Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34998 * 120.00017 * 2 1 4 4 C 1.46232 * 120.00057 * 5.64866 * 3 2 1 5 5 O 1.21723 * 120.00467 * 5.60990 * 4 3 2 6 6 N 1.34781 * 120.00163 * 185.60911 * 4 3 2 7 7 C 1.46502 * 120.00301 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47152 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00051 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99791 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00285 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48512 * 109.46972 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47179 * 119.99677 * 12 10 8 15 15 H 1.48496 * 109.47146 * 239.99916 * 12 10 8 16 16 C 1.46943 * 119.99464 * 180.02562 * 2 1 3 17 17 C 1.39936 * 120.21073 * 254.99573 * 16 2 1 18 18 C 1.37748 * 119.88046 * 180.02562 * 17 16 2 19 19 C 1.38568 * 120.32056 * 359.97438 * 18 17 16 20 20 C 1.38123 * 120.43830 * 0.02842 * 19 18 17 21 21 C 1.38606 * 120.10633 * 359.97438 * 20 19 18 22 22 O 1.35692 * 120.15985 * 180.02562 * 21 20 19 23 23 C 1.42906 * 116.99900 * 359.95715 * 22 21 20 24 24 F 1.39894 * 109.46887 * 300.00143 * 23 22 21 25 25 F 1.39900 * 109.46775 * 59.99961 * 23 22 21 26 26 H 1.08997 * 109.47426 * 174.81585 * 1 2 3 27 27 H 1.08996 * 109.47647 * 294.82378 * 1 2 3 28 28 H 1.09008 * 109.46782 * 54.82509 * 1 2 3 29 29 H 1.08001 * 119.99650 * 185.63902 * 3 2 1 30 30 H 0.96999 * 119.99796 * 0.02562 * 6 4 3 31 31 H 1.09002 * 109.47050 * 300.00709 * 7 6 4 32 32 H 1.09001 * 109.46853 * 59.99955 * 7 6 4 33 33 H 0.96996 * 120.00066 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.05468 * 0.02562 * 17 16 2 35 35 H 1.07997 * 119.83880 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.78023 * 179.74333 * 19 18 17 37 37 H 1.07995 * 119.94841 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46822 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1691 0.0000 4 6 1.4562 2.4325 0.1246 5 8 0.2565 2.4275 0.3307 6 7 2.1155 3.6025 0.0114 7 6 1.3883 4.8682 0.1357 8 6 2.3486 6.0177 -0.0298 9 1 3.3960 5.8248 -0.2091 10 6 1.8903 7.3157 0.0489 11 7 0.6150 7.5506 0.2678 12 14 3.0808 8.7406 -0.1555 13 1 4.4488 8.2127 -0.3910 14 1 2.6649 9.5708 -1.3144 15 1 3.0751 9.5709 1.0756 16 6 2.2416 -1.2726 -0.0006 17 6 2.8647 -1.7265 1.1673 18 6 3.5520 -2.9202 1.1590 19 6 3.6292 -3.6749 -0.0006 20 6 3.0191 -3.2395 -1.1608 21 6 2.3229 -2.0410 -1.1726 22 8 1.7227 -1.6125 -2.3116 23 6 1.8490 -2.4468 -3.4650 24 9 3.2023 -2.5963 -3.7864 25 9 1.2922 -3.7017 -3.1958 26 1 -0.3634 -1.0234 -0.0929 27 1 -0.3634 0.4314 0.9326 28 1 -0.3633 0.5921 -0.8401 29 1 3.2581 1.1713 -0.0919 30 1 3.0714 3.6066 -0.1532 31 1 0.6200 4.9231 -0.6356 32 1 0.9207 4.9235 1.1188 33 1 0.2925 8.4638 0.3228 34 1 2.8069 -1.1418 2.0735 35 1 4.0324 -3.2700 2.0608 36 1 4.1739 -4.6075 0.0016 37 1 3.0846 -3.8338 -2.0601 38 1 1.3251 -1.9887 -4.3038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787630349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = -167.965296 kcal Electronic energy + Delta-G solvation = -24896.098672 eV Core-core repulsion = 20759.600336 eV Total energy + Delta-G solvation = -4136.498336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.34417 -48.33232 -41.24992 -40.47085 -38.50077 -36.47863 -35.60374 -34.34140 -31.52223 -31.03871 -29.90958 -28.19670 -27.09455 -25.25084 -24.18573 -23.34875 -21.94715 -20.61980 -19.83721 -18.97133 -18.91172 -18.55048 -17.64413 -17.15178 -17.08954 -16.64369 -16.20547 -15.94094 -15.78404 -15.62720 -15.29500 -14.99602 -14.82324 -14.67933 -14.47849 -14.24043 -14.03495 -13.98968 -13.73230 -13.51524 -13.42057 -12.95490 -12.82525 -12.74554 -12.67110 -12.43533 -12.21030 -12.05780 -11.45292 -10.81237 -10.61547 -10.34474 -9.94113 -9.68516 -9.39330 -8.29149 -6.45524 -0.00395 0.28736 0.40780 1.43121 1.44336 1.57933 1.58546 2.33363 2.36767 2.50851 2.57809 2.69912 3.05742 3.45607 3.54169 3.67293 3.82086 3.96029 3.98112 4.20223 4.27385 4.37773 4.47975 4.57188 4.77776 4.85991 4.99323 5.11359 5.12873 5.25272 5.28561 5.35096 5.42851 5.49020 5.55052 5.57942 5.74170 5.85694 6.02086 6.65491 6.94361 7.23530 7.50059 8.83341 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.002751 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.067284 B =10174.151071 C =10496.187179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.020 3.980 3 C -0.209 4.209 4 C 0.525 3.475 5 O -0.592 6.592 6 N -0.705 5.705 7 C 0.267 3.733 8 C -0.556 4.556 9 H 0.082 0.918 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.985 3.015 13 H -0.254 1.254 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.095 4.095 17 C -0.072 4.072 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.201 4.201 21 C 0.106 3.894 22 O -0.330 6.330 23 C 0.406 3.594 24 F -0.206 7.206 25 F -0.206 7.206 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.407 0.593 31 H -0.012 1.012 32 H -0.011 1.011 33 H 0.269 0.731 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.139 0.861 38 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.270 -26.211 -4.584 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 C -0.229 4.229 4 C 0.316 3.684 5 O -0.477 6.477 6 N -0.354 5.354 7 C 0.145 3.855 8 C -0.594 4.594 9 H 0.100 0.900 10 C -0.196 4.196 11 N -0.569 5.569 12 Si 0.808 3.192 13 H -0.178 1.178 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.096 4.096 17 C -0.090 4.090 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.219 4.219 21 C 0.063 3.937 22 O -0.247 6.247 23 C 0.317 3.683 24 F -0.188 7.188 25 F -0.187 7.187 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.242 0.758 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.229 -25.906 -4.462 27.263 hybrid contribution 0.464 0.855 -0.277 1.012 sum 7.694 -25.051 -4.739 26.631 Atomic orbital electron populations 1.20803 0.90695 1.01118 1.02837 1.20910 0.95765 0.91123 0.90382 1.22723 1.00871 0.90174 1.09171 1.18922 0.87062 0.85364 0.77055 1.90740 1.16568 1.88511 1.51852 1.46127 1.12585 1.05877 1.70806 1.18541 0.92146 0.80756 0.94089 1.21650 0.95553 0.91064 1.51142 0.89995 1.26066 0.97266 1.02319 0.93943 1.70139 1.15928 1.21812 1.49014 0.85105 0.78764 0.77533 0.77769 1.17751 1.20377 1.20345 1.18285 1.03672 0.94839 0.92823 1.21432 0.94653 0.96763 0.96141 1.21413 1.00088 0.94294 0.99758 1.21449 0.96447 1.00249 0.91191 1.21632 1.02541 0.95916 1.01841 1.19133 0.95142 0.94015 0.85422 1.86652 1.71358 1.48523 1.18203 1.24148 0.77602 0.77204 0.89306 1.93075 1.37432 1.95659 1.92653 1.93075 1.85135 1.45868 1.94666 0.91500 0.91030 0.92050 0.83327 0.75811 0.99379 0.99305 0.92226 0.83717 0.82237 0.82426 0.84325 0.75861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 8.34 71.24 0.59 -2.50 16 2 C 0.02 0.60 5.00 -18.33 -0.09 0.51 16 3 C -0.21 -6.69 9.70 23.60 0.23 -6.46 16 4 C 0.53 22.44 7.67 86.32 0.66 23.10 16 5 O -0.59 -29.63 13.25 -4.42 -0.06 -29.69 16 6 N -0.71 -31.55 5.54 -471.25 -2.61 -34.16 16 7 C 0.27 15.09 5.43 85.63 0.46 15.55 16 8 C -0.56 -30.93 9.28 25.60 0.24 -30.69 16 9 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 10 C 0.00 0.20 5.46 84.66 0.46 0.66 16 11 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 12 Si 0.99 42.84 29.54 68.60 2.03 44.86 16 13 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 C -0.10 -2.31 5.21 -20.06 -0.10 -2.41 16 17 C -0.07 -1.38 9.79 22.57 0.22 -1.16 16 18 C -0.14 -1.98 10.02 22.23 0.22 -1.76 16 19 C -0.08 -1.10 10.03 22.32 0.22 -0.88 16 20 C -0.20 -3.78 8.25 22.33 0.18 -3.60 16 21 C 0.11 2.44 6.50 22.88 0.15 2.59 16 22 O -0.33 -7.31 9.89 -90.11 -0.89 -8.21 16 23 C 0.41 5.90 5.98 113.37 0.68 6.58 16 24 F -0.21 -3.50 15.59 44.97 0.70 -2.80 16 25 F -0.21 -3.38 15.58 44.97 0.70 -2.68 16 26 H 0.07 1.77 7.99 -2.39 -0.02 1.76 16 27 H 0.07 2.51 7.12 -2.39 -0.02 2.49 16 28 H 0.06 2.18 7.43 -2.38 -0.02 2.16 16 29 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.41 15.33 8.30 -92.71 -0.77 14.56 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.14 2.41 5.10 -2.91 -0.01 2.39 16 38 H 0.23 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -75.45 339.15 4.62 -70.83 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.34 Total: 18.69 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.13 Total: -0.46 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -2.33 Total: -90.55 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.95 Total: -37.90 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 1.40 Total: -5.47 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.45 4.62 -70.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.138 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds