Wall clock time and date at job start Tue Mar 31 2020 09:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33641 * 126.03528 * 2 1 4 4 N 1.31791 * 114.50066 * 179.79139 * 3 2 1 5 5 C 1.29022 * 117.12054 * 0.46688 * 4 3 2 6 6 C 1.50706 * 124.91641 * 179.81644 * 5 4 3 7 7 N 1.46496 * 109.46951 * 89.69499 * 6 5 4 8 8 C 1.34775 * 119.99590 * 180.02562 * 7 6 5 9 9 O 1.21584 * 120.00420 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.47426 * 125.64759 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83225 * 204.09361 * 11 10 8 13 13 C 1.55161 * 101.58383 * 322.99376 * 12 11 10 14 14 O 1.42907 * 110.71891 * 277.13866 * 13 12 11 15 15 C 1.50703 * 110.72234 * 154.04383 * 13 12 11 16 16 H 1.07999 * 119.99884 * 359.97438 * 15 13 12 17 17 C 1.37868 * 119.99964 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00418 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00269 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46918 * 89.99893 * 19 17 15 21 21 H 1.48498 * 109.47633 * 210.00003 * 19 17 15 22 22 H 1.48502 * 109.46878 * 330.00374 * 19 17 15 23 23 C 1.47025 * 125.64778 * 179.71817 * 10 8 7 24 24 S 1.70982 * 110.17096 * 359.55174 * 5 4 3 25 25 H 1.08999 * 109.46694 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47067 * 299.98298 * 1 2 3 27 27 H 1.08999 * 109.46867 * 59.98847 * 1 2 3 28 28 H 1.08001 * 122.75427 * 0.03400 * 3 2 1 29 29 H 1.09001 * 109.47076 * 209.69900 * 6 5 4 30 30 H 1.09007 * 109.46376 * 329.69645 * 6 5 4 31 31 H 0.97001 * 120.00463 * 0.02562 * 7 6 5 32 32 H 1.08992 * 110.36668 * 322.93629 * 11 10 8 33 33 H 1.09002 * 110.36579 * 85.25969 * 11 10 8 34 34 H 1.09004 * 111.00673 * 81.06872 * 12 11 10 35 35 H 1.09004 * 111.00782 * 204.88341 * 12 11 10 36 36 H 0.96698 * 114.00125 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00773 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.88057 * 298.38932 * 23 10 8 39 39 H 1.08991 * 109.88803 * 59.55733 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5845 0.8172 0.0044 5 6 3.9312 -0.4256 -0.0013 6 6 5.3533 -0.9244 -0.0017 7 7 5.8144 -1.0860 1.3794 8 6 7.0650 -1.5241 1.6253 9 8 7.8103 -1.7856 0.7010 10 7 7.4891 -1.6732 2.8959 11 6 6.6934 -1.3957 4.1055 12 6 7.7397 -1.1147 5.2127 13 6 8.8585 -2.1259 4.8479 14 8 8.5602 -3.4212 5.3728 15 6 10.1961 -1.6449 5.3486 16 1 10.2683 -0.7077 5.8804 17 6 11.3274 -2.4013 5.1279 18 7 11.2396 -3.5424 4.4799 19 14 12.9855 -1.8048 5.7480 20 1 13.2130 -2.3169 7.1232 21 1 14.0583 -2.3033 4.8504 22 1 13.0031 -0.3200 5.7635 23 6 8.8199 -2.1457 3.3051 24 16 2.5437 -1.4248 -0.0009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.9024 2.0875 0.0005 29 1 5.4014 -1.8845 -0.5155 30 1 5.9905 -0.2047 -0.5157 31 1 5.2197 -0.8777 2.1169 32 1 6.0605 -0.5219 3.9510 33 1 6.0870 -2.2627 4.3678 34 1 8.1053 -0.0895 5.1538 35 1 7.3294 -1.3248 6.2005 36 1 9.2291 -4.0903 5.1729 37 1 12.0354 -4.0747 4.3249 38 1 8.9811 -3.1605 2.9412 39 1 9.5874 -1.4812 2.9085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591969019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:17 Heat of formation + Delta-G solvation = -53.190265 kcal Electronic energy + Delta-G solvation = -23175.345239 eV Core-core repulsion = 19629.957059 eV Total energy + Delta-G solvation = -3545.388180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39515 -40.70410 -39.18167 -36.16649 -36.11001 -34.16107 -33.56423 -31.84555 -30.09797 -29.38623 -27.13341 -26.19738 -24.60515 -24.01142 -21.46390 -21.21197 -20.51563 -19.44560 -19.10621 -18.73071 -17.55723 -17.03600 -16.83773 -16.32652 -16.11737 -15.80762 -15.39154 -15.23532 -14.78253 -14.67935 -14.57019 -14.29765 -13.88304 -13.65346 -13.59415 -13.49149 -13.42641 -13.22477 -12.85225 -12.55555 -12.30953 -12.28530 -12.10557 -12.09813 -11.43943 -11.20393 -10.71439 -10.63269 -10.38968 -10.30389 -10.25300 -9.84730 -9.46345 -8.26660 -6.42335 -0.46728 0.26111 0.68816 1.40732 1.44045 1.47482 1.53684 1.91525 2.06430 2.38240 2.94084 2.99760 3.06252 3.79519 3.87280 3.99967 4.08069 4.15980 4.24426 4.34197 4.37161 4.49285 4.57231 4.70659 4.76271 4.87706 5.02888 5.03282 5.12126 5.20179 5.24660 5.26530 5.36393 5.47733 5.75987 5.97076 6.09271 6.64035 6.67969 6.95513 7.29666 7.39395 7.45870 8.79674 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.032427 B = 0.002754 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.278263 B =10165.010503 C =10344.002881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.204 4.204 3 C 0.008 3.992 4 N -0.476 5.476 5 C -0.004 4.004 6 C 0.222 3.778 7 N -0.726 5.726 8 C 0.716 3.284 9 O -0.637 6.637 10 N -0.632 5.632 11 C 0.107 3.893 12 C -0.111 4.111 13 C 0.234 3.766 14 O -0.589 6.589 15 C -0.556 4.556 16 H 0.068 0.932 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.269 1.269 23 C 0.137 3.863 24 S 0.173 5.827 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.197 0.803 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.407 0.593 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.379 0.621 37 H 0.271 0.729 38 H 0.029 0.971 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 6.252 -6.611 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.326 4.326 3 C -0.143 4.143 4 N -0.191 5.191 5 C -0.280 4.280 6 C 0.095 3.905 7 N -0.384 5.384 8 C 0.418 3.582 9 O -0.519 6.519 10 N -0.369 5.369 11 C -0.014 4.014 12 C -0.148 4.148 13 C 0.194 3.806 14 O -0.398 6.398 15 C -0.595 4.595 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.193 1.193 23 C 0.013 3.987 24 S 0.426 5.574 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.243 0.757 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.806 5.550 -7.212 24.555 hybrid contribution 1.462 0.689 0.126 1.621 sum -21.344 6.239 -7.086 23.339 Atomic orbital electron populations 1.20439 0.84028 1.04406 1.04801 1.26646 1.03378 0.94379 1.08169 1.22064 0.86045 1.01700 1.04487 1.66255 1.19587 1.19242 1.14027 1.26521 1.00581 0.92252 1.08647 1.19430 0.86717 1.01430 0.82907 1.44843 1.12675 1.72154 1.08733 1.15563 0.82183 0.78492 0.81966 1.90862 1.56777 1.60272 1.44016 1.47853 1.16395 1.68683 1.03962 1.22400 0.94136 1.01146 0.83766 1.22724 0.94752 0.98703 0.98658 1.19695 0.93011 0.81835 0.86067 1.86057 1.51935 1.21740 1.80050 1.21843 0.92700 1.07421 1.37496 0.91398 1.25823 1.02932 0.94902 0.93921 1.69675 1.31276 1.13728 1.40986 0.85455 0.78612 0.78756 0.78219 1.19658 1.21106 1.19309 1.22444 0.81031 0.96352 0.98829 1.84042 0.96858 1.10396 1.66076 0.90235 0.88571 0.88515 0.78664 0.89098 0.90130 0.75686 0.88664 0.90820 0.89954 0.89000 0.77058 0.91918 0.95223 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.42 71.24 0.74 0.27 16 2 C -0.20 -2.77 6.60 24.64 0.16 -2.60 16 3 C 0.01 0.13 11.25 83.66 0.94 1.07 16 4 N -0.48 -11.14 10.54 -191.43 -2.02 -13.15 16 5 C 0.00 -0.09 6.76 88.52 0.60 0.51 16 6 C 0.22 5.94 6.25 85.64 0.54 6.48 16 7 N -0.73 -21.89 5.51 -482.29 -2.66 -24.54 16 8 C 0.72 29.31 8.49 179.05 1.52 30.83 16 9 O -0.64 -31.51 16.67 -3.98 -0.07 -31.57 16 10 N -0.63 -26.37 3.33 -829.74 -2.76 -29.13 16 11 C 0.11 3.56 6.56 86.85 0.57 4.13 16 12 C -0.11 -4.22 6.23 31.99 0.20 -4.02 16 13 C 0.23 11.44 0.86 -10.35 -0.01 11.43 16 14 O -0.59 -30.00 13.07 -148.98 -1.95 -31.94 16 15 C -0.56 -29.33 8.12 25.60 0.21 -29.12 16 16 H 0.07 3.48 7.76 -2.91 -0.02 3.45 16 17 C 0.02 1.31 5.28 84.65 0.45 1.76 16 18 N -0.92 -50.17 10.97 21.44 0.24 -49.93 16 19 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C 0.14 6.95 5.54 86.73 0.48 7.43 16 24 S 0.17 2.84 23.18 -56.49 -1.31 1.53 16 25 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.41 10.32 6.94 -92.71 -0.64 9.68 16 32 H 0.10 2.42 7.30 -2.39 -0.02 2.41 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 3.03 8.03 -2.38 -0.02 3.01 16 35 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.38 20.32 6.98 -74.06 -0.52 19.80 16 37 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.03 1.66 8.07 -2.38 -0.02 1.64 16 39 H 0.03 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -68.83 342.74 -2.17 -71.00 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.07 Total: 35.25 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 6.40 Total: 28.14 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -7.20 Total: -116.76 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -2.01 Total: -63.52 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.31 Total: 1.53 kcal Total: -68.83 -2.17 -71.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591969019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.810 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds