Wall clock time and date at job start Tue Mar 31 2020 11:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34998 * 120.00017 * 2 1 4 4 C 1.46232 * 120.00057 * 5.64866 * 3 2 1 5 5 O 1.21723 * 120.00467 * 5.60990 * 4 3 2 6 6 N 1.34781 * 120.00163 * 185.60911 * 4 3 2 7 7 C 1.46502 * 120.00301 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47152 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00051 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99791 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00285 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48512 * 109.46972 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47179 * 119.99677 * 12 10 8 15 15 H 1.48496 * 109.47146 * 239.99916 * 12 10 8 16 16 C 1.46943 * 119.99464 * 180.02562 * 2 1 3 17 17 C 1.39936 * 120.21073 * 254.99573 * 16 2 1 18 18 C 1.37748 * 119.88046 * 180.02562 * 17 16 2 19 19 C 1.38568 * 120.32056 * 359.97438 * 18 17 16 20 20 C 1.38123 * 120.43830 * 0.02842 * 19 18 17 21 21 C 1.38606 * 120.10633 * 359.97438 * 20 19 18 22 22 O 1.35692 * 120.15985 * 180.02562 * 21 20 19 23 23 C 1.42906 * 116.99900 * 359.95715 * 22 21 20 24 24 F 1.39894 * 109.46887 * 300.00143 * 23 22 21 25 25 F 1.39900 * 109.46775 * 59.99961 * 23 22 21 26 26 H 1.08997 * 109.47426 * 174.81585 * 1 2 3 27 27 H 1.08996 * 109.47647 * 294.82378 * 1 2 3 28 28 H 1.09008 * 109.46782 * 54.82509 * 1 2 3 29 29 H 1.08001 * 119.99650 * 185.63902 * 3 2 1 30 30 H 0.96999 * 119.99796 * 0.02562 * 6 4 3 31 31 H 1.09002 * 109.47050 * 300.00709 * 7 6 4 32 32 H 1.09001 * 109.46853 * 59.99955 * 7 6 4 33 33 H 0.96996 * 120.00066 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.05468 * 0.02562 * 17 16 2 35 35 H 1.07997 * 119.83880 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.78023 * 179.74333 * 19 18 17 37 37 H 1.07995 * 119.94841 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46822 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1691 0.0000 4 6 1.4562 2.4325 0.1246 5 8 0.2565 2.4275 0.3307 6 7 2.1155 3.6025 0.0114 7 6 1.3883 4.8682 0.1357 8 6 2.3486 6.0177 -0.0298 9 1 3.3960 5.8248 -0.2091 10 6 1.8903 7.3157 0.0489 11 7 0.6150 7.5506 0.2678 12 14 3.0808 8.7406 -0.1555 13 1 4.4488 8.2127 -0.3910 14 1 2.6649 9.5708 -1.3144 15 1 3.0751 9.5709 1.0756 16 6 2.2416 -1.2726 -0.0006 17 6 2.8647 -1.7265 1.1673 18 6 3.5520 -2.9202 1.1590 19 6 3.6292 -3.6749 -0.0006 20 6 3.0191 -3.2395 -1.1608 21 6 2.3229 -2.0410 -1.1726 22 8 1.7227 -1.6125 -2.3116 23 6 1.8490 -2.4468 -3.4650 24 9 3.2023 -2.5963 -3.7864 25 9 1.2922 -3.7017 -3.1958 26 1 -0.3634 -1.0234 -0.0929 27 1 -0.3634 0.4314 0.9326 28 1 -0.3633 0.5921 -0.8401 29 1 3.2581 1.1713 -0.0919 30 1 3.0714 3.6066 -0.1532 31 1 0.6200 4.9231 -0.6356 32 1 0.9207 4.9235 1.1188 33 1 0.2925 8.4638 0.3228 34 1 2.8069 -1.1418 2.0735 35 1 4.0324 -3.2700 2.0608 36 1 4.1739 -4.6075 0.0016 37 1 3.0846 -3.8338 -2.0601 38 1 1.3251 -1.9887 -4.3038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787630349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:12 Heat of formation + Delta-G solvation = -146.221080 kcal Electronic energy + Delta-G solvation = -24895.155772 eV Core-core repulsion = 20759.600336 eV Total energy + Delta-G solvation = -4135.555436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.68913 -47.67176 -40.37125 -38.85943 -37.69148 -34.98279 -33.93814 -32.29824 -30.71802 -30.07204 -28.20187 -26.58753 -26.35503 -23.90388 -22.74230 -22.41800 -20.47143 -19.35942 -18.92762 -18.24253 -18.12493 -16.78904 -16.43907 -16.25592 -15.59448 -15.17512 -15.03434 -14.87894 -14.44097 -14.28128 -14.19718 -14.06245 -13.96970 -13.84865 -13.31391 -12.91624 -12.82868 -12.59961 -12.54896 -12.11979 -11.94173 -11.64671 -11.63757 -11.44556 -11.23162 -10.91643 -10.89365 -10.28029 -9.35437 -9.26154 -8.97292 -8.84144 -8.70650 -8.55241 -7.77556 -6.15018 -4.21441 0.89975 1.06174 1.63888 2.24729 3.12808 3.24614 3.31699 3.34975 3.38789 3.97399 3.97808 4.12905 4.30215 4.35402 4.56216 4.59270 4.79206 4.94633 5.07959 5.16923 5.21245 5.30213 5.57018 5.75321 5.82474 5.85927 6.00669 6.15163 6.19572 6.31467 6.33407 6.60934 6.68093 6.83858 7.35884 7.49696 7.55146 7.71261 7.99638 8.68837 8.81602 9.16127 9.45400 10.95299 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.002751 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.067284 B =10174.151071 C =10496.187179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.009 4.009 3 C -0.195 4.195 4 C 0.528 3.472 5 O -0.554 6.554 6 N -0.708 5.708 7 C 0.249 3.751 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.066 4.066 17 C -0.070 4.070 18 C -0.143 4.143 19 C -0.083 4.083 20 C -0.191 4.191 21 C 0.118 3.882 22 O -0.309 6.309 23 C 0.410 3.590 24 F -0.199 7.199 25 F -0.200 7.200 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.390 0.610 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 -24.601 -4.341 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.011 4.011 3 C -0.216 4.216 4 C 0.315 3.685 5 O -0.436 6.436 6 N -0.355 5.355 7 C 0.129 3.871 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.067 4.067 17 C -0.088 4.088 18 C -0.161 4.161 19 C -0.101 4.101 20 C -0.210 4.210 21 C 0.075 3.925 22 O -0.226 6.226 23 C 0.320 3.680 24 F -0.181 7.181 25 F -0.182 7.182 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.223 0.777 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.543 -24.254 -4.211 25.033 hybrid contribution 1.359 0.545 -0.354 1.506 sum 5.902 -23.709 -4.564 24.855 Atomic orbital electron populations 1.20875 0.89722 1.00427 1.04594 1.20765 0.96190 0.90175 0.93970 1.22946 0.99937 0.92454 1.06233 1.18194 0.87340 0.84337 0.78594 1.90758 1.14640 1.87892 1.50323 1.46392 1.11979 1.07056 1.70069 1.19100 0.92442 0.78030 0.97564 1.21281 0.94768 0.90770 1.51219 0.91864 1.24954 0.95369 0.98973 0.94764 1.69983 1.13458 1.20834 1.48062 0.86369 0.80860 0.81903 0.77820 1.19629 1.20813 1.20807 1.18333 1.01684 0.95361 0.91317 1.21239 0.94981 0.95915 0.96622 1.21070 1.01065 0.95337 0.98599 1.21017 0.97692 0.99474 0.91954 1.21452 1.02388 0.96343 1.00819 1.18971 0.94680 0.93510 0.85361 1.86676 1.71181 1.47209 1.17501 1.23444 0.77666 0.77487 0.89395 1.93095 1.36610 1.95636 1.92746 1.93092 1.85118 1.45345 1.94606 0.93625 0.89374 0.90096 0.86064 0.77695 0.95506 0.95494 0.92534 0.84497 0.85275 0.85428 0.84861 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 8.34 36.01 0.30 -1.23 16 2 C -0.01 -0.13 5.00 -102.25 -0.51 -0.64 16 3 C -0.19 -3.13 9.70 -37.52 -0.36 -3.49 16 4 C 0.53 10.88 7.67 -13.05 -0.10 10.78 16 5 O -0.55 -13.10 13.25 5.17 0.07 -13.03 16 6 N -0.71 -15.38 5.54 -62.94 -0.35 -15.72 16 7 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 8 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 9 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 12 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C -0.07 -0.84 5.21 -104.93 -0.55 -1.39 16 17 C -0.07 -0.74 9.79 -39.13 -0.38 -1.13 16 18 C -0.14 -1.28 10.02 -39.64 -0.40 -1.68 16 19 C -0.08 -0.75 10.03 -39.50 -0.40 -1.15 16 20 C -0.19 -2.02 8.25 -39.49 -0.33 -2.35 16 21 C 0.12 1.44 6.50 -38.64 -0.25 1.19 16 22 O -0.31 -3.58 9.89 -18.78 -0.19 -3.76 16 23 C 0.41 3.30 5.98 101.05 0.60 3.91 16 24 F -0.20 -1.84 15.59 2.25 0.04 -1.81 16 25 F -0.20 -1.79 15.58 2.25 0.04 -1.75 16 26 H 0.04 0.60 7.99 -51.93 -0.41 0.19 16 27 H 0.09 1.47 7.12 -51.93 -0.37 1.10 16 28 H 0.08 1.37 7.43 -51.92 -0.39 0.98 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.39 7.37 8.30 -40.82 -0.34 7.03 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 1.29 5.10 -52.49 -0.27 1.03 16 38 H 0.18 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -33.34 339.15 -6.66 -39.99 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.27 Total: 4.56 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.82 Total: -4.05 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.39 Total: -41.22 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.12 Total: -16.80 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.07 Total: -3.56 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.34 -6.66 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.227 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds