Wall clock time and date at job start Tue Mar 31 2020 11:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 C 1.52993 * 109.47206 * 120.00312 * 2 1 3 5 5 O 1.42900 * 109.47279 * 64.99859 * 4 2 1 6 6 C 1.35537 * 117.00219 * 180.02562 * 5 4 2 7 7 C 1.39028 * 120.47227 * 180.02562 * 6 5 4 8 8 C 1.39111 * 118.28624 * 180.02562 * 7 6 5 9 9 N 1.39100 * 120.48567 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99818 * 185.06316 * 9 8 7 11 11 O 1.21261 * 120.00371 * 354.92215 * 10 9 8 12 12 C 1.50707 * 119.99712 * 174.64495 * 10 9 8 13 13 S 1.81000 * 109.46955 * 180.27620 * 12 10 9 14 14 C 1.76199 * 100.00101 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99938 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00463 * 179.97438 * 14 13 12 17 17 N 1.31635 * 119.99894 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00503 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47607 * 59.99511 * 18 16 14 20 20 H 1.48504 * 109.47353 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46984 * 299.99849 * 18 16 14 22 22 N 1.33083 * 119.02866 * 0.25415 * 8 7 6 23 23 C 1.31724 * 120.84705 * 359.48111 * 22 8 7 24 24 N 1.31777 * 121.89142 * 0.53590 * 23 22 8 25 25 H 1.08995 * 109.47050 * 299.99678 * 1 2 3 26 26 H 1.09000 * 109.46901 * 59.99609 * 1 2 3 27 27 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46688 * 240.00049 * 2 1 3 29 29 H 1.08998 * 109.47123 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46976 * 300.00548 * 3 2 1 31 31 H 1.09003 * 109.46710 * 59.99892 * 3 2 1 32 32 H 1.09005 * 109.47060 * 305.00282 * 4 2 1 33 33 H 1.08995 * 109.47723 * 184.99742 * 4 2 1 34 34 H 1.07997 * 120.85467 * 0.03660 * 7 6 5 35 35 H 0.96996 * 120.00373 * 5.06086 * 9 8 7 36 36 H 1.09000 * 109.47245 * 300.27507 * 12 10 9 37 37 H 1.09000 * 109.47096 * 60.27981 * 12 10 9 38 38 H 0.97001 * 120.00278 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.05530 * 180.26702 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6620 -2.0982 1.1919 6 6 2.0387 -2.8834 2.2304 7 6 1.7096 -4.2341 2.2486 8 6 2.1188 -4.9976 3.3371 9 7 1.8139 -6.3532 3.4027 10 6 2.1250 -7.0612 4.5065 11 8 2.7520 -6.5404 5.4043 12 6 1.6881 -8.4985 4.6277 13 16 2.2465 -9.1670 6.2143 14 6 1.6189 -10.8089 6.0925 15 1 1.0743 -11.1149 5.2114 16 6 1.8241 -11.7091 7.1288 17 7 2.4882 -11.3364 8.2025 18 14 1.1593 -13.4499 6.9993 19 1 1.7567 -14.1214 5.8173 20 1 1.5105 -14.2066 8.2279 21 1 -0.3175 -13.4059 6.8496 22 7 2.8012 -4.4109 4.3175 23 6 3.0978 -3.1288 4.2606 24 7 2.7278 -2.3729 3.2465 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6445 1.2951 34 1 1.1510 -4.6790 1.4385 35 1 1.3775 -6.7890 2.6540 36 1 0.6009 -8.5537 4.5726 37 1 2.1231 -9.0802 3.8150 38 1 2.6320 -11.9656 8.9266 39 1 3.6566 -2.6832 5.0703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602419358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:59 Heat of formation + Delta-G solvation = -48.002620 kcal Electronic energy + Delta-G solvation = -21993.540348 eV Core-core repulsion = 18448.377121 eV Total energy + Delta-G solvation = -3545.163226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.45162 -40.85321 -39.60792 -36.58440 -36.22062 -34.57443 -33.47813 -32.45975 -30.60673 -28.04774 -27.77222 -27.58682 -25.55463 -24.66891 -22.15852 -21.29128 -20.29700 -19.79527 -18.78656 -17.95796 -17.49847 -17.08889 -16.86727 -16.74086 -16.47528 -16.08020 -15.97752 -15.63045 -15.24958 -14.92300 -14.88201 -14.49333 -14.16591 -13.79239 -13.58868 -13.16555 -13.04095 -12.86563 -12.71938 -12.64149 -12.32595 -12.05526 -11.90030 -11.76711 -11.70736 -11.59298 -11.34503 -11.11798 -10.47588 -10.29342 -10.17031 -9.88136 -8.66680 -8.33741 -6.12083 -0.16961 0.11822 1.11943 1.40316 1.45211 1.53153 1.56286 1.69469 2.06705 2.27449 2.79589 3.00788 3.02842 3.08036 3.37097 3.74502 3.84185 3.87061 3.89695 4.12585 4.16258 4.27616 4.39133 4.48305 4.49655 4.55567 4.67246 4.78337 4.84254 4.98502 5.00376 5.19329 5.31207 5.38737 5.41262 5.43261 5.63260 6.04441 6.20665 6.27845 6.93618 7.07759 7.21646 8.75065 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.048327 B = 0.002084 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.242100 B =13431.793230 C =13890.931679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.071 3.929 5 O -0.299 6.299 6 C 0.374 3.626 7 C -0.275 4.275 8 C 0.420 3.580 9 N -0.637 5.637 10 C 0.526 3.474 11 O -0.488 6.488 12 C -0.128 4.128 13 S -0.147 6.147 14 C -0.547 4.547 15 H 0.087 0.913 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.998 3.002 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.262 1.262 22 N -0.572 5.572 23 C 0.358 3.642 24 N -0.600 5.600 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.183 0.817 35 H 0.441 0.559 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 21.405 -20.334 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.004 4.004 5 O -0.203 6.203 6 C 0.189 3.811 7 C -0.302 4.302 8 C 0.182 3.818 9 N -0.287 5.287 10 C 0.312 3.688 11 O -0.356 6.356 12 C -0.279 4.279 13 S 0.080 5.920 14 C -0.694 4.694 15 H 0.105 0.895 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.186 1.186 22 N -0.297 5.297 23 C 0.070 3.930 24 N -0.334 5.334 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.200 0.800 35 H 0.283 0.717 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.917 22.472 -18.212 29.072 hybrid contribution -1.336 -2.018 -1.394 2.792 sum -4.253 20.455 -19.606 28.651 Atomic orbital electron populations 1.21836 0.94211 1.01976 1.02455 1.21206 0.97038 0.96645 0.96270 1.21762 1.01520 0.93556 1.03155 1.23015 1.00468 0.76859 1.00048 1.86196 1.72597 1.23252 1.38265 1.19829 0.87071 0.88522 0.85724 1.21200 1.13242 0.92442 1.03273 1.18583 0.88493 0.85598 0.89117 1.43435 1.59453 1.05734 1.20055 1.20504 0.78862 0.87939 0.81535 1.90819 1.35460 1.70521 1.38813 1.23384 1.06256 0.93826 1.04399 1.85664 1.74462 1.12456 1.19389 1.23183 1.41614 0.96990 1.07640 0.89532 1.26121 0.94979 1.04140 0.93911 1.70177 1.39564 1.37582 1.07447 0.85008 0.78969 0.76035 0.78014 1.18618 1.20616 1.18636 1.68512 1.18294 1.13923 1.28998 1.25108 0.90354 0.84069 0.93471 1.68209 1.19533 1.41069 1.04574 0.92702 0.91165 0.93025 0.89980 0.91981 0.90583 0.92104 0.91588 0.91406 0.79977 0.71717 0.86271 0.86163 0.92020 0.76038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.09 71.98 0.65 -0.95 16 2 C -0.09 -1.02 3.16 -10.79 -0.03 -1.06 16 3 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 4 C 0.07 1.09 4.72 71.98 0.34 1.43 16 5 O -0.30 -5.80 9.67 -88.42 -0.85 -6.65 16 6 C 0.37 8.48 7.52 84.71 0.64 9.11 16 7 C -0.27 -5.82 9.99 22.67 0.23 -5.60 16 8 C 0.42 11.49 7.45 132.82 0.99 12.47 16 9 N -0.64 -16.23 5.38 -308.15 -1.66 -17.89 16 10 C 0.53 18.92 7.80 87.66 0.68 19.61 16 11 O -0.49 -22.37 14.17 -2.97 -0.04 -22.42 16 12 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16 13 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 14 C -0.55 -30.36 9.50 67.95 0.65 -29.71 16 15 H 0.09 4.40 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.75 5.49 84.86 0.47 1.21 16 17 N -0.91 -55.42 13.22 21.65 0.29 -55.13 16 18 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 22 N -0.57 -18.51 8.05 -197.55 -1.59 -20.10 16 23 C 0.36 9.31 12.28 180.91 2.22 11.54 16 24 N -0.60 -14.47 9.38 -313.02 -2.94 -17.41 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.07 1.07 8.12 -2.38 -0.02 1.05 16 33 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.44 6.85 8.72 -92.71 -0.81 6.04 16 36 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 37 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.22 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -78.05 353.81 2.26 -75.79 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.26 Total: 14.71 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 7.93 Total: 13.32 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -5.90 Total: -110.53 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.90 Total: -29.07 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -78.05 2.26 -75.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602419358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.786 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds