111.00673 * 81.06872 * 12 11 10 35 35 H 1.09004 * 111.00782 * 204.88341 * 12 11 10 36 36 H 0.96698 * 114.00125 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00773 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.88057 * 298.38932 * 23 10 8 39 39 H 1.08991 * 109.88803 * 59.55733 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5845 0.8172 0.0044 5 6 3.9312 -0.4256 -0.0013 6 6 5.3533 -0.9244 -0.0017 7 7 5.8144 -1.0860 1.3794 8 6 7.0650 -1.5241 1.6253 9 8 7.8103 -1.7856 0.7010 10 7 7.4891 -1.6732 2.8959 11 6 6.6934 -1.3957 4.1055 12 6 7.7397 -1.1147 5.2127 13 6 8.8585 -2.1259 4.8479 14 8 8.5602 -3.4212 5.3728 15 6 10.1961 -1.6449 5.3486 16 1 10.2683 -0.7077 5.8804 17 6 11.3274 -2.4013 5.1279 18 7 11.2396 -3.5424 4.4799 19 14 12.9855 -1.8048 5.7480 20 1 13.2130 -2.3169 7.1232 21 1 14.0583 -2.3033 4.8504 22 1 13.0031 -0.3200 5.7635 23 6 8.8199 -2.1457 3.3051 24 16 2.5437 -1.4248 -0.0009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.9024 2.0875 0.0005 29 1 5.4014 -1.8845 -0.5155 30 1 5.9905 -0.2047 -0.5157 31 1 5.2197 -0.8777 2.1169 32 1 6.0605 -0.5219 3.9510 33 1 6.0870 -2.2627 4.3678 34 1 8.1053 -0.0895 5.1538 35 1 7.3294 -1.3248 6.2005 36 1 9.2291 -4.0903 5.1729 37 1 12.0354 -4.0747 4.3249 38 1 8.9811 -3.1605 2.9412 39 1 9.5874 -1.4812 2.9085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591969019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:17 Heat of formation + Delta-G solvation = -29.902005 kcal Electronic energy + Delta-G solvation = -23174.335384 eV Core-core repulsion = 19629.957059 eV Total energy + Delta-G solvation = -3544.378325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13929 -39.54505 -37.45532 -34.86839 -34.28175 -32.78808 -32.14962 -30.25733 -28.89641 -27.71785 -25.90240 -24.80521 -23.61094 -22.52060 -19.90305 -19.71620 -19.39005 -18.43720 -17.52508 -17.08421 -16.09281 -15.46472 -15.37795 -15.07271 -14.77854 -14.51481 -14.11770 -14.01699 -13.48496 -13.40989 -13.17358 -12.97609 -12.84488 -12.77750 -12.48171 -12.08581 -11.62711 -11.50141 -11.43255 -11.04987 -10.81500 -10.64625 -10.47976 -10.15747 -9.90988 -9.74089 -9.54128 -9.33946 -9.11368 -8.95916 -8.65635 -8.31070 -7.78777 -6.28175 -4.36612 0.30189 0.99351 1.42542 2.43330 3.16537 3.23457 3.30047 3.32879 3.68008 3.84505 4.27267 4.43832 4.53292 4.71487 4.76070 4.99401 5.06328 5.29824 5.33969 5.38452 5.49945 5.57120 5.70757 5.80830 5.86641 6.02450 6.09363 6.50809 6.57003 6.72313 6.88253 6.96985 7.23977 7.32615 7.43709 7.58201 7.74985 8.02428 8.47201 8.66705 9.05835 9.32235 9.44849 10.79687 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.032427 B = 0.002754 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.278263 B =10165.010503 C =10344.002881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.223 4.223 3 C 0.029 3.971 4 N -0.453 5.453 5 C 0.024 3.976 6 C 0.221 3.779 7 N -0.747 5.747 8 C 0.719 3.281 9 O -0.594 6.594 10 N -0.627 5.627 11 C 0.103 3.897 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.587 6.587 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.120 3.880 24 S 0.146 5.854 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.176 0.824 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.395 0.605 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.271 0.729 38 H 0.063 0.937 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.474 5.137 -7.166 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.344 4.344 3 C -0.122 4.122 4 N -0.167 5.167 5 C -0.253 4.253 6 C 0.093 3.907 7 N -0.406 5.406 8 C 0.421 3.579 9 O -0.473 6.473 10 N -0.364 5.364 11 C -0.021 4.021 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.397 6.397 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.002 4.002 24 S 0.400 5.600 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.193 0.807 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.038 4.408 -7.785 21.944 hybrid contribution 0.759 1.027 0.351 1.324 sum -19.279 5.435 -7.433 21.365 Atomic orbital electron populations 1.20246 0.86627 1.03309 1.03304 1.26156 1.01860 0.95399 1.11032 1.21721 0.86811 1.00251 1.03465 1.66296 1.17799 1.18655 1.13932 1.26980 1.00871 0.91572 1.05909 1.19459 0.85365 1.01454 0.84457 1.45036 1.14479 1.73907 1.07211 1.15398 0.81158 0.78608 0.82732 1.90898 1.55155 1.58480 1.42748 1.47923 1.17216 1.68576 1.02660 1.22252 0.94764 0.98966 0.86093 1.22733 0.95744 0.99864 0.97067 1.19491 0.91716 0.81470 0.86499 1.86068 1.52255 1.21388 1.79979 1.21513 0.91420 1.07232 1.37303 0.91487 1.25076 0.99745 0.94719 0.93749 1.69572 1.30606 1.12952 1.40352 0.86385 0.82562 0.79187 0.78674 1.20393 1.20974 1.19707 1.22935 0.79719 0.99070 0.98484 1.84150 0.98147 1.10685 1.66990 0.91108 0.90125 0.90189 0.80705 0.89487 0.88669 0.77088 0.92681 0.91925 0.90537 0.90541 0.76173 0.91885 0.91902 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.42 36.01 0.38 0.00 16 2 C -0.22 -1.84 6.60 -35.92 -0.24 -2.08 16 3 C 0.03 0.28 11.25 -19.18 -0.22 0.06 16 4 N -0.45 -5.59 10.54 -11.86 -0.13 -5.72 16 5 C 0.02 0.28 6.76 -13.46 -0.09 0.19 16 6 C 0.22 2.96 6.25 -5.19 -0.03 2.92 16 7 N -0.75 -11.54 5.51 -66.41 -0.37 -11.91 16 8 C 0.72 14.59 8.49 -86.92 -0.74 13.85 16 9 O -0.59 -14.20 16.67 5.29 0.09 -14.11 16 10 N -0.63 -13.06 3.33 -176.23 -0.59 -13.64 16 11 C 0.10 1.81 6.56 -2.53 -0.02 1.79 16 12 C -0.12 -2.31 6.23 -24.58 -0.15 -2.46 16 13 C 0.25 6.02 0.86 -89.93 -0.08 5.94 16 14 O -0.59 -14.78 13.07 -35.23 -0.46 -15.24 16 15 C -0.54 -14.00 8.12 -34.44 -0.28 -14.28 16 16 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 17 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -23.85 10.97 55.43 0.61 -23.24 16 19 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.12 2.93 5.54 -3.06 -0.02 2.91 16 24 S 0.15 1.36 23.18 -107.50 -2.49 -1.14 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.39 5.40 6.94 -40.82 -0.28 5.12 16 32 H 0.05 0.80 7.30 -51.93 -0.38 0.42 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.39 10.06 6.98 45.56 0.32 10.37 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 1.67 8.07 -51.93 -0.42 1.25 16 39 H 0.06 1.71 7.82 -51.93 -0.41 1.31 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -30.90 342.74 -9.28 -40.18 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.51 Total: 13.59 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.58 Total: 10.59 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.47 Total: -54.51 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.37 Total: -29.35 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.90 -9.28 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591969019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.276 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds